Wall clock time and date at job start Tue Mar 31 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99833 * 2 1 4 4 H 1.48507 * 109.46986 * 269.99740 * 3 2 1 5 5 H 1.48501 * 109.47421 * 29.99392 * 3 2 1 6 6 H 1.48497 * 109.47424 * 149.99487 * 3 2 1 7 7 C 1.38945 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 0.02562 * 7 2 1 9 9 N 1.37102 * 119.99865 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00037 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00023 * 179.97438 * 10 9 7 13 13 O 1.45193 * 109.46845 * 180.02562 * 12 10 9 14 14 C 1.34231 * 117.00126 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99644 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00640 * 179.71955 * 14 13 12 17 17 H 1.09001 * 110.96434 * 29.57961 * 16 14 13 18 18 C 1.54145 * 111.10090 * 153.70495 * 16 14 13 19 19 C 1.50936 * 110.47072 * 146.22747 * 18 16 14 20 20 C 1.39595 * 126.80806 * 159.86693 * 19 18 16 21 21 C 1.37698 * 121.05870 * 179.36482 * 20 19 18 22 22 C 1.38326 * 120.53907 * 359.97438 * 21 20 19 23 23 C 1.38023 * 119.29075 * 0.12778 * 22 21 20 24 24 C 1.38815 * 120.16460 * 359.97438 * 23 22 21 25 25 S 1.77438 * 130.57349 * 179.79401 * 24 23 22 26 26 H 0.97007 * 120.00325 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00225 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.46698 * 60.00246 * 12 10 9 29 29 H 1.08997 * 109.46779 * 300.00365 * 12 10 9 30 30 H 1.08999 * 109.27436 * 266.54231 * 18 16 14 31 31 H 1.08996 * 109.27734 * 25.97938 * 18 16 14 32 32 H 1.08007 * 119.47070 * 359.33983 * 20 19 18 33 33 H 1.07997 * 119.73035 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.35384 * 180.09905 * 22 21 20 35 35 H 1.08004 * 119.91696 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5455 1.4403 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7393 0.0005 14 6 7.3755 -3.9152 0.0009 15 8 8.1115 -2.9569 0.0023 16 6 7.9516 -5.3077 0.0067 17 1 7.2826 -6.0086 -0.4926 18 6 9.3549 -5.3303 -0.6306 19 6 10.2261 -6.3595 0.0476 20 6 11.3841 -6.9451 -0.4671 21 6 12.0987 -7.8677 0.2637 22 6 11.6825 -8.2357 1.5305 23 6 10.5389 -7.6697 2.0565 24 6 9.8174 -6.7411 1.3189 25 16 8.3303 -5.8574 1.7141 26 1 -0.4851 0.8401 -0.0004 27 1 3.8648 -0.3632 0.0014 28 1 5.9240 -1.8566 0.8911 29 1 5.9240 -1.8565 -0.8889 30 1 9.2655 -5.5745 -1.6891 31 1 9.8131 -4.3467 -0.5270 32 1 11.7247 -6.6703 -1.4545 33 1 12.9914 -8.3077 -0.1557 34 1 12.2462 -8.9585 2.1017 35 1 10.2045 -7.9500 3.0445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:46 Heat of formation + Delta-G solvation = -81.722958 kcal Electronic energy + Delta-G solvation = -21263.381273 eV Core-core repulsion = 17739.086029 eV Total energy + Delta-G solvation = -3524.295244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69534 -39.65234 -38.40665 -36.51896 -34.85079 -34.09196 -31.82881 -31.26274 -30.54466 -28.62640 -25.64255 -24.34510 -23.41513 -21.88155 -20.76218 -19.69088 -18.64922 -18.41177 -17.84393 -16.79466 -16.54759 -15.95904 -15.81441 -15.62552 -15.17358 -14.96925 -14.26595 -14.10273 -13.75208 -13.55493 -13.34804 -13.18912 -12.91762 -12.55551 -12.47151 -12.27975 -12.20032 -11.79090 -11.47205 -11.28514 -10.88956 -10.67387 -10.64438 -10.53456 -10.07082 -10.04183 -9.69882 -9.18622 -8.70685 -8.31492 -7.78568 -6.40833 -3.93972 0.63010 0.83145 0.92925 1.73869 2.25629 2.41216 2.97484 3.01975 3.10916 3.25015 3.52013 3.87045 4.01639 4.07400 4.34116 4.47940 4.59546 4.65091 4.80968 4.93927 5.05292 5.08607 5.14899 5.26007 5.28378 5.45071 5.48362 5.59268 5.63005 5.84941 5.92685 6.07257 6.29912 6.46328 7.40814 7.56924 7.98447 8.45381 8.81677 9.27636 9.62590 10.71312 Molecular weight = 307.07amu Principal moments of inertia in cm(-1) A = 0.042923 B = 0.002497 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.179982 B =11209.379188 C =11455.239182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.556 6.556 12 C 0.057 3.943 13 O -0.314 6.314 14 C 0.483 3.517 15 O -0.493 6.493 16 C -0.064 4.064 17 H 0.142 0.858 18 C -0.082 4.082 19 C -0.099 4.099 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.104 4.104 23 C -0.084 4.084 24 C -0.087 4.087 25 S -0.076 6.076 26 H 0.276 0.724 27 H 0.373 0.627 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.127 -11.892 -0.054 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.437 6.437 12 C -0.020 4.020 13 O -0.228 6.228 14 C 0.323 3.677 15 O -0.381 6.381 16 C -0.193 4.193 17 H 0.160 0.840 18 C -0.119 4.119 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.200 4.200 25 S 0.167 5.833 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 23.926 -11.902 1.050 26.744 hybrid contribution 1.241 1.328 -1.074 2.112 sum 25.168 -10.574 -0.024 27.299 Atomic orbital electron populations 1.69612 1.05653 1.27795 1.48222 1.25041 0.95533 0.98085 0.97236 0.86676 0.79875 0.83847 0.79093 1.19391 1.19913 1.19339 1.19425 0.78607 0.96906 1.48725 0.85971 1.42028 1.07661 1.05658 1.66470 1.19133 0.86782 0.85211 0.85720 1.90616 1.68942 1.30675 1.53503 1.22855 0.95424 0.79840 1.03888 1.86545 1.21996 1.31787 1.82493 1.22335 0.81665 0.90446 0.73298 1.90667 1.60640 1.41838 1.44972 1.23559 1.00742 0.96296 0.98704 0.83987 1.20935 0.89494 1.00638 1.00854 1.20730 0.97341 0.97895 0.94514 1.20803 0.93761 0.96470 1.00119 1.20993 1.00035 0.97960 0.94871 1.21125 0.95844 0.99598 0.95773 1.20435 0.95161 0.95294 0.99864 1.22185 0.99446 1.00969 0.97407 1.86591 1.25801 1.62655 1.08221 0.91353 0.79363 0.89099 0.89080 0.88043 0.86698 0.85639 0.85400 0.84962 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.96 55.50 0.77 -24.24 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 N -0.58 -13.63 5.09 -10.96 -0.06 -13.68 16 10 C 0.45 10.28 7.86 -10.98 -0.09 10.19 16 11 O -0.56 -15.23 16.08 -14.11 -0.23 -15.45 16 12 C 0.06 1.01 5.94 36.01 0.21 1.23 16 13 O -0.31 -5.57 9.75 -45.90 -0.45 -6.01 16 14 C 0.48 7.21 7.22 36.00 0.26 7.47 16 15 O -0.49 -7.88 15.45 -18.76 -0.29 -8.17 16 16 C -0.06 -0.76 3.94 -27.29 -0.11 -0.86 16 17 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 18 C -0.08 -0.80 5.82 -27.17 -0.16 -0.95 16 19 C -0.10 -0.97 5.98 -103.76 -0.62 -1.60 16 20 C -0.09 -0.72 9.97 -39.27 -0.39 -1.11 16 21 C -0.12 -0.80 10.00 -39.75 -0.40 -1.20 16 22 C -0.10 -0.73 10.08 -39.63 -0.40 -1.13 16 23 C -0.08 -0.74 10.05 -39.45 -0.40 -1.14 16 24 C -0.09 -0.94 6.48 -39.13 -0.25 -1.20 16 25 S -0.08 -0.95 22.54 -107.50 -2.42 -3.38 16 26 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 28 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 29 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.12 1.22 6.87 -51.93 -0.36 0.87 16 32 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -33.68 323.47 -8.62 -42.31 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.53 Total: 7.47 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.59 Total: 2.07 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.72 Total: -37.92 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.96 Total: -29.64 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.42 Total: -3.38 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.68 -8.62 -42.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.415 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds