Wall clock time and date at job start Tue Mar 31 2020 04:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.09003 * 109.86862 * 55.80225 * 3 2 1 5 5 C 1.54323 * 109.88132 * 294.79225 * 3 2 1 6 6 H 1.09001 * 110.72020 * 336.92682 * 5 3 2 7 7 N 1.46503 * 110.72404 * 100.02099 * 5 3 2 8 8 C 1.34772 * 120.00468 * 204.99674 * 7 5 3 9 9 O 1.21286 * 119.99613 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00164 * 180.02562 * 8 7 5 11 11 H 1.08995 * 109.47178 * 59.99694 * 10 8 7 12 12 C 1.53001 * 109.47052 * 300.00084 * 10 8 7 13 13 N 1.46502 * 109.47197 * 180.02562 * 10 8 7 14 14 C 1.34943 * 126.03703 * 84.99819 * 13 10 8 15 15 C 1.35323 * 107.74352 * 179.97438 * 14 13 10 16 16 C 1.39863 * 107.91870 * 0.02562 * 15 14 13 17 17 N 1.30839 * 108.20762 * 359.74026 * 16 15 14 18 18 C 1.55154 * 102.94267 * 218.38700 * 5 3 2 19 19 C 1.54917 * 101.58241 * 35.49920 * 18 5 3 20 20 N 1.47016 * 109.88290 * 176.98115 * 3 2 1 21 21 C 1.36937 * 125.65231 * 298.39300 * 20 3 2 22 22 H 1.08003 * 119.99294 * 345.37875 * 21 20 3 23 23 C 1.38808 * 120.00278 * 165.37883 * 21 20 3 24 24 N 1.31614 * 120.00006 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99904 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46997 * 120.00321 * 25 23 21 28 28 H 1.48502 * 109.46988 * 240.00119 * 25 23 21 29 29 H 1.09003 * 109.47115 * 305.57758 * 1 2 3 30 30 H 1.09003 * 109.47416 * 65.58090 * 1 2 3 31 31 H 1.09005 * 109.46992 * 185.57674 * 1 2 3 32 32 H 1.09005 * 109.47149 * 240.00505 * 2 1 3 33 33 H 1.09001 * 109.47574 * 120.00272 * 2 1 3 34 34 H 0.97004 * 119.99091 * 25.00076 * 7 5 3 35 35 H 1.09002 * 109.47429 * 300.00043 * 12 10 8 36 36 H 1.09002 * 109.47479 * 60.00221 * 12 10 8 37 37 H 1.08999 * 109.47589 * 180.02562 * 12 10 8 38 38 H 1.08001 * 126.12949 * 359.95644 * 14 13 10 39 39 H 1.08005 * 126.03620 * 179.97438 * 15 14 13 40 40 H 1.08004 * 125.89523 * 179.97438 * 16 15 14 41 41 H 1.09002 * 111.00841 * 153.57377 * 18 5 3 42 42 H 1.08999 * 111.00566 * 277.42572 * 18 5 3 43 43 H 1.08993 * 110.36823 * 204.14896 * 19 18 5 44 44 H 1.09000 * 110.36447 * 81.82935 * 19 18 5 45 45 H 0.96998 * 120.00310 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9839 0.8479 5 6 1.6412 2.1402 -1.3175 6 1 1.4634 1.4066 -2.1039 7 7 0.4591 2.9830 -1.1207 8 6 -0.3450 3.2702 -2.1634 9 8 -0.0903 2.8305 -3.2647 10 6 -1.5605 4.1375 -1.9609 11 1 -1.2519 5.1147 -1.5895 12 6 -2.4946 3.4774 -0.9447 13 7 -2.2631 4.2990 -3.2363 14 6 -3.1734 3.4482 -3.7545 15 6 -3.5839 3.9553 -4.9401 16 6 -2.9006 5.1569 -5.1538 17 7 -2.1125 5.3666 -4.1308 18 6 2.8860 3.0076 -1.6420 19 6 4.0371 2.0990 -1.1427 20 7 3.5083 1.4537 0.0728 21 6 4.2604 0.9480 1.0993 22 1 3.7941 0.7099 2.0440 23 6 5.6220 0.7412 0.9258 24 7 6.1903 1.0318 -0.2253 25 14 6.6478 0.0506 2.3259 26 1 5.7778 -0.1899 3.5051 27 1 7.2696 -1.2288 1.8996 28 1 7.7115 1.0222 2.6861 29 1 -0.3633 0.5979 0.8359 30 1 -0.3634 0.4248 -0.9357 31 1 -0.3633 -1.0229 0.0999 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.2553 3.3343 -0.2397 35 1 -2.8033 2.5002 -1.3161 36 1 -1.9721 3.3569 0.0043 37 1 -3.3741 4.1045 -0.7986 38 1 -3.5132 2.5274 -3.3039 39 1 -4.3101 3.5104 -5.6042 40 1 -3.0081 5.8022 -6.0132 41 1 2.9677 3.1883 -2.7138 42 1 2.8623 3.9471 -1.0897 43 1 4.9160 2.6973 -0.9030 44 1 4.2815 1.3487 -1.8947 45 1 7.1418 0.8877 -0.3465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087508399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:07 Heat of formation + Delta-G solvation = 68.456744 kcal Electronic energy + Delta-G solvation = -25957.519202 eV Core-core repulsion = 22398.660970 eV Total energy + Delta-G solvation = -3558.858232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.37685 -39.78313 -37.81998 -34.75214 -34.09056 -32.81834 -31.75331 -30.17838 -29.70461 -28.90893 -26.69678 -25.20507 -24.25843 -22.44999 -21.39303 -21.11595 -20.31871 -20.19160 -19.45003 -17.57930 -17.22326 -16.82988 -15.93178 -15.30328 -14.85328 -14.64473 -14.34833 -14.14737 -13.94050 -13.74346 -13.68756 -13.28135 -12.98756 -12.82122 -12.71486 -12.61930 -12.09965 -12.00459 -11.89612 -11.70757 -11.21514 -10.94897 -10.88476 -10.75182 -10.68834 -10.52363 -10.36159 -10.09240 -9.98052 -9.79976 -9.70915 -9.38979 -8.75409 -8.63733 -8.61942 -6.85863 -5.79709 -3.16627 1.78017 2.25312 2.55056 2.82882 3.23526 3.35566 3.41419 3.43681 4.21424 4.41888 4.47114 4.59727 4.71511 4.86679 5.08080 5.19766 5.24631 5.30016 5.44122 5.45182 5.49542 5.55466 5.67170 5.72328 5.73652 5.78258 5.94526 5.97988 6.16387 6.20015 6.33761 6.39182 6.48975 6.57067 6.62265 6.65532 6.86383 6.88348 7.07525 7.46223 7.52827 7.59048 7.64758 7.74660 8.19140 8.23629 9.13258 9.74371 10.41812 11.32195 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.003214 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.114889 B = 8711.053373 C = 9177.324961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.708 5.708 8 C 0.500 3.500 9 O -0.523 6.523 10 C 0.141 3.859 11 H 0.127 0.873 12 C -0.160 4.160 13 N -0.352 5.352 14 C 0.069 3.931 15 C -0.277 4.277 16 C 0.045 3.955 17 N -0.291 5.291 18 C -0.157 4.157 19 C 0.174 3.826 20 N -0.594 5.594 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.003 4.003 24 N -0.915 5.915 25 Si 0.910 3.090 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.169 0.831 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.028 0.972 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 5.358 -2.390 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.112 0.888 7 N -0.359 5.359 8 C 0.283 3.717 9 O -0.398 6.398 10 C 0.035 3.965 11 H 0.144 0.856 12 C -0.219 4.219 13 N -0.134 5.134 14 C -0.077 4.077 15 C -0.306 4.306 16 C -0.142 4.142 17 N -0.112 5.112 18 C -0.197 4.197 19 C 0.049 3.951 20 N -0.318 5.318 21 C -0.358 4.358 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.561 5.561 25 Si 0.740 3.260 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.186 0.814 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.427 5.746 -2.498 19.463 hybrid contribution 0.000 -0.894 0.656 1.109 sum -18.427 4.851 -1.842 19.144 Atomic orbital electron populations 1.21768 0.97346 1.00532 1.00726 1.22024 0.93525 0.99199 1.02475 1.21067 0.87173 0.93326 0.93055 0.94745 1.22157 0.83167 0.92354 0.98911 0.88757 1.46020 1.26817 1.52068 1.10987 1.20577 0.84216 0.81646 0.85304 1.90769 1.72880 1.51981 1.24127 1.21127 0.91842 1.01901 0.81655 0.85556 1.22164 0.99815 1.01850 0.98050 1.48178 1.31647 1.17081 1.16514 1.22401 0.93006 0.96515 0.95791 1.21442 1.09761 0.99806 0.99639 1.23849 0.95153 0.97570 0.97596 1.77363 1.23048 1.08866 1.01901 1.23430 0.96737 0.99088 1.00402 1.21433 0.93107 0.92887 0.87659 1.44450 0.98313 1.68366 1.20703 1.18973 0.89922 1.36021 0.90840 0.90637 1.24918 0.97261 1.00840 0.96977 1.69934 1.10629 1.52715 1.22854 0.86083 0.80254 0.78516 0.81113 1.20433 1.21668 1.21729 0.93438 0.93470 0.93657 0.92378 0.91640 0.76742 0.90810 0.89098 0.90244 0.81391 0.83637 0.80135 0.91961 0.91967 0.90738 0.95397 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.58 37.16 0.36 -1.63 16 2 C -0.13 -2.35 5.41 -26.73 -0.14 -2.50 16 3 C 0.16 3.06 2.94 -66.95 -0.20 2.86 16 4 H 0.04 0.62 7.71 -51.93 -0.40 0.22 16 5 C 0.14 2.39 2.02 -66.10 -0.13 2.26 16 6 H 0.09 1.81 7.18 -51.93 -0.37 1.44 16 7 N -0.71 -9.34 4.81 -52.03 -0.25 -9.59 16 8 C 0.50 7.01 7.22 -10.99 -0.08 6.93 16 9 O -0.52 -9.83 16.06 5.55 0.09 -9.74 16 10 C 0.14 1.49 3.73 -69.08 -0.26 1.23 16 11 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 12 C -0.16 -1.07 8.73 37.16 0.32 -0.74 16 13 N -0.35 -4.47 3.02 -55.99 -0.17 -4.63 16 14 C 0.07 0.76 10.57 -17.22 -0.18 0.58 16 15 C -0.28 -2.97 10.80 -40.01 -0.43 -3.41 16 16 C 0.04 0.53 12.02 -17.37 -0.21 0.32 16 17 N -0.29 -4.17 12.58 30.62 0.39 -3.78 16 18 C -0.16 -3.03 6.77 -24.58 -0.17 -3.20 16 19 C 0.17 4.15 5.41 -2.52 -0.01 4.14 16 20 N -0.59 -14.28 3.13 -162.57 -0.51 -14.79 16 21 C -0.23 -6.07 9.75 -15.06 -0.15 -6.22 16 22 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 23 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 24 N -0.92 -26.27 10.57 55.49 0.59 -25.68 16 25 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 34 H 0.40 4.10 7.78 -40.82 -0.32 3.78 16 35 H 0.07 0.49 7.15 -51.93 -0.37 0.12 16 36 H 0.09 0.46 7.56 -51.93 -0.39 0.06 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.17 1.38 7.26 -52.49 -0.38 1.00 16 39 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.97 6.93 -51.93 -0.36 1.61 16 44 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -33.85 365.60 -7.91 -41.77 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.16 Total: 4.01 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.38 Total: 0.46 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.04 Total: -58.49 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.85 -7.91 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087508399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.222 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds