Wall clock time and date at job start Tue Mar 31 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99301 * 2 1 4 4 N 1.46905 * 109.47256 * 124.29192 * 3 2 1 5 5 C 1.46894 * 110.99652 * 297.34673 * 4 3 2 6 6 C 1.50702 * 109.47043 * 293.13828 * 5 4 3 7 7 H 1.08007 * 119.99957 * 354.97842 * 6 5 4 8 8 C 1.37875 * 120.00382 * 174.98069 * 6 5 4 9 9 N 1.31516 * 119.99521 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00325 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47257 * 89.99974 * 10 8 6 12 12 H 1.48500 * 109.47270 * 209.99670 * 10 8 6 13 13 H 1.48501 * 109.47149 * 329.99621 * 10 8 6 14 14 C 1.46905 * 110.99478 * 61.29607 * 4 3 2 15 15 H 1.09001 * 109.47355 * 296.04157 * 14 4 3 16 16 C 1.53000 * 109.46419 * 176.04632 * 14 4 3 17 17 C 1.50697 * 109.47221 * 56.04945 * 14 4 3 18 18 N 1.31419 * 119.33146 * 44.99801 * 17 14 4 19 19 C 1.34689 * 120.30239 * 179.97438 * 18 17 14 20 20 N 1.31253 * 120.48216 * 180.02562 * 19 18 17 21 21 N 1.38203 * 119.03590 * 359.97438 * 19 18 17 22 22 H 0.97001 * 120.62942 * 179.97438 * 21 19 18 23 23 C 1.36518 * 118.74505 * 359.97438 * 21 19 18 24 24 N 1.36539 * 120.19686 * 179.97438 * 23 21 19 25 25 C 1.46501 * 119.99532 * 0.02562 * 24 23 21 26 26 C 1.46497 * 120.00564 * 180.02562 * 24 23 21 27 27 N 1.32356 * 119.61744 * 0.02562 * 23 21 19 28 28 H 1.08002 * 119.99307 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00664 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00664 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47345 * 4.28876 * 3 2 1 32 32 H 1.09005 * 109.47073 * 244.29043 * 3 2 1 33 33 H 1.09000 * 109.47674 * 53.13924 * 5 4 3 34 34 H 1.09005 * 109.46864 * 173.14072 * 5 4 3 35 35 H 0.97004 * 119.99865 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46823 * 179.97438 * 16 14 4 37 37 H 1.09001 * 109.47711 * 299.99727 * 16 14 4 38 38 H 1.09005 * 109.47227 * 60.00190 * 16 14 4 39 39 H 0.97004 * 120.00287 * 359.97438 * 20 19 18 40 40 H 1.08994 * 109.47215 * 59.99781 * 25 24 23 41 41 H 1.08998 * 109.47450 * 180.02562 * 25 24 23 42 42 H 1.09006 * 109.46989 * 299.99814 * 25 24 23 43 43 H 1.09006 * 109.46666 * 89.99881 * 26 24 23 44 44 H 1.08994 * 109.46981 * 209.99796 * 26 24 23 45 45 H 1.08997 * 109.46597 * 330.00436 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9840 1.3393 1.1443 5 6 2.2478 1.2810 2.4141 6 6 1.4426 2.5432 2.5862 7 1 1.5366 3.3457 1.8695 8 6 0.5859 2.6735 3.6586 9 7 0.4711 1.6961 4.5310 10 14 -0.4127 4.2377 3.8716 11 1 -1.7128 4.0946 3.1686 12 1 -0.6553 4.4772 5.3170 13 1 0.3362 5.3850 3.2987 14 6 3.9714 0.2549 1.0579 15 1 3.4618 -0.7065 1.1228 16 6 4.9700 0.3817 2.2101 17 6 4.7051 0.3470 -0.2552 18 7 5.1362 1.5167 -0.6711 19 6 5.7947 1.6215 -1.8413 20 7 6.2272 2.7879 -2.2598 21 7 6.0092 0.4828 -2.5945 22 1 6.4804 0.5317 -3.4410 23 6 5.5454 -0.7122 -2.1248 24 7 5.7405 -1.8556 -2.8450 25 6 6.4499 -1.8025 -4.1257 26 6 5.2406 -3.1356 -2.3372 27 7 4.9047 -0.7558 -0.9675 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3575 2.1322 0.0768 32 1 2.6311 1.3970 -0.9260 33 1 1.5781 0.4210 2.4068 34 1 2.9536 1.1849 3.2392 35 1 -0.1319 1.7877 5.2854 36 1 5.7023 -0.4232 2.1464 37 1 5.4796 1.3430 2.1453 38 1 4.4392 0.3151 3.1599 39 1 6.0731 3.5826 -1.7254 40 1 7.4566 -1.4157 -3.9677 41 1 6.5077 -2.8044 -4.5509 42 1 5.9126 -1.1475 -4.8117 43 1 4.2251 -3.2981 -2.6986 44 1 5.8845 -3.9420 -2.6879 45 1 5.2401 -3.1187 -1.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428856445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:24 Heat of formation + Delta-G solvation = 113.270867 kcal Electronic energy + Delta-G solvation = -26145.567617 eV Core-core repulsion = 22620.945422 eV Total energy + Delta-G solvation = -3524.622195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.186 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53648 -39.69495 -38.39349 -36.38841 -34.77938 -34.65238 -34.04082 -31.85978 -31.35944 -29.20445 -29.02239 -27.66252 -26.13694 -25.70970 -23.40594 -23.04779 -21.85323 -20.17496 -20.00750 -19.51791 -18.40389 -18.04853 -17.33194 -16.81897 -16.75405 -16.37603 -16.14653 -15.83953 -15.55616 -15.31745 -15.15346 -14.20013 -13.96717 -13.78815 -13.57486 -13.46287 -13.29899 -13.10805 -13.03147 -12.84769 -12.76809 -12.68443 -12.37789 -12.25793 -12.17636 -12.06945 -12.02645 -11.74372 -11.20431 -10.76245 -10.49358 -10.35791 -10.20411 -9.89541 -8.95676 -8.87499 -8.11402 -6.17870 -0.17019 0.90499 0.93180 1.42262 1.43672 1.44630 1.55167 1.89308 2.45011 2.78154 2.91552 3.18453 3.21641 3.56014 4.00735 4.04968 4.18550 4.23580 4.30636 4.37633 4.39753 4.47579 4.49842 4.65944 4.72039 4.76534 4.78339 4.88002 4.93391 4.95454 5.05515 5.10896 5.29535 5.35089 5.42885 5.42986 5.55393 5.71394 5.72907 5.91781 6.13404 6.18115 6.29149 6.41424 6.68111 6.96401 7.13269 7.49466 7.51855 8.98889 Molecular weight = 306.19amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.003941 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.779417 B = 7102.735271 C = 7535.251635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.189 4.189 3 C 0.104 3.896 4 N -0.516 5.516 5 C 0.208 3.792 6 C -0.513 4.513 7 H 0.051 0.949 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.956 3.044 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.145 3.855 15 H 0.062 0.938 16 C -0.128 4.128 17 C 0.449 3.551 18 N -0.622 5.622 19 C 0.552 3.448 20 N -0.782 5.782 21 N -0.647 5.647 22 H 0.429 0.571 23 C 0.660 3.340 24 N -0.570 5.570 25 C 0.062 3.938 26 C 0.092 3.908 27 N -0.648 5.648 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.052 0.948 33 H -0.018 1.018 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.352 0.648 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.536 -14.534 -18.378 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.209 4.209 3 C -0.024 4.024 4 N -0.240 5.240 5 C 0.083 3.917 6 C -0.552 4.552 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.569 5.569 10 Si 0.781 3.219 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.035 3.965 15 H 0.080 0.920 16 C -0.186 4.186 17 C 0.171 3.829 18 N -0.359 5.359 19 C 0.181 3.819 20 N -0.424 5.424 21 N -0.284 5.284 22 H 0.270 0.730 23 C 0.300 3.700 24 N -0.284 5.284 25 C -0.079 4.079 26 C -0.049 4.049 27 N -0.393 5.393 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.000 1.000 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.149 0.851 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.132 0.868 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.928 -13.771 -18.467 25.941 hybrid contribution -0.989 0.560 0.323 1.182 sum 10.939 -13.210 -18.144 24.967 Atomic orbital electron populations 1.23846 0.95846 1.01822 0.99638 1.23542 0.97014 0.99315 1.01012 1.20998 0.93921 0.94687 0.92761 1.62272 1.15485 1.42931 1.03294 1.19475 0.91253 0.95244 0.85775 1.21347 1.22847 1.01915 1.09042 0.93100 1.25668 0.98045 0.99438 0.95587 1.70059 1.38840 1.33668 1.14310 0.85589 0.78972 0.80088 0.77218 1.20000 1.20689 1.19686 1.20280 0.92851 0.94442 0.88975 0.92008 1.21739 0.98038 1.02170 0.96685 1.22679 0.84610 0.83248 0.92373 1.70308 1.23109 1.27498 1.14957 1.20329 0.89354 0.88046 0.84197 1.69652 1.34600 0.98804 1.39317 1.43026 1.54991 1.05293 1.25093 0.72971 1.19324 0.83139 0.80923 0.86620 1.46377 1.56902 1.03966 1.21180 1.22398 0.96578 1.07444 0.81486 1.22081 1.00463 0.80820 1.01500 1.68460 1.31553 1.31455 1.07878 0.87073 0.89609 0.87216 0.92041 0.92935 1.00022 0.96410 0.92881 0.90585 0.92710 0.91807 0.82999 0.90390 0.85138 0.90780 0.91471 0.86807 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.33 14.32 67.78 0.97 -5.36 16 2 C -0.19 -7.27 7.54 25.64 0.19 -7.08 16 3 C 0.10 4.51 5.30 85.56 0.45 4.96 16 4 N -0.52 -23.63 4.38 -884.45 -3.87 -27.50 16 5 C 0.21 11.06 4.38 85.56 0.38 11.44 16 6 C -0.51 -29.66 8.38 25.60 0.21 -29.45 16 7 H 0.05 3.00 7.37 -2.91 -0.02 2.98 16 8 C 0.01 0.62 5.46 84.65 0.46 1.08 16 9 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 10 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.15 5.62 2.11 44.17 0.09 5.71 16 15 H 0.06 2.37 6.63 -2.39 -0.02 2.35 16 16 C -0.13 -4.69 8.97 71.98 0.65 -4.04 16 17 C 0.45 15.96 5.07 138.56 0.70 16.66 16 18 N -0.62 -23.90 9.76 -190.20 -1.86 -25.76 16 19 C 0.55 18.57 8.78 261.13 2.29 20.86 16 20 N -0.78 -27.10 14.19 -59.31 -0.84 -27.94 16 21 N -0.65 -15.30 5.39 -199.35 -1.08 -16.37 16 22 H 0.43 7.30 7.38 -92.71 -0.68 6.62 16 23 C 0.66 14.67 8.24 260.59 2.15 16.81 16 24 N -0.57 -6.84 3.32 -759.24 -2.52 -9.36 16 25 C 0.06 0.19 9.53 127.77 1.22 1.41 16 26 C 0.09 0.80 10.41 127.77 1.33 2.13 16 27 N -0.65 -18.70 9.06 -189.40 -1.72 -20.41 16 28 H 0.11 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.09 3.30 7.84 -2.91 -0.02 3.28 16 30 H 0.11 3.94 6.92 -2.91 -0.02 3.92 16 31 H 0.06 2.92 6.60 -2.39 -0.02 2.90 16 32 H 0.05 2.24 6.60 -2.38 -0.02 2.22 16 33 H -0.02 -1.02 6.96 -2.39 -0.02 -1.03 16 34 H 0.02 1.00 5.80 -2.38 -0.01 0.99 16 35 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.49 6.18 -2.38 -0.01 2.48 16 39 H 0.35 12.84 8.91 -92.71 -0.83 12.01 16 40 H 0.08 0.16 8.00 -2.39 -0.02 0.15 16 41 H 0.13 -0.38 7.79 -2.39 -0.02 -0.39 16 42 H 0.07 0.22 8.00 -2.38 -0.02 0.20 16 43 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.11 0.15 7.92 -2.39 -0.02 0.13 16 45 H 0.07 1.01 7.35 -2.39 -0.02 0.99 16 Total: -1.00 -75.08 365.79 1.03 -74.05 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.49 Total: 25.83 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 11.10 Total: 35.15 kcal Atomic # 7 Polarization: -171.04 SS G_CDS: -11.60 Total: -182.63 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -75.08 1.03 -74.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.322 kcal (2) G-P(sol) polarization free energy of solvation -75.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds