Wall clock time and date at job start Tue Mar 31 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99301 * 2 1 4 4 N 1.46905 * 109.47256 * 124.29192 * 3 2 1 5 5 C 1.46894 * 110.99652 * 297.34673 * 4 3 2 6 6 C 1.50702 * 109.47043 * 293.13828 * 5 4 3 7 7 H 1.08007 * 119.99957 * 354.97842 * 6 5 4 8 8 C 1.37875 * 120.00382 * 174.98069 * 6 5 4 9 9 N 1.31516 * 119.99521 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00325 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47257 * 89.99974 * 10 8 6 12 12 H 1.48500 * 109.47270 * 209.99670 * 10 8 6 13 13 H 1.48501 * 109.47149 * 329.99621 * 10 8 6 14 14 C 1.46905 * 110.99478 * 61.29607 * 4 3 2 15 15 H 1.09001 * 109.47355 * 296.04157 * 14 4 3 16 16 C 1.53000 * 109.46419 * 176.04632 * 14 4 3 17 17 C 1.50697 * 109.47221 * 56.04945 * 14 4 3 18 18 N 1.31419 * 119.33146 * 44.99801 * 17 14 4 19 19 C 1.34689 * 120.30239 * 179.97438 * 18 17 14 20 20 N 1.31253 * 120.48216 * 180.02562 * 19 18 17 21 21 N 1.38203 * 119.03590 * 359.97438 * 19 18 17 22 22 H 0.97001 * 120.62942 * 179.97438 * 21 19 18 23 23 C 1.36518 * 118.74505 * 359.97438 * 21 19 18 24 24 N 1.36539 * 120.19686 * 179.97438 * 23 21 19 25 25 C 1.46501 * 119.99532 * 0.02562 * 24 23 21 26 26 C 1.46497 * 120.00564 * 180.02562 * 24 23 21 27 27 N 1.32356 * 119.61744 * 0.02562 * 23 21 19 28 28 H 1.08002 * 119.99307 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00664 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00664 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47345 * 4.28876 * 3 2 1 32 32 H 1.09005 * 109.47073 * 244.29043 * 3 2 1 33 33 H 1.09000 * 109.47674 * 53.13924 * 5 4 3 34 34 H 1.09005 * 109.46864 * 173.14072 * 5 4 3 35 35 H 0.97004 * 119.99865 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46823 * 179.97438 * 16 14 4 37 37 H 1.09001 * 109.47711 * 299.99727 * 16 14 4 38 38 H 1.09005 * 109.47227 * 60.00190 * 16 14 4 39 39 H 0.97004 * 120.00287 * 359.97438 * 20 19 18 40 40 H 1.08994 * 109.47215 * 59.99781 * 25 24 23 41 41 H 1.08998 * 109.47450 * 180.02562 * 25 24 23 42 42 H 1.09006 * 109.46989 * 299.99814 * 25 24 23 43 43 H 1.09006 * 109.46666 * 89.99881 * 26 24 23 44 44 H 1.08994 * 109.46981 * 209.99796 * 26 24 23 45 45 H 1.08997 * 109.46597 * 330.00436 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9840 1.3393 1.1443 5 6 2.2478 1.2810 2.4141 6 6 1.4426 2.5432 2.5862 7 1 1.5366 3.3457 1.8695 8 6 0.5859 2.6735 3.6586 9 7 0.4711 1.6961 4.5310 10 14 -0.4127 4.2377 3.8716 11 1 -1.7128 4.0946 3.1686 12 1 -0.6553 4.4772 5.3170 13 1 0.3362 5.3850 3.2987 14 6 3.9714 0.2549 1.0579 15 1 3.4618 -0.7065 1.1228 16 6 4.9700 0.3817 2.2101 17 6 4.7051 0.3470 -0.2552 18 7 5.1362 1.5167 -0.6711 19 6 5.7947 1.6215 -1.8413 20 7 6.2272 2.7879 -2.2598 21 7 6.0092 0.4828 -2.5945 22 1 6.4804 0.5317 -3.4410 23 6 5.5454 -0.7122 -2.1248 24 7 5.7405 -1.8556 -2.8450 25 6 6.4499 -1.8025 -4.1257 26 6 5.2406 -3.1356 -2.3372 27 7 4.9047 -0.7558 -0.9675 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3575 2.1322 0.0768 32 1 2.6311 1.3970 -0.9260 33 1 1.5781 0.4210 2.4068 34 1 2.9536 1.1849 3.2392 35 1 -0.1319 1.7877 5.2854 36 1 5.7023 -0.4232 2.1464 37 1 5.4796 1.3430 2.1453 38 1 4.4392 0.3151 3.1599 39 1 6.0731 3.5826 -1.7254 40 1 7.4566 -1.4157 -3.9677 41 1 6.5077 -2.8044 -4.5509 42 1 5.9126 -1.1475 -4.8117 43 1 4.2251 -3.2981 -2.6986 44 1 5.8845 -3.9420 -2.6879 45 1 5.2401 -3.1187 -1.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428856445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:24 Heat of formation + Delta-G solvation = 133.284898 kcal Electronic energy + Delta-G solvation = -26144.699743 eV Core-core repulsion = 22620.945422 eV Total energy + Delta-G solvation = -3523.754321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.186 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42868 -38.32324 -37.31173 -35.09950 -33.55657 -32.84203 -32.41423 -30.64544 -29.75443 -28.55533 -27.25888 -26.79237 -24.43504 -24.24275 -22.09723 -21.68428 -20.33102 -19.03030 -18.59033 -18.39009 -17.09612 -16.41593 -16.18141 -15.68346 -15.14193 -15.08835 -14.74813 -14.55567 -14.19579 -14.08935 -13.46244 -13.23384 -13.11170 -12.56207 -12.47259 -12.13622 -12.05789 -11.87078 -11.70108 -11.50467 -11.25225 -10.90857 -10.78710 -10.70377 -10.61247 -10.36945 -10.20748 -9.82566 -9.44647 -9.17035 -9.14440 -9.08311 -8.63717 -8.31584 -7.75900 -7.09997 -5.92895 -3.92013 0.97196 1.79622 2.08672 2.76803 2.97481 3.38370 3.44653 3.50264 4.00351 4.06611 4.34910 4.49461 4.54911 4.63940 4.76501 4.95950 5.11265 5.17325 5.41360 5.42868 5.53487 5.59788 5.62212 5.71734 5.79271 5.91848 6.08677 6.12200 6.29230 6.31297 6.39262 6.47173 6.52516 6.76235 6.83147 7.15185 7.25188 7.33975 7.37547 7.43337 7.53716 7.91220 8.16720 8.28679 8.41004 8.63575 8.76824 9.15588 9.70883 11.17898 Molecular weight = 306.19amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.003941 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.779417 B = 7102.735271 C = 7535.251635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.181 4.181 3 C 0.095 3.905 4 N -0.506 5.506 5 C 0.188 3.812 6 C -0.498 4.498 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.144 3.856 15 H 0.061 0.939 16 C -0.137 4.137 17 C 0.447 3.553 18 N -0.579 5.579 19 C 0.555 3.445 20 N -0.770 5.770 21 N -0.659 5.659 22 H 0.414 0.586 23 C 0.664 3.336 24 N -0.590 5.590 25 C 0.074 3.926 26 C 0.100 3.900 27 N -0.638 5.638 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.003 0.997 34 H 0.034 0.966 35 H 0.259 0.741 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.360 0.640 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.033 -12.749 -16.415 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.201 4.201 3 C -0.034 4.034 4 N -0.230 5.230 5 C 0.064 3.936 6 C -0.537 4.537 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C 0.033 3.967 15 H 0.078 0.922 16 C -0.195 4.195 17 C 0.169 3.831 18 N -0.313 5.313 19 C 0.184 3.816 20 N -0.412 5.412 21 N -0.295 5.295 22 H 0.252 0.748 23 C 0.304 3.696 24 N -0.307 5.307 25 C -0.069 4.069 26 C -0.042 4.042 27 N -0.381 5.381 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.180 0.820 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.393 -11.886 -16.412 23.247 hybrid contribution -0.897 0.169 -0.161 0.927 sum 10.495 -11.717 -16.572 22.849 Atomic orbital electron populations 1.23676 0.95999 1.01014 1.00971 1.23624 0.96746 0.99890 0.99851 1.21200 0.94445 0.94451 0.93263 1.62433 1.15240 1.40860 1.04461 1.19875 0.92169 0.97099 0.84458 1.21117 1.22169 1.01296 1.09099 0.91975 1.24922 0.97088 0.96437 0.95980 1.69957 1.38151 1.31939 1.13854 0.86574 0.80359 0.83905 0.77058 1.20910 1.21399 1.19790 1.20314 0.93358 0.95666 0.87320 0.92174 1.21835 0.97976 1.01940 0.97742 1.23094 0.84734 0.82566 0.92742 1.70404 1.21141 1.26479 1.13263 1.20298 0.89846 0.87278 0.84163 1.69590 1.33482 0.98775 1.39316 1.43297 1.55096 1.06173 1.24935 0.74787 1.19059 0.83752 0.79861 0.86921 1.45883 1.58819 1.05100 1.20879 1.21979 0.96515 1.04919 0.83447 1.21846 0.99117 0.80858 1.02393 1.68519 1.30112 1.32895 1.06608 0.89770 0.88544 0.88445 0.89506 0.93037 0.97879 0.94768 0.93125 0.93355 0.91234 0.90340 0.82041 0.91491 0.88504 0.91484 0.91953 0.90739 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 14.32 29.01 0.42 -2.88 16 2 C -0.18 -3.48 7.54 -36.03 -0.27 -3.75 16 3 C 0.09 1.99 5.30 -4.97 -0.03 1.96 16 4 N -0.51 -11.20 4.38 -230.90 -1.01 -12.21 16 5 C 0.19 4.83 4.38 -4.98 -0.02 4.81 16 6 C -0.50 -14.00 8.38 -34.44 -0.29 -14.29 16 7 H 0.06 1.77 7.37 -52.48 -0.39 1.39 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.14 2.74 2.11 -68.86 -0.15 2.60 16 15 H 0.06 1.14 6.63 -51.93 -0.34 0.80 16 16 C -0.14 -2.44 8.97 37.16 0.33 -2.11 16 17 C 0.45 7.91 5.07 -156.65 -0.79 7.12 16 18 N -0.58 -10.96 9.76 -11.47 -0.11 -11.07 16 19 C 0.56 9.37 8.78 -321.79 -2.82 6.55 16 20 N -0.77 -13.26 14.19 29.90 0.42 -12.84 16 21 N -0.66 -8.29 5.39 -14.36 -0.08 -8.36 16 22 H 0.41 3.97 7.38 -40.82 -0.30 3.67 16 23 C 0.66 8.02 8.24 -320.25 -2.64 5.39 16 24 N -0.59 -4.52 3.32 -191.33 -0.64 -5.15 16 25 C 0.07 0.27 9.53 59.85 0.57 0.84 16 26 C 0.10 0.60 10.41 59.85 0.62 1.23 16 27 N -0.64 -9.51 9.06 -11.22 -0.10 -9.61 16 28 H 0.08 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.10 1.84 7.84 -52.49 -0.41 1.43 16 30 H 0.10 1.78 6.92 -52.49 -0.36 1.42 16 31 H 0.09 1.98 6.60 -51.93 -0.34 1.63 16 32 H 0.05 1.07 6.60 -51.93 -0.34 0.73 16 33 H 0.00 0.09 6.96 -51.93 -0.36 -0.27 16 34 H 0.03 0.92 5.80 -51.93 -0.30 0.62 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.47 6.18 -51.93 -0.32 1.15 16 39 H 0.36 6.38 8.91 -40.82 -0.36 6.01 16 40 H 0.07 0.21 8.00 -51.93 -0.42 -0.21 16 41 H 0.10 0.12 7.79 -51.93 -0.40 -0.28 16 42 H 0.07 0.23 8.00 -51.93 -0.42 -0.19 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 45 H 0.09 0.74 7.35 -51.93 -0.38 0.36 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -33.73 365.79 -12.14 -45.88 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.69 Total: 7.74 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -5.17 Total: 8.97 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -0.78 Total: -85.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.73 -12.14 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.164 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds