Wall clock time and date at job start Tue Mar 31 2020 03:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47140 * 2 1 4 4 C 1.38045 * 126.29595 * 269.99940 * 3 2 1 5 5 C 1.47430 * 126.40982 * 0.02562 * 4 3 2 6 6 O 1.21607 * 120.00394 * 349.32257 * 5 4 3 7 7 N 1.34783 * 119.99744 * 169.31976 * 5 4 3 8 8 C 1.46492 * 119.99897 * 0.44984 * 7 5 4 9 9 C 1.46507 * 119.99777 * 180.44305 * 7 5 4 10 10 C 1.52994 * 109.46530 * 95.94088 * 9 7 5 11 11 H 1.08997 * 112.96930 * 55.70631 * 10 9 7 12 12 C 1.53954 * 113.76750 * 187.38301 * 10 9 7 13 13 C 1.53942 * 86.28956 * 137.90802 * 12 10 9 14 14 N 1.47579 * 86.12017 * 336.39020 * 13 12 10 15 15 C 1.36933 * 134.49455 * 204.64111 * 14 13 12 16 16 H 1.07998 * 119.99884 * 224.14809 * 15 14 13 17 17 C 1.38810 * 120.00057 * 44.13874 * 15 14 13 18 18 N 1.31622 * 120.00150 * 204.94603 * 17 15 14 19 19 Si 1.86803 * 119.99844 * 24.95763 * 17 15 14 20 20 H 1.48493 * 109.47586 * 94.68125 * 19 17 15 21 21 H 1.48504 * 109.46935 * 214.68445 * 19 17 15 22 22 H 1.48505 * 109.46821 * 334.68224 * 19 17 15 23 23 C 1.41283 * 107.17469 * 179.97438 * 4 3 2 24 24 N 1.30449 * 108.02517 * 359.97438 * 23 4 3 25 25 N 1.34265 * 126.29300 * 89.68657 * 3 2 1 26 26 C 1.46505 * 125.74865 * 359.97438 * 25 3 2 27 27 H 1.08999 * 109.47182 * 299.99984 * 1 2 3 28 28 H 1.09002 * 109.46734 * 60.00294 * 1 2 3 29 29 H 1.09008 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47182 * 240.00016 * 2 1 3 31 31 H 1.08999 * 109.47123 * 120.00037 * 2 1 3 32 32 H 1.09008 * 109.47303 * 84.01669 * 8 7 5 33 33 H 1.09008 * 109.47142 * 204.01099 * 8 7 5 34 34 H 1.08999 * 109.47444 * 324.00859 * 8 7 5 35 35 H 1.08998 * 109.47037 * 215.94174 * 9 7 5 36 36 H 1.08992 * 109.47037 * 335.94235 * 9 7 5 37 37 H 1.09002 * 113.73728 * 252.25620 * 12 10 9 38 38 H 1.08998 * 113.74099 * 23.45296 * 12 10 9 39 39 H 1.09005 * 113.76867 * 90.69741 * 13 12 10 40 40 H 1.09006 * 113.76696 * 221.97667 * 13 12 10 41 41 H 0.96993 * 119.99752 * 180.02562 * 18 17 15 42 42 H 1.08008 * 125.99058 * 180.02562 * 23 4 3 43 43 H 1.09001 * 109.47321 * 89.99918 * 26 25 3 44 44 H 1.09000 * 109.46691 * 209.99866 * 26 25 3 45 45 H 1.09000 * 109.47090 * 329.99169 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1912 -1.1126 5 6 2.1581 1.7781 -2.5202 6 8 1.9520 0.6112 -2.7933 7 7 2.2526 2.6940 -3.5046 8 6 2.5107 4.0981 -3.1763 9 6 2.0972 2.2852 -4.9029 10 6 0.6524 2.5231 -5.3461 11 1 0.3272 3.5533 -5.2011 12 6 0.3317 1.9621 -6.7435 13 6 -0.9970 1.4786 -6.1346 14 7 -0.3000 1.5185 -4.8344 15 6 -0.4690 0.8800 -3.6349 16 1 -0.4067 1.4382 -2.7125 17 6 -0.7205 -0.4848 -3.6045 18 7 -1.3513 -1.0151 -2.5783 19 14 -0.1633 -1.5689 -5.0201 20 1 1.1616 -2.1584 -4.7005 21 1 -1.1519 -2.6572 -5.2289 22 1 -0.0568 -0.7529 -6.2563 23 6 2.7491 3.4499 -0.6498 24 7 2.7399 3.4267 0.6544 25 7 2.2916 2.1720 1.0822 26 6 2.1334 1.7489 2.4758 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5828 4.2513 -3.0527 33 1 2.1436 4.7332 -3.9826 34 1 1.9977 4.3548 -2.2495 35 1 2.7706 2.8701 -5.5294 36 1 2.3377 1.2266 -5.0007 37 1 0.2106 2.7301 -7.5075 38 1 0.9937 1.1540 -7.0544 39 1 -1.8084 2.2013 -6.2206 40 1 -1.2855 0.4757 -6.4498 41 1 -1.5267 -1.9688 -2.5569 42 1 3.0439 4.2854 -1.2676 43 1 3.0629 1.3010 2.8274 44 1 1.8908 2.6140 3.0928 45 1 1.3287 1.0168 2.5441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085694321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:45 Heat of formation + Delta-G solvation = 132.382251 kcal Electronic energy + Delta-G solvation = -27540.161557 eV Core-core repulsion = 23984.075342 eV Total energy + Delta-G solvation = -3556.086214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14016 -38.87913 -37.43623 -34.92373 -33.56725 -32.59141 -31.97670 -29.32463 -28.43468 -28.04757 -26.47524 -26.09159 -23.36678 -22.96272 -22.42827 -21.24265 -20.04371 -18.78611 -18.21945 -16.98518 -16.54672 -15.71125 -15.49814 -15.16709 -15.00737 -14.56768 -14.11765 -13.75089 -13.54074 -13.40714 -13.05558 -12.74723 -12.72817 -12.59360 -12.42914 -12.24478 -12.11186 -11.51676 -11.41477 -11.24862 -10.96980 -10.93203 -10.83856 -10.59568 -10.41547 -10.12698 -10.06636 -10.03655 -9.69416 -9.28039 -9.05091 -8.70136 -8.19425 -8.04006 -7.73541 -6.38714 -5.76622 -3.13930 2.03701 2.65523 2.66315 3.59405 3.68664 3.72990 3.75754 4.36866 4.69841 4.81697 4.97730 4.99313 5.17098 5.20812 5.40175 5.41072 5.45796 5.51586 5.57927 5.62594 5.67367 5.81567 5.91914 5.93933 5.99981 6.07893 6.10791 6.24242 6.28776 6.33183 6.37788 6.57990 6.69694 6.78505 6.81389 6.84855 6.89645 7.21741 7.26448 7.38089 7.60492 7.90858 7.91559 8.28605 8.57452 9.02253 9.32806 9.94943 10.72019 11.38923 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006914 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.022546 B = 4048.647648 C = 5349.977365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C 0.166 3.834 4 C -0.281 4.281 5 C 0.582 3.418 6 O -0.480 6.480 7 N -0.613 5.613 8 C 0.070 3.930 9 C 0.126 3.874 10 C 0.115 3.885 11 H 0.047 0.953 12 C -0.150 4.150 13 C 0.103 3.897 14 N -0.603 5.603 15 C -0.204 4.204 16 H 0.067 0.933 17 C 0.065 3.935 18 N -0.893 5.893 19 Si 0.864 3.136 20 H -0.291 1.291 21 H -0.309 1.309 22 H -0.259 1.259 23 C 0.053 3.947 24 N -0.316 5.316 25 N -0.371 5.371 26 C 0.100 3.900 27 H 0.022 0.978 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.049 0.951 41 H 0.257 0.743 42 H 0.202 0.798 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 8.006 3.378 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C 0.035 3.965 4 C -0.295 4.295 5 C 0.370 3.630 6 O -0.352 6.352 7 N -0.348 5.348 8 C -0.074 4.074 9 C 0.002 3.998 10 C 0.008 3.992 11 H 0.064 0.936 12 C -0.189 4.189 13 C -0.021 4.021 14 N -0.331 5.331 15 C -0.331 4.331 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.534 5.534 19 Si 0.694 3.306 20 H -0.219 1.219 21 H -0.238 1.238 22 H -0.184 1.184 23 C -0.133 4.133 24 N -0.135 5.135 25 N -0.151 5.151 26 C -0.042 4.042 27 H 0.041 0.959 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.218 0.782 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.054 7.719 4.773 12.134 hybrid contribution 0.113 -0.887 -1.296 1.574 sum 8.167 6.832 3.478 11.201 Atomic orbital electron populations 1.21677 0.91227 1.03383 1.02442 1.20508 0.98714 0.87557 1.03680 1.21697 0.93802 0.95149 0.85889 1.20125 1.19445 0.95589 0.94389 1.16955 0.77552 0.85543 0.82973 1.90862 1.44556 1.17095 1.82691 1.47255 1.73987 1.07142 1.06399 1.22203 0.99543 0.83514 1.02093 1.21621 0.96288 1.01473 0.80375 1.22912 0.90785 0.94503 0.90965 0.93571 1.23600 0.99458 0.99857 0.95973 1.22889 0.93341 0.98392 0.87475 1.45932 1.29212 1.47183 1.10755 1.18026 1.44017 0.88931 0.82128 0.91568 1.25337 0.96582 0.96277 0.95399 1.69870 1.39840 1.11800 1.31893 0.87090 0.78408 0.80181 0.84949 1.21850 1.23751 1.18359 1.24938 0.98442 0.97997 0.91924 1.77052 1.22970 0.99920 1.13604 1.48239 1.50820 1.09915 1.06105 1.21854 1.02853 1.01558 0.77930 0.95892 0.88103 0.91540 0.86920 0.92534 0.93426 0.91680 0.90425 0.92312 0.89601 0.93010 0.90711 0.94918 0.93290 0.93370 0.78163 0.90921 0.89364 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.35 37.16 0.35 -2.30 16 2 C -0.07 -1.21 5.50 -27.89 -0.15 -1.36 16 3 C 0.17 3.04 6.26 -81.60 -0.51 2.53 16 4 C -0.28 -5.34 5.95 -105.07 -0.62 -5.97 16 5 C 0.58 12.22 6.12 -12.51 -0.08 12.14 16 6 O -0.48 -11.88 11.32 5.27 0.06 -11.82 16 7 N -0.61 -11.01 2.87 -182.85 -0.53 -11.54 16 8 C 0.07 0.92 8.75 59.84 0.52 1.44 16 9 C 0.13 2.28 5.33 -4.04 -0.02 2.26 16 10 C 0.12 2.23 4.54 -66.86 -0.30 1.93 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.15 -2.69 7.71 -25.80 -0.20 -2.89 16 13 C 0.10 2.21 7.74 -2.98 -0.02 2.19 16 14 N -0.60 -14.46 2.77 -170.73 -0.47 -14.93 16 15 C -0.20 -5.59 7.22 -15.06 -0.11 -5.70 16 16 H 0.07 2.02 5.97 -52.49 -0.31 1.71 16 17 C 0.07 1.85 5.15 -17.43 -0.09 1.76 16 18 N -0.89 -25.78 12.43 55.49 0.69 -25.09 16 19 Si 0.86 22.82 27.35 -169.99 -4.65 18.17 16 20 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 21 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 22 H -0.26 -6.43 4.70 56.52 0.27 -6.17 16 23 C 0.05 0.85 9.86 -16.98 -0.17 0.68 16 24 N -0.32 -5.24 12.50 30.86 0.39 -4.85 16 25 N -0.37 -5.93 3.98 -63.34 -0.25 -6.18 16 26 C 0.10 1.10 11.06 59.85 0.66 1.77 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 2.55 5.71 -51.93 -0.30 2.25 16 29 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 30 H 0.11 2.43 6.35 -51.93 -0.33 2.10 16 31 H 0.06 0.85 7.71 -51.93 -0.40 0.45 16 32 H 0.05 0.51 7.63 -51.92 -0.40 0.11 16 33 H 0.06 0.74 8.03 -51.92 -0.42 0.32 16 34 H 0.08 1.03 4.82 -51.93 -0.25 0.78 16 35 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 36 H 0.09 1.83 7.24 -51.93 -0.38 1.45 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.37 7.85 -51.93 -0.41 0.97 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.11 5.47 -51.93 -0.28 0.83 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.20 2.51 4.54 -52.48 -0.24 2.27 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.90 7.63 -51.93 -0.40 0.51 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -33.53 345.06 -7.07 -40.60 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.76 Total: 1.96 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -0.75 Total: 8.49 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.17 Total: -62.60 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.06 Total: -11.82 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.65 Total: 18.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.53 -7.07 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085694321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.980 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds