Wall clock time and date at job start Tue Mar 31 2020 03:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35563 * 125.82403 * 2 1 4 4 N 1.35406 * 107.16104 * 180.26078 * 3 2 1 5 5 H 0.97001 * 126.44318 * 179.97438 * 4 3 2 6 6 C 1.36672 * 107.12032 * 0.02562 * 4 3 2 7 7 C 1.47401 * 125.86388 * 180.02562 * 6 4 3 8 8 O 1.21606 * 120.00037 * 7.22646 * 7 6 4 9 9 N 1.34776 * 120.00082 * 187.22799 * 7 6 4 10 10 C 1.46927 * 120.62931 * 6.96453 * 9 7 6 11 11 C 1.53627 * 108.53841 * 126.36998 * 10 9 7 12 12 C 1.53032 * 109.24525 * 54.85884 * 11 10 9 13 13 H 1.09003 * 109.46539 * 178.49154 * 12 11 10 14 14 C 1.53002 * 109.45180 * 58.52097 * 12 11 10 15 15 C 1.53041 * 109.53668 * 298.50838 * 12 11 10 16 16 H 1.09000 * 109.50168 * 301.41047 * 15 12 11 17 17 C 1.53005 * 109.52577 * 181.33295 * 15 12 11 18 18 N 1.46493 * 109.47169 * 175.14473 * 17 15 12 19 19 C 1.36938 * 119.99829 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00275 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99938 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99965 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47320 * 89.99513 * 23 21 19 25 25 H 1.48498 * 109.47208 * 209.99738 * 23 21 19 26 26 H 1.48500 * 109.47163 * 329.99518 * 23 21 19 27 27 C 1.46932 * 120.63154 * 187.24754 * 9 7 6 28 28 N 1.31615 * 108.26952 * 359.97438 * 6 4 3 29 29 H 1.08999 * 109.47187 * 269.71556 * 1 2 3 30 30 H 1.08995 * 109.47124 * 29.71148 * 1 2 3 31 31 H 1.09001 * 109.47537 * 149.71684 * 1 2 3 32 32 H 1.07999 * 126.41977 * 0.24602 * 3 2 1 33 33 H 1.08998 * 109.58749 * 246.19833 * 10 9 7 34 34 H 1.08995 * 109.58511 * 6.63048 * 10 9 7 35 35 H 1.08996 * 109.63580 * 294.86028 * 11 10 9 36 36 H 1.09003 * 109.45351 * 174.73893 * 11 10 9 37 37 H 1.09003 * 109.47284 * 299.94253 * 14 12 11 38 38 H 1.09000 * 109.46985 * 59.94036 * 14 12 11 39 39 H 1.08995 * 109.47642 * 179.97438 * 14 12 11 40 40 H 1.09007 * 109.47027 * 295.14811 * 17 15 12 41 41 H 1.08996 * 109.47107 * 55.14283 * 17 15 12 42 42 H 0.96997 * 120.00151 * 0.02562 * 18 17 15 43 43 H 0.97000 * 120.00066 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.58727 * 353.37314 * 27 9 7 45 45 H 1.08996 * 109.58855 * 113.80009 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 -0.0059 5 1 4.3789 1.2208 -0.0077 6 6 3.5465 -0.7003 -0.0100 7 6 4.7173 -1.5957 -0.0164 8 8 5.8354 -1.1356 0.1141 9 7 4.5488 -2.9244 -0.1668 10 6 3.2247 -3.4807 -0.4770 11 6 3.3460 -4.3605 -1.7305 12 6 4.4325 -5.4140 -1.5042 13 1 4.5031 -6.0573 -2.3813 14 6 4.0755 -6.2592 -0.2797 15 6 5.7769 -4.7209 -1.2708 16 1 6.0200 -4.0990 -2.1324 17 6 6.8690 -5.7749 -1.0775 18 7 8.1719 -5.1140 -0.9700 19 6 9.3057 -5.8608 -0.7911 20 1 9.2394 -6.9370 -0.7297 21 6 10.5405 -5.2347 -0.6898 22 7 11.6303 -5.9525 -0.5183 23 14 10.6553 -3.3733 -0.7967 24 1 10.5263 -2.7904 0.5630 25 1 11.9678 -2.9909 -1.3767 26 1 9.5632 -2.8589 -1.6615 27 6 5.6844 -3.8448 -0.0176 28 7 2.2860 -1.0792 -0.0061 29 1 -0.3633 -0.0051 1.0276 30 1 -0.3633 0.8925 -0.5093 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9711 2.1277 0.0037 33 1 2.8752 -4.0819 0.3623 34 1 2.5223 -2.6688 -0.6652 35 1 3.6118 -3.7420 -2.5878 36 1 2.3934 -4.8552 -1.9203 37 1 4.0054 -5.6162 0.5977 38 1 3.1181 -6.7530 -0.4457 39 1 4.8490 -7.0100 -0.1184 40 1 6.6717 -6.3397 -0.1663 41 1 6.8747 -6.4529 -1.9310 42 1 8.2315 -4.1475 -1.0248 43 1 12.4931 -5.5149 -0.4471 44 1 6.6054 -3.2731 0.0975 45 1 5.5313 -4.4751 0.8584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133158708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:42 Heat of formation + Delta-G solvation = 42.018953 kcal Electronic energy + Delta-G solvation = -25973.392733 eV Core-core repulsion = 22413.388072 eV Total energy + Delta-G solvation = -3560.004661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.63726 -40.15269 -38.07448 -35.15703 -33.86260 -33.35737 -31.95431 -31.50231 -30.11754 -27.95296 -27.36322 -25.85133 -24.89756 -23.00282 -22.82335 -21.06814 -20.74178 -20.36486 -18.81648 -17.69705 -17.44237 -16.65485 -16.06496 -15.90088 -15.13766 -14.91696 -14.76831 -14.39300 -14.20942 -13.81253 -13.77039 -13.42908 -13.25915 -13.10370 -12.92388 -12.64380 -12.62471 -12.43662 -12.08463 -11.67745 -11.49910 -11.13266 -11.04186 -10.80346 -10.71890 -10.48776 -10.37773 -10.34643 -10.12334 -10.03143 -9.57403 -9.48193 -8.84528 -8.81273 -8.46654 -7.16419 -5.71211 -3.06246 1.11853 2.24756 2.33773 3.18892 3.23415 3.46286 3.51506 3.54062 3.91493 4.50283 4.66640 4.68399 4.82646 4.85348 4.94242 4.95684 5.18088 5.35109 5.36614 5.37997 5.46572 5.54368 5.59813 5.60840 5.62260 5.70368 5.74449 5.84988 5.90066 5.96914 6.00048 6.08758 6.26440 6.30241 6.34676 6.36086 6.48213 6.63961 6.72177 6.82498 6.86538 7.28387 7.50095 8.02352 8.05114 8.48002 9.27379 10.00314 10.19844 11.47186 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.004035 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.671273 B = 6936.990840 C = 8300.862120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.005 4.005 3 C -0.027 4.027 4 N -0.523 5.523 5 H 0.432 0.568 6 C 0.162 3.838 7 C 0.597 3.403 8 O -0.539 6.539 9 N -0.581 5.581 10 C 0.073 3.927 11 C -0.127 4.127 12 C -0.086 4.086 13 H 0.074 0.926 14 C -0.153 4.153 15 C -0.105 4.105 16 H 0.073 0.927 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.935 5.935 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.118 3.882 28 N -0.438 5.438 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.185 0.815 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.096 0.904 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.778 12.278 0.032 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.138 4.138 3 C -0.165 4.165 4 N -0.124 5.124 5 H 0.271 0.729 6 C -0.100 4.100 7 C 0.382 3.618 8 O -0.416 6.416 9 N -0.312 5.312 10 C -0.049 4.049 11 C -0.165 4.165 12 C -0.105 4.105 13 H 0.092 0.908 14 C -0.210 4.210 15 C -0.125 4.125 16 H 0.091 0.909 17 C 0.037 3.963 18 N -0.403 5.403 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.584 5.584 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.003 4.003 28 N -0.162 5.162 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.202 0.798 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.252 11.471 0.139 28.649 hybrid contribution 0.942 2.428 -0.087 2.606 sum -25.310 13.899 0.052 28.875 Atomic orbital electron populations 1.20061 0.86972 1.02982 1.02528 1.21030 0.97089 0.88205 1.07508 1.22717 0.82952 1.01044 1.09836 1.42907 1.09316 1.07577 1.52623 0.72874 1.22743 0.93717 0.82281 1.11233 1.16594 0.85385 0.81961 0.77884 1.90883 1.23962 1.75427 1.51302 1.47811 1.11365 1.04507 1.67528 1.22889 0.84338 1.00534 0.97119 1.22023 0.99121 0.97445 0.97954 1.21087 0.93928 0.96375 0.99079 0.90770 1.21990 1.01251 0.99935 0.97841 1.21740 0.95434 0.97486 0.97840 0.90857 1.20674 0.83822 0.92987 0.98814 1.42793 1.02868 1.05050 1.89627 1.19050 0.83977 0.92466 1.41733 0.89188 1.24649 0.95337 0.97139 1.01929 1.69704 0.97707 1.34093 1.56850 0.86593 0.76833 0.87282 0.78158 1.20927 1.21775 1.20261 1.21866 0.88980 0.91270 0.98226 1.69891 0.99292 1.29566 1.17415 0.91154 0.91143 0.90844 0.79756 0.91283 0.84378 0.91953 0.90809 0.92422 0.92986 0.91752 0.94959 0.95194 0.80556 0.93120 0.88611 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.00 0.38 -0.01 16 2 C -0.01 -0.05 7.07 -83.00 -0.59 -0.64 16 3 C -0.03 -0.20 11.91 -16.93 -0.20 -0.40 16 4 N -0.52 -5.08 6.15 -10.78 -0.07 -5.15 16 5 H 0.43 3.47 8.96 -40.82 -0.37 3.10 16 6 C 0.16 2.07 7.66 -154.52 -1.18 0.89 16 7 C 0.60 9.40 7.68 -12.53 -0.10 9.30 16 8 O -0.54 -10.22 16.52 5.27 0.09 -10.13 16 9 N -0.58 -8.51 2.97 -173.78 -0.52 -9.03 16 10 C 0.07 0.86 5.65 -3.48 -0.02 0.84 16 11 C -0.13 -1.40 5.64 -26.39 -0.15 -1.55 16 12 C -0.09 -1.07 2.71 -90.58 -0.25 -1.31 16 13 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.15 -1.76 8.11 37.16 0.30 -1.46 16 15 C -0.11 -1.69 2.15 -90.50 -0.19 -1.88 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 17 C 0.16 3.21 5.19 -4.04 -0.02 3.19 16 18 N -0.76 -18.68 5.18 -59.91 -0.31 -19.00 16 19 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 20 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.94 -30.20 13.97 55.49 0.78 -29.43 16 23 Si 0.88 23.45 27.73 -169.99 -4.71 18.74 16 24 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 26 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 27 C 0.12 1.94 5.06 -3.71 -0.02 1.92 16 28 N -0.44 -5.10 7.66 -7.50 -0.06 -5.16 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.07 0.77 6.68 -51.93 -0.35 0.42 16 34 H 0.14 1.63 4.16 -61.56 -0.26 1.37 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.67 4.97 -51.93 -0.26 0.42 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 40 H 0.03 0.63 6.73 -51.93 -0.35 0.28 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.36 8.97 4.75 -40.82 -0.19 8.78 16 43 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 44 H 0.10 1.88 6.20 -51.93 -0.32 1.56 16 45 H 0.08 1.21 6.69 -51.93 -0.35 0.87 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -35.58 349.57 -8.43 -44.01 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.60 Total: 8.15 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.29 Total: 1.72 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -0.17 Total: -67.75 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.71 Total: 18.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.58 -8.43 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133158708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.025 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds