Wall clock time and date at job start Tue Mar 31 2020 03:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47140 * 2 1 4 4 C 1.38045 * 126.29595 * 269.99940 * 3 2 1 5 5 C 1.47430 * 126.40982 * 0.02562 * 4 3 2 6 6 O 1.21607 * 120.00394 * 349.32257 * 5 4 3 7 7 N 1.34783 * 119.99744 * 169.31976 * 5 4 3 8 8 C 1.46492 * 119.99897 * 0.44984 * 7 5 4 9 9 C 1.46507 * 119.99777 * 180.44305 * 7 5 4 10 10 C 1.52994 * 109.46530 * 95.94088 * 9 7 5 11 11 H 1.08997 * 112.96930 * 55.70631 * 10 9 7 12 12 C 1.53954 * 113.76750 * 187.38301 * 10 9 7 13 13 C 1.53942 * 86.28956 * 137.90802 * 12 10 9 14 14 N 1.47579 * 86.12017 * 336.39020 * 13 12 10 15 15 C 1.36933 * 134.49455 * 204.64111 * 14 13 12 16 16 H 1.07998 * 119.99884 * 224.14809 * 15 14 13 17 17 C 1.38810 * 120.00057 * 44.13874 * 15 14 13 18 18 N 1.31622 * 120.00150 * 204.94603 * 17 15 14 19 19 Si 1.86803 * 119.99844 * 24.95763 * 17 15 14 20 20 H 1.48493 * 109.47586 * 94.68125 * 19 17 15 21 21 H 1.48504 * 109.46935 * 214.68445 * 19 17 15 22 22 H 1.48505 * 109.46821 * 334.68224 * 19 17 15 23 23 C 1.41283 * 107.17469 * 179.97438 * 4 3 2 24 24 N 1.30449 * 108.02517 * 359.97438 * 23 4 3 25 25 N 1.34265 * 126.29300 * 89.68657 * 3 2 1 26 26 C 1.46505 * 125.74865 * 359.97438 * 25 3 2 27 27 H 1.08999 * 109.47182 * 299.99984 * 1 2 3 28 28 H 1.09002 * 109.46734 * 60.00294 * 1 2 3 29 29 H 1.09008 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47182 * 240.00016 * 2 1 3 31 31 H 1.08999 * 109.47123 * 120.00037 * 2 1 3 32 32 H 1.09008 * 109.47303 * 84.01669 * 8 7 5 33 33 H 1.09008 * 109.47142 * 204.01099 * 8 7 5 34 34 H 1.08999 * 109.47444 * 324.00859 * 8 7 5 35 35 H 1.08998 * 109.47037 * 215.94174 * 9 7 5 36 36 H 1.08992 * 109.47037 * 335.94235 * 9 7 5 37 37 H 1.09002 * 113.73728 * 252.25620 * 12 10 9 38 38 H 1.08998 * 113.74099 * 23.45296 * 12 10 9 39 39 H 1.09005 * 113.76867 * 90.69741 * 13 12 10 40 40 H 1.09006 * 113.76696 * 221.97667 * 13 12 10 41 41 H 0.96993 * 119.99752 * 180.02562 * 18 17 15 42 42 H 1.08008 * 125.99058 * 180.02562 * 23 4 3 43 43 H 1.09001 * 109.47321 * 89.99918 * 26 25 3 44 44 H 1.09000 * 109.46691 * 209.99866 * 26 25 3 45 45 H 1.09000 * 109.47090 * 329.99169 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1912 -1.1126 5 6 2.1581 1.7781 -2.5202 6 8 1.9520 0.6112 -2.7933 7 7 2.2526 2.6940 -3.5046 8 6 2.5107 4.0981 -3.1763 9 6 2.0972 2.2852 -4.9029 10 6 0.6524 2.5231 -5.3461 11 1 0.3272 3.5533 -5.2011 12 6 0.3317 1.9621 -6.7435 13 6 -0.9970 1.4786 -6.1346 14 7 -0.3000 1.5185 -4.8344 15 6 -0.4690 0.8800 -3.6349 16 1 -0.4067 1.4382 -2.7125 17 6 -0.7205 -0.4848 -3.6045 18 7 -1.3513 -1.0151 -2.5783 19 14 -0.1633 -1.5689 -5.0201 20 1 1.1616 -2.1584 -4.7005 21 1 -1.1519 -2.6572 -5.2289 22 1 -0.0568 -0.7529 -6.2563 23 6 2.7491 3.4499 -0.6498 24 7 2.7399 3.4267 0.6544 25 7 2.2916 2.1720 1.0822 26 6 2.1334 1.7489 2.4758 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5828 4.2513 -3.0527 33 1 2.1436 4.7332 -3.9826 34 1 1.9977 4.3548 -2.2495 35 1 2.7706 2.8701 -5.5294 36 1 2.3377 1.2266 -5.0007 37 1 0.2106 2.7301 -7.5075 38 1 0.9937 1.1540 -7.0544 39 1 -1.8084 2.2013 -6.2206 40 1 -1.2855 0.4757 -6.4498 41 1 -1.5267 -1.9688 -2.5569 42 1 3.0439 4.2854 -1.2676 43 1 3.0629 1.3010 2.8274 44 1 1.8908 2.6140 3.0928 45 1 1.3287 1.0168 2.5441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085694321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:44 Heat of formation + Delta-G solvation = 109.332985 kcal Electronic energy + Delta-G solvation = -27541.161048 eV Core-core repulsion = 23984.075342 eV Total energy + Delta-G solvation = -3557.085705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.44636 -40.40676 -39.04614 -36.38174 -34.95173 -34.20040 -33.74361 -30.78167 -30.04521 -29.63800 -27.63490 -27.40137 -24.93824 -24.78819 -23.97698 -22.54992 -21.37640 -20.48715 -19.62795 -18.87254 -17.92445 -17.10734 -17.00935 -16.64220 -16.43913 -16.17101 -15.37936 -15.24004 -15.19440 -15.05809 -14.68871 -14.46811 -14.13076 -14.07134 -13.72068 -13.46582 -13.42762 -13.04740 -12.97295 -12.80865 -12.64632 -12.51111 -12.44204 -12.23159 -11.98350 -11.91852 -11.69229 -11.58285 -11.44092 -11.26329 -10.35220 -10.28473 -10.19640 -9.48868 -9.16191 -8.29548 -7.92375 -5.24127 0.65974 1.33882 1.41217 1.50698 1.52855 1.56474 2.38978 2.66760 2.90049 3.22750 3.50627 3.62056 3.63285 3.98551 4.01457 4.17127 4.27455 4.37152 4.37809 4.44451 4.51666 4.53042 4.54803 4.61450 4.64476 4.70150 4.72619 4.82303 4.87660 4.94245 5.00515 5.05052 5.10957 5.18738 5.22541 5.32906 5.53771 5.66982 5.83531 5.97931 6.00690 6.04557 6.48752 6.61748 6.86988 6.91757 7.81415 7.82894 8.70270 9.27184 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006914 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.022546 B = 4048.647648 C = 5349.977365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C 0.151 3.849 4 C -0.309 4.309 5 C 0.573 3.427 6 O -0.534 6.534 7 N -0.615 5.615 8 C 0.063 3.937 9 C 0.127 3.873 10 C 0.117 3.883 11 H 0.065 0.935 12 C -0.126 4.126 13 C 0.093 3.907 14 N -0.635 5.635 15 C -0.170 4.170 16 H 0.029 0.971 17 C 0.021 3.979 18 N -0.923 5.923 19 Si 0.902 3.098 20 H -0.317 1.317 21 H -0.320 1.320 22 H -0.233 1.233 23 C 0.063 3.937 24 N -0.321 5.321 25 N -0.365 5.365 26 C 0.086 3.914 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.031 0.969 41 H 0.249 0.751 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 11.144 2.778 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C 0.018 3.982 4 C -0.324 4.324 5 C 0.362 3.638 6 O -0.410 6.410 7 N -0.349 5.349 8 C -0.079 4.079 9 C 0.003 3.997 10 C 0.011 3.989 11 H 0.083 0.917 12 C -0.165 4.165 13 C -0.031 4.031 14 N -0.363 5.363 15 C -0.299 4.299 16 H 0.047 0.953 17 C -0.176 4.176 18 N -0.567 5.567 19 Si 0.734 3.266 20 H -0.247 1.247 21 H -0.249 1.249 22 H -0.156 1.156 23 C -0.122 4.122 24 N -0.141 5.141 25 N -0.144 5.144 26 C -0.053 4.053 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.251 0.749 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.541 10.938 4.149 15.096 hybrid contribution -0.328 -1.699 -1.055 2.027 sum 9.213 9.238 3.093 13.409 Atomic orbital electron populations 1.21389 0.92804 1.01848 1.00965 1.20249 0.97068 0.88391 1.03579 1.21616 0.94515 0.95071 0.86994 1.20254 1.21022 0.97307 0.93779 1.17410 0.76699 0.85395 0.84305 1.90839 1.47245 1.19310 1.83584 1.47401 1.72866 1.08797 1.05824 1.22480 1.01698 0.80767 1.02923 1.21596 0.96489 1.00236 0.81330 1.23071 0.90568 0.93883 0.91344 0.91734 1.23408 0.96421 1.00509 0.96114 1.23060 0.95617 0.98092 0.86353 1.46272 1.31761 1.47905 1.10370 1.17633 1.41344 0.88424 0.82480 0.95335 1.25666 0.98021 0.97247 0.96696 1.69976 1.42204 1.11188 1.33322 0.86453 0.76290 0.79171 0.84721 1.24710 1.24855 1.15635 1.25385 0.97338 0.97655 0.91867 1.77023 1.23068 1.00183 1.13839 1.48580 1.49494 1.09255 1.07119 1.22288 1.04574 1.02816 0.75657 0.93559 0.93063 0.93086 0.90664 0.88879 0.90280 0.89158 0.90754 0.87466 0.93429 0.88363 0.91178 0.93349 0.95116 0.94232 0.74906 0.88600 0.87589 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 9.35 71.98 0.67 -4.14 16 2 C -0.05 -2.06 5.50 29.85 0.16 -1.90 16 3 C 0.15 5.55 6.26 42.14 0.26 5.81 16 4 C -0.31 -11.74 5.95 -20.15 -0.12 -11.86 16 5 C 0.57 24.48 6.12 86.66 0.53 25.01 16 6 O -0.53 -27.85 11.32 -4.05 -0.05 -27.90 16 7 N -0.62 -21.16 2.87 -850.66 -2.45 -23.60 16 8 C 0.06 1.42 8.75 127.77 1.12 2.53 16 9 C 0.13 4.32 5.33 86.38 0.46 4.79 16 10 C 0.12 4.22 4.54 45.09 0.20 4.43 16 11 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 12 C -0.13 -4.04 7.71 31.26 0.24 -3.80 16 13 C 0.09 3.80 7.74 86.48 0.67 4.47 16 14 N -0.63 -30.20 2.77 -694.08 -1.92 -32.12 16 15 C -0.17 -9.66 7.22 84.03 0.61 -9.06 16 16 H 0.03 1.86 5.97 -2.91 -0.02 1.84 16 17 C 0.02 1.24 5.15 84.86 0.44 1.68 16 18 N -0.92 -56.63 12.43 21.65 0.27 -56.36 16 19 Si 0.90 49.05 27.35 68.60 1.88 50.93 16 20 H -0.32 -18.46 7.11 99.48 0.71 -17.76 16 21 H -0.32 -17.68 7.11 99.48 0.71 -16.98 16 22 H -0.23 -11.47 4.70 99.48 0.47 -11.00 16 23 C 0.06 1.90 9.86 85.65 0.84 2.75 16 24 N -0.32 -9.97 12.50 -56.27 -0.70 -10.67 16 25 N -0.36 -11.10 3.98 -354.30 -1.41 -12.51 16 26 C 0.09 1.70 11.06 127.77 1.41 3.11 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.75 5.71 -2.39 -0.01 2.74 16 29 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.07 3.50 6.35 -2.39 -0.02 3.48 16 31 H 0.09 2.78 7.71 -2.39 -0.02 2.76 16 32 H 0.08 1.32 7.63 -2.38 -0.02 1.31 16 33 H 0.09 1.60 8.03 -2.38 -0.02 1.58 16 34 H 0.07 1.74 4.82 -2.39 -0.01 1.73 16 35 H 0.11 2.60 8.12 -2.39 -0.02 2.58 16 36 H 0.05 2.01 7.24 -2.39 -0.02 1.99 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.35 7.85 -2.39 -0.02 2.33 16 39 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.03 1.36 5.47 -2.38 -0.01 1.35 16 41 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.24 5.05 4.54 -2.91 -0.01 5.04 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.10 1.77 7.63 -2.39 -0.02 1.75 16 Total: -1.00 -79.95 345.06 3.89 -76.06 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.76 Total: 12.35 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 7.51 Total: 23.83 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -6.21 Total: -135.27 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.88 Total: 50.93 kcal Total: -79.95 3.89 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085694321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.394 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds