Wall clock time and date at job start Tue Mar 31 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 O 1.45209 * 109.46951 * 179.97438 * 12 10 9 14 14 C 1.34223 * 116.99725 * 179.97438 * 13 12 10 15 15 O 1.20820 * 120.00620 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99666 * 179.97438 * 14 13 12 17 17 H 1.08994 * 110.96709 * 335.69581 * 16 14 13 18 18 C 1.54138 * 111.09849 * 211.56789 * 16 14 13 19 19 C 1.50934 * 110.47351 * 213.77890 * 18 16 14 20 20 C 1.39606 * 126.80914 * 200.16831 * 19 18 16 21 21 C 1.37700 * 121.05681 * 180.59719 * 20 19 18 22 22 C 1.38322 * 120.54092 * 359.97438 * 21 20 19 23 23 C 1.38027 * 119.29205 * 359.88930 * 22 21 20 24 24 C 1.38820 * 120.16525 * 0.02562 * 23 22 21 25 25 S 1.77430 * 130.57498 * 180.25046 * 24 23 22 26 26 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 29 29 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 30 30 H 1.09004 * 109.28379 * 334.02292 * 18 16 14 31 31 H 1.09001 * 109.28075 * 93.46138 * 18 16 14 32 32 H 1.07998 * 119.46976 * 0.62525 * 20 19 18 33 33 H 1.07995 * 119.72628 * 180.02562 * 21 20 19 34 34 H 1.07996 * 120.35465 * 179.89254 * 22 21 20 35 35 H 1.08000 * 119.91375 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 8 2.1873 -5.9666 0.0183 14 6 1.6741 -7.2069 0.0248 15 8 0.4764 -7.3652 0.0264 16 6 2.5922 -8.4021 0.0300 17 1 3.5651 -8.1484 -0.3908 18 6 1.9579 -9.5921 -0.7165 19 6 2.3687 -10.8961 -0.0769 20 6 2.3356 -12.1625 -0.6635 21 6 2.7292 -13.2805 0.0373 22 6 3.1687 -13.1722 1.3444 23 6 3.2115 -11.9285 1.9416 24 6 2.8164 -10.8011 1.2344 25 16 2.7647 -9.0948 1.7180 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6167 -4.9162 0.9030 29 1 0.6174 -4.9252 -0.8769 30 1 0.8722 -9.5012 -0.6823 31 1 2.2860 -9.5811 -1.7559 32 1 1.9963 -12.2668 -1.6835 33 1 2.6953 -14.2498 -0.4377 34 1 3.4750 -14.0512 1.8918 35 1 3.5533 -11.8322 2.9615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:48 Heat of formation + Delta-G solvation = -89.311075 kcal Electronic energy + Delta-G solvation = -21201.889955 eV Core-core repulsion = 17677.265665 eV Total energy + Delta-G solvation = -3524.624290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60058 -39.61457 -38.21437 -36.40485 -34.81484 -34.03182 -31.41895 -31.23614 -30.47851 -28.41364 -25.58123 -24.46869 -23.39678 -21.84772 -20.72537 -19.63902 -18.35585 -18.12759 -17.76661 -16.68450 -16.50443 -15.90781 -15.77497 -15.62171 -15.11853 -14.65431 -14.16911 -14.08014 -13.84067 -13.63472 -13.32730 -13.21014 -12.90001 -12.42777 -12.39695 -12.06152 -11.74684 -11.64155 -11.44210 -11.16888 -10.80587 -10.53587 -10.49108 -10.40327 -10.32035 -10.01733 -9.63972 -9.15970 -8.56406 -8.10796 -7.75030 -6.52114 -3.94199 0.66968 0.86661 0.95601 1.77460 2.32359 2.51743 3.10502 3.22962 3.27624 3.30450 3.70191 3.91970 4.04402 4.21970 4.49851 4.51070 4.62806 4.71932 4.96490 4.97569 5.08719 5.12433 5.17862 5.30131 5.44879 5.48042 5.62187 5.63109 5.87692 5.95140 6.00075 6.09741 6.42969 6.49070 7.46244 7.63124 7.92021 8.45555 9.04907 9.36455 9.86002 10.65110 Molecular weight = 307.07amu Principal moments of inertia in cm(-1) A = 0.048563 B = 0.002354 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.435040 B =11890.272674 C =12093.630509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.060 3.940 13 O -0.316 6.316 14 C 0.482 3.518 15 O -0.492 6.492 16 C -0.063 4.063 17 H 0.141 0.859 18 C -0.082 4.082 19 C -0.099 4.099 20 C -0.092 4.092 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.084 4.084 24 C -0.087 4.087 25 S -0.077 6.077 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -24.622 -0.322 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.459 6.459 12 C -0.017 4.017 13 O -0.230 6.230 14 C 0.321 3.679 15 O -0.380 6.380 16 C -0.193 4.193 17 H 0.159 0.841 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.111 4.111 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.199 4.199 25 S 0.166 5.834 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.720 -23.732 0.826 23.901 hybrid contribution -0.495 0.253 -1.126 1.256 sum 2.224 -23.479 -0.300 23.586 Atomic orbital electron populations 1.69622 1.06009 1.28429 1.49634 1.25326 0.95706 0.99913 0.96857 0.85732 0.79721 0.80683 0.77819 1.19061 1.20605 1.20595 1.19783 0.93520 0.81683 1.48107 0.87518 1.41708 1.09391 1.04065 1.63730 1.19265 0.88335 0.84001 0.86170 1.90573 1.13351 1.86720 1.55227 1.22859 0.90763 0.84296 1.03806 1.86538 1.40319 1.13697 1.82416 1.22317 0.87658 0.84487 0.73465 1.90670 1.15987 1.86512 1.44833 1.23552 1.03462 0.94084 0.98181 0.84098 1.20935 1.03674 0.87047 1.00247 1.20734 1.00566 0.95160 0.93985 1.20806 0.99602 0.90645 1.00089 1.20988 0.99644 0.98418 0.94840 1.21119 0.99240 0.96773 0.95226 1.20430 0.99888 0.90496 0.99981 1.22183 1.03914 0.96977 0.96864 1.86533 1.91853 0.97484 1.07481 0.91644 0.77130 0.89214 0.89214 0.86767 0.88030 0.85638 0.85413 0.84983 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C 0.44 10.51 7.86 -10.99 -0.09 10.43 16 11 O -0.57 -15.96 16.08 -14.11 -0.23 -16.19 16 12 C 0.06 1.14 5.94 36.00 0.21 1.35 16 13 O -0.32 -5.86 9.76 -45.88 -0.45 -6.30 16 14 C 0.48 7.56 7.17 36.01 0.26 7.82 16 15 O -0.49 -8.34 15.56 -18.75 -0.29 -8.63 16 16 C -0.06 -0.79 3.93 -27.29 -0.11 -0.89 16 17 H 0.14 1.54 8.14 -51.93 -0.42 1.11 16 18 C -0.08 -0.83 5.83 -27.17 -0.16 -0.99 16 19 C -0.10 -1.01 5.98 -103.76 -0.62 -1.63 16 20 C -0.09 -0.75 9.97 -39.27 -0.39 -1.14 16 21 C -0.12 -0.84 10.00 -39.75 -0.40 -1.23 16 22 C -0.10 -0.75 10.08 -39.63 -0.40 -1.15 16 23 C -0.08 -0.77 10.05 -39.44 -0.40 -1.16 16 24 C -0.09 -0.96 6.48 -39.13 -0.25 -1.22 16 25 S -0.08 -0.99 22.54 -107.50 -2.42 -3.42 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.40 9.40 7.90 -40.82 -0.32 9.07 16 28 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 29 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 30 H 0.11 1.28 6.94 -51.93 -0.36 0.92 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -32.62 326.72 -8.98 -41.60 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.57 Total: 7.30 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.58 Total: 2.28 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.67 Total: -37.17 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.97 Total: -31.13 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.42 Total: -3.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.62 -8.98 -41.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.715 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds