Wall clock time and date at job start Tue Mar 31 2020 03:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35563 * 125.82403 * 2 1 4 4 N 1.35406 * 107.16104 * 180.26078 * 3 2 1 5 5 H 0.97001 * 126.44318 * 179.97438 * 4 3 2 6 6 C 1.36672 * 107.12032 * 0.02562 * 4 3 2 7 7 C 1.47401 * 125.86388 * 180.02562 * 6 4 3 8 8 O 1.21606 * 120.00037 * 7.22646 * 7 6 4 9 9 N 1.34776 * 120.00082 * 187.22799 * 7 6 4 10 10 C 1.46927 * 120.62931 * 6.96453 * 9 7 6 11 11 C 1.53627 * 108.53841 * 126.36998 * 10 9 7 12 12 C 1.53032 * 109.24525 * 54.85884 * 11 10 9 13 13 H 1.09003 * 109.46539 * 178.49154 * 12 11 10 14 14 C 1.53002 * 109.45180 * 58.52097 * 12 11 10 15 15 C 1.53041 * 109.53668 * 298.50838 * 12 11 10 16 16 H 1.09000 * 109.50168 * 301.41047 * 15 12 11 17 17 C 1.53005 * 109.52577 * 181.33295 * 15 12 11 18 18 N 1.46493 * 109.47169 * 175.14473 * 17 15 12 19 19 C 1.36938 * 119.99829 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00275 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99938 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99965 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47320 * 89.99513 * 23 21 19 25 25 H 1.48498 * 109.47208 * 209.99738 * 23 21 19 26 26 H 1.48500 * 109.47163 * 329.99518 * 23 21 19 27 27 C 1.46932 * 120.63154 * 187.24754 * 9 7 6 28 28 N 1.31615 * 108.26952 * 359.97438 * 6 4 3 29 29 H 1.08999 * 109.47187 * 269.71556 * 1 2 3 30 30 H 1.08995 * 109.47124 * 29.71148 * 1 2 3 31 31 H 1.09001 * 109.47537 * 149.71684 * 1 2 3 32 32 H 1.07999 * 126.41977 * 0.24602 * 3 2 1 33 33 H 1.08998 * 109.58749 * 246.19833 * 10 9 7 34 34 H 1.08995 * 109.58511 * 6.63048 * 10 9 7 35 35 H 1.08996 * 109.63580 * 294.86028 * 11 10 9 36 36 H 1.09003 * 109.45351 * 174.73893 * 11 10 9 37 37 H 1.09003 * 109.47284 * 299.94253 * 14 12 11 38 38 H 1.09000 * 109.46985 * 59.94036 * 14 12 11 39 39 H 1.08995 * 109.47642 * 179.97438 * 14 12 11 40 40 H 1.09007 * 109.47027 * 295.14811 * 17 15 12 41 41 H 1.08996 * 109.47107 * 55.14283 * 17 15 12 42 42 H 0.96997 * 120.00151 * 0.02562 * 18 17 15 43 43 H 0.97000 * 120.00066 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.58727 * 353.37314 * 27 9 7 45 45 H 1.08996 * 109.58855 * 113.80009 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 -0.0059 5 1 4.3789 1.2208 -0.0077 6 6 3.5465 -0.7003 -0.0100 7 6 4.7173 -1.5957 -0.0164 8 8 5.8354 -1.1356 0.1141 9 7 4.5488 -2.9244 -0.1668 10 6 3.2247 -3.4807 -0.4770 11 6 3.3460 -4.3605 -1.7305 12 6 4.4325 -5.4140 -1.5042 13 1 4.5031 -6.0573 -2.3813 14 6 4.0755 -6.2592 -0.2797 15 6 5.7769 -4.7209 -1.2708 16 1 6.0200 -4.0990 -2.1324 17 6 6.8690 -5.7749 -1.0775 18 7 8.1719 -5.1140 -0.9700 19 6 9.3057 -5.8608 -0.7911 20 1 9.2394 -6.9370 -0.7297 21 6 10.5405 -5.2347 -0.6898 22 7 11.6303 -5.9525 -0.5183 23 14 10.6553 -3.3733 -0.7967 24 1 10.5263 -2.7904 0.5630 25 1 11.9678 -2.9909 -1.3767 26 1 9.5632 -2.8589 -1.6615 27 6 5.6844 -3.8448 -0.0176 28 7 2.2860 -1.0792 -0.0061 29 1 -0.3633 -0.0051 1.0276 30 1 -0.3633 0.8925 -0.5093 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9711 2.1277 0.0037 33 1 2.8752 -4.0819 0.3623 34 1 2.5223 -2.6688 -0.6652 35 1 3.6118 -3.7420 -2.5878 36 1 2.3934 -4.8552 -1.9203 37 1 4.0054 -5.6162 0.5977 38 1 3.1181 -6.7530 -0.4457 39 1 4.8490 -7.0100 -0.1184 40 1 6.6717 -6.3397 -0.1663 41 1 6.8747 -6.4529 -1.9310 42 1 8.2315 -4.1475 -1.0248 43 1 12.4931 -5.5149 -0.4471 44 1 6.6054 -3.2731 0.0975 45 1 5.5313 -4.4751 0.8584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133158708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:41 Heat of formation + Delta-G solvation = 17.386882 kcal Electronic energy + Delta-G solvation = -25974.460860 eV Core-core repulsion = 22413.388072 eV Total energy + Delta-G solvation = -3561.072788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.40349 -41.29514 -39.29977 -36.84325 -35.14091 -34.18525 -33.68476 -32.48550 -31.61910 -28.89216 -28.37091 -27.15583 -25.99670 -24.61657 -23.89780 -22.59591 -21.58597 -21.24491 -20.15513 -19.30432 -18.66420 -17.73918 -17.06606 -16.93362 -16.78973 -16.17180 -15.98274 -15.74394 -15.28265 -15.02963 -15.00223 -14.64066 -14.60618 -14.22135 -14.02590 -13.86757 -13.54927 -13.41919 -13.21882 -13.01743 -12.90870 -12.67430 -12.50529 -12.20655 -12.09657 -11.88660 -11.80246 -11.56610 -11.48618 -11.30698 -11.24072 -11.01421 -10.45538 -9.78748 -9.36018 -9.32051 -8.07707 -5.39409 0.23475 1.31347 1.34418 1.39866 1.42455 1.51063 2.19639 2.36360 2.41768 3.04677 3.24289 3.48884 3.74329 3.80192 3.84498 3.98289 4.10140 4.11268 4.27837 4.35361 4.41891 4.50565 4.56349 4.73094 4.77506 4.79559 4.87264 4.91713 4.99937 5.01000 5.05026 5.08067 5.14396 5.20952 5.24276 5.28038 5.39227 5.47898 5.58683 5.72645 5.81543 6.12154 6.17448 6.21460 6.66318 6.94877 7.03024 7.80439 7.97426 9.14009 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.004035 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.671273 B = 6936.990840 C = 8300.862120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.026 4.026 3 C 0.002 3.998 4 N -0.518 5.518 5 H 0.437 0.563 6 C 0.119 3.881 7 C 0.590 3.410 8 O -0.586 6.586 9 N -0.580 5.580 10 C 0.074 3.926 11 C -0.119 4.119 12 C -0.080 4.080 13 H 0.083 0.917 14 C -0.150 4.150 15 C -0.093 4.093 16 H 0.058 0.942 17 C 0.162 3.838 18 N -0.762 5.762 19 C -0.229 4.229 20 H 0.065 0.935 21 C -0.057 4.057 22 N -0.980 5.980 23 Si 0.944 3.056 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.266 1.266 27 C 0.122 3.878 28 N -0.441 5.441 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.032 0.968 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.630 14.105 -0.377 33.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.159 4.159 3 C -0.138 4.138 4 N -0.120 5.120 5 H 0.278 0.722 6 C -0.140 4.140 7 C 0.377 3.623 8 O -0.467 6.467 9 N -0.311 5.311 10 C -0.047 4.047 11 C -0.157 4.157 12 C -0.099 4.099 13 H 0.101 0.899 14 C -0.207 4.207 15 C -0.113 4.113 16 H 0.076 0.924 17 C 0.036 3.964 18 N -0.408 5.408 19 C -0.360 4.360 20 H 0.083 0.917 21 C -0.248 4.248 22 N -0.631 5.631 23 Si 0.773 3.227 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.191 1.191 27 C 0.000 4.000 28 N -0.166 5.166 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.194 0.806 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -30.164 13.273 -0.285 32.956 hybrid contribution 1.977 1.857 0.061 2.713 sum -28.187 15.130 -0.225 31.992 Atomic orbital electron populations 1.20162 0.84610 1.04116 1.03302 1.21709 0.98637 0.87907 1.07662 1.23545 0.81509 1.02780 1.05939 1.43016 1.10560 1.06703 1.51760 0.72214 1.22101 0.93085 0.83134 1.15679 1.17025 0.85836 0.82459 0.76964 1.90835 1.25963 1.76269 1.53611 1.47867 1.11744 1.04243 1.67198 1.23078 0.82850 1.00926 0.97866 1.22001 0.99875 0.96739 0.97114 1.21083 0.92055 0.96787 0.99994 0.89911 1.21962 1.02208 0.99433 0.97075 1.21605 0.96378 0.96378 0.96951 0.92353 1.20864 0.82656 0.93945 0.98916 1.42879 1.03567 1.04932 1.89390 1.19082 0.85477 0.91753 1.39676 0.91696 1.25341 0.95155 1.01479 1.02869 1.69847 0.98266 1.35945 1.59026 0.85570 0.77001 0.82011 0.78128 1.20974 1.21491 1.19120 1.21624 0.88527 0.91201 0.98642 1.69771 0.99013 1.31000 1.16851 0.90470 0.88603 0.91199 0.75237 0.90293 0.83854 0.92683 0.87619 0.92724 0.90310 0.93043 0.94394 0.95016 0.80627 0.93248 0.92291 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.42 71.24 0.74 0.24 16 2 C -0.03 -0.38 7.07 41.75 0.30 -0.09 16 3 C 0.00 0.02 11.91 83.52 0.99 1.02 16 4 N -0.52 -9.21 6.15 -188.02 -1.16 -10.36 16 5 H 0.44 6.55 8.96 -92.71 -0.83 5.72 16 6 C 0.12 2.95 7.66 136.27 1.04 4.00 16 7 C 0.59 18.95 7.68 86.66 0.67 19.61 16 8 O -0.59 -23.22 16.52 -4.05 -0.07 -23.28 16 9 N -0.58 -17.00 2.97 -821.96 -2.44 -19.44 16 10 C 0.07 1.61 5.65 86.51 0.49 2.10 16 11 C -0.12 -2.32 5.64 30.82 0.17 -2.14 16 12 C -0.08 -1.85 2.71 -10.77 -0.03 -1.88 16 13 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 14 C -0.15 -3.11 8.11 71.98 0.58 -2.53 16 15 C -0.09 -2.98 2.15 -10.71 -0.02 -3.00 16 16 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 17 C 0.16 6.38 5.19 86.38 0.45 6.82 16 18 N -0.76 -38.23 5.18 -343.45 -1.78 -40.01 16 19 C -0.23 -13.67 10.47 84.03 0.88 -12.79 16 20 H 0.07 4.15 8.06 -2.91 -0.02 4.12 16 21 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 22 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 23 Si 0.94 49.73 27.73 68.60 1.90 51.63 16 24 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 25 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 26 H -0.27 -13.35 6.52 99.48 0.65 -12.70 16 27 C 0.12 4.10 5.06 86.36 0.44 4.54 16 28 N -0.44 -9.49 7.66 -177.64 -1.36 -10.85 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.23 0.35 8.06 -2.91 -0.02 0.33 16 33 H 0.08 1.58 6.68 -2.39 -0.02 1.57 16 34 H 0.14 3.11 4.16 -21.40 -0.09 3.02 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.17 4.97 -2.39 -0.01 1.16 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.20 6.57 -2.39 -0.02 1.19 16 40 H 0.04 1.47 6.73 -2.38 -0.02 1.46 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.36 18.19 4.75 -92.71 -0.44 17.75 16 43 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 44 H 0.06 2.42 6.20 -2.39 -0.01 2.41 16 45 H 0.08 2.62 6.69 -2.39 -0.02 2.61 16 Total: -1.00 -80.33 349.57 2.19 -78.14 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.38 Total: 25.98 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 7.17 Total: 12.85 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -6.43 Total: -145.32 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.90 Total: 51.63 kcal Total: -80.33 2.19 -78.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133158708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.526 kcal (2) G-P(sol) polarization free energy of solvation -80.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds