Wall clock time and date at job start Tue Mar 31 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47057 * 2 1 4 4 C 1.34943 * 126.04063 * 125.00069 * 3 2 1 5 5 C 1.35311 * 107.75111 * 179.97438 * 4 3 2 6 6 C 1.50698 * 126.04006 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47288 * 90.00384 * 6 5 4 8 8 O 1.21280 * 119.99577 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00229 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.64956 * 0.02562 * 9 7 6 11 11 C 1.54323 * 107.27592 * 181.02358 * 10 9 7 12 12 C 1.55155 * 102.94117 * 22.18747 * 11 10 9 13 13 H 1.09001 * 111.00345 * 82.57875 * 12 11 10 14 14 N 1.46496 * 111.00486 * 206.39091 * 12 11 10 15 15 C 1.46498 * 120.00346 * 58.54833 * 14 12 11 16 16 C 1.36937 * 119.99858 * 238.54764 * 14 12 11 17 17 H 1.08000 * 120.00449 * 23.29550 * 16 14 12 18 18 C 1.38817 * 120.00054 * 203.29875 * 16 14 12 19 19 N 1.31617 * 120.00053 * 13.95754 * 18 16 14 20 20 Si 1.86803 * 119.99801 * 193.96267 * 18 16 14 21 21 H 1.48499 * 109.46925 * 60.00128 * 20 18 16 22 22 H 1.48500 * 109.46994 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47139 * 299.99450 * 20 18 16 24 24 C 1.47429 * 125.64908 * 179.71141 * 9 7 6 25 25 C 1.39874 * 107.92058 * 0.02562 * 5 4 3 26 26 N 1.30837 * 108.19770 * 359.73862 * 25 5 4 27 27 H 1.09002 * 109.47720 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47080 * 300.00308 * 1 2 3 29 29 H 1.09005 * 109.47191 * 60.00182 * 1 2 3 30 30 H 1.09000 * 109.46407 * 239.99788 * 2 1 3 31 31 H 1.08996 * 109.46974 * 119.99899 * 2 1 3 32 32 H 1.07998 * 126.12306 * 359.96076 * 4 3 2 33 33 H 1.09005 * 109.46716 * 209.99500 * 6 5 4 34 34 H 1.08999 * 109.47389 * 329.99952 * 6 5 4 35 35 H 1.09007 * 109.87877 * 300.44052 * 10 9 7 36 36 H 1.08996 * 109.88548 * 61.44321 * 10 9 7 37 37 H 1.08993 * 110.72738 * 140.55559 * 11 10 9 38 38 H 1.09003 * 110.71403 * 263.65161 * 11 10 9 39 39 H 1.08999 * 109.47073 * 95.16936 * 15 14 12 40 40 H 1.08997 * 109.47216 * 215.16793 * 15 14 12 41 41 H 1.09002 * 109.46740 * 335.16503 * 15 14 12 42 42 H 0.96995 * 120.00121 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.36436 * 274.74789 * 24 9 7 44 44 H 1.08998 * 110.36077 * 37.07385 * 24 9 7 45 45 H 1.07996 * 125.90247 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9211 0.8938 5 6 3.0721 3.2134 0.5456 6 6 3.9560 4.1995 1.2650 7 6 5.3476 4.1397 0.6896 8 8 5.5971 3.3716 -0.2152 9 7 6.3147 4.9396 1.1805 10 6 6.1509 5.9121 2.2709 11 6 7.5123 6.6111 2.4699 12 6 8.2164 6.3957 1.1043 13 1 7.8942 7.1407 0.3768 14 7 9.6734 6.4104 1.2565 15 6 10.3264 5.4492 2.1486 16 6 10.4249 7.3226 0.5650 17 1 9.9752 8.2417 0.2193 18 6 11.7647 7.0661 0.3082 19 7 12.2467 5.8530 0.4770 20 14 12.8838 8.4426 -0.2769 21 1 12.9142 9.5226 0.7419 22 1 14.2567 7.9131 -0.4772 23 1 12.3704 8.9865 -1.5598 24 6 7.7138 4.9799 0.7174 25 6 2.3125 3.4724 -0.6000 26 7 1.6846 2.3734 -0.9310 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3183 1.4129 1.7363 33 1 3.5544 5.2052 1.1408 34 1 3.9903 3.9503 2.3256 35 1 5.3927 6.6473 2.0011 36 1 5.8586 5.3972 3.1861 37 1 7.3748 7.6737 2.6696 38 1 8.0743 6.1384 3.2755 39 1 10.6587 4.5860 1.5719 40 1 11.1861 5.9210 2.6244 41 1 9.6203 5.1254 2.9133 42 1 13.1828 5.6736 0.2972 43 1 8.3027 4.2145 1.2226 44 1 7.7596 4.8437 -0.3631 45 1 2.2572 4.4155 -1.1233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972705018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:38 Heat of formation + Delta-G solvation = 72.313218 kcal Electronic energy + Delta-G solvation = -24854.806720 eV Core-core repulsion = 21296.115717 eV Total energy + Delta-G solvation = -3558.691003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31003 -39.53641 -37.32757 -34.81004 -34.71988 -32.18884 -31.41837 -30.30777 -29.69668 -28.18331 -26.60755 -26.02811 -24.03396 -23.33011 -22.27798 -20.86081 -20.45522 -19.28073 -18.78588 -17.05358 -17.01813 -16.79262 -15.87266 -15.60048 -14.86153 -14.84219 -14.53814 -14.23976 -14.05816 -13.40108 -13.33461 -13.12622 -13.08210 -12.60524 -12.58730 -12.42924 -12.39746 -12.22158 -11.95056 -11.70184 -11.63673 -11.44417 -10.89097 -10.78056 -10.59398 -10.50319 -10.45709 -10.27717 -9.88566 -9.82504 -9.53465 -9.45467 -8.58557 -8.40773 -8.22497 -6.79363 -5.75918 -3.23682 1.84416 2.39694 2.70502 2.97553 3.38086 3.42290 3.44001 3.48592 4.24110 4.47075 4.61746 4.70248 4.84773 4.86390 4.93684 5.04477 5.08717 5.15781 5.28943 5.37140 5.38168 5.39106 5.51466 5.59340 5.66194 5.68581 5.81470 5.86025 5.93281 6.04874 6.05012 6.34376 6.42465 6.58476 6.60820 6.68482 6.79296 6.90783 6.93904 7.31993 7.65084 7.69889 7.77883 7.92795 8.35629 8.54244 9.18899 9.81540 10.30559 11.28426 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.033209 B = 0.002466 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.950338 B =11349.952164 C =11523.574498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.067 3.933 5 C -0.217 4.217 6 C -0.055 4.055 7 C 0.521 3.479 8 O -0.539 6.539 9 N -0.618 5.618 10 C 0.105 3.895 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.585 5.585 15 C 0.159 3.841 16 C -0.262 4.262 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.904 5.904 20 Si 0.907 3.093 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.088 3.912 25 C 0.063 3.937 26 N -0.298 5.298 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.170 0.830 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.003 0.997 42 H 0.254 0.746 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 -7.037 6.037 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.079 4.079 5 C -0.229 4.229 6 C -0.096 4.096 7 C 0.309 3.691 8 O -0.416 6.416 9 N -0.353 5.353 10 C -0.019 4.019 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.305 5.305 15 C 0.014 3.986 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.737 3.263 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.036 4.036 25 C -0.123 4.123 26 N -0.119 5.119 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.187 0.813 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.102 -8.290 4.664 24.062 hybrid contribution 1.398 0.974 0.327 1.734 sum -20.704 -7.317 4.991 22.519 Atomic orbital electron populations 1.22052 0.93897 1.02703 1.03529 1.21647 0.95893 0.77711 1.03752 1.48551 1.35986 1.10100 1.21048 1.22222 0.94988 0.94282 0.96419 1.19445 1.06907 0.94965 1.01547 1.19868 0.90709 0.99345 0.99674 1.20357 0.85920 0.79832 0.82958 1.90702 1.82470 1.38568 1.29867 1.48596 1.11108 1.38946 1.36610 1.22007 0.99130 0.91209 0.89541 1.23206 0.94259 1.00296 1.01665 1.21507 0.85383 0.93366 0.93530 0.90417 1.43849 0.99179 1.38526 1.48940 1.20806 0.93748 0.93276 0.90733 1.19164 0.92132 0.96764 1.31056 0.91264 1.25069 0.98484 0.96162 0.99726 1.70059 1.14080 1.18141 1.52463 0.86304 0.79882 0.81430 0.78711 1.21008 1.21640 1.20844 1.23084 0.79509 1.00776 1.00272 1.23706 0.95601 0.97433 0.95601 1.77266 1.24668 0.96774 1.13190 0.90832 0.92155 0.91101 0.89868 0.88775 0.81321 0.88396 0.88796 0.91877 0.92189 0.90666 0.90601 0.94904 0.93991 0.97903 0.93565 0.91638 0.91097 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.10 37.16 0.38 -0.68 16 2 C 0.13 0.98 7.23 -4.04 -0.03 0.96 16 3 N -0.37 -4.30 3.68 -61.37 -0.23 -4.52 16 4 C 0.07 0.76 11.36 -17.23 -0.20 0.56 16 5 C -0.22 -2.68 4.59 -105.05 -0.48 -3.16 16 6 C -0.05 -0.61 5.38 -29.03 -0.16 -0.76 16 7 C 0.52 8.29 7.84 -10.99 -0.09 8.21 16 8 O -0.54 -11.03 16.29 5.56 0.09 -10.94 16 9 N -0.62 -9.80 3.32 -170.38 -0.57 -10.37 16 10 C 0.10 1.31 6.48 -3.07 -0.02 1.29 16 11 C -0.15 -2.35 6.48 -24.90 -0.16 -2.51 16 12 C 0.17 3.40 3.55 -65.66 -0.23 3.17 16 13 H 0.08 1.56 7.95 -51.93 -0.41 1.14 16 14 N -0.58 -14.17 2.96 -170.90 -0.51 -14.67 16 15 C 0.16 3.78 7.60 59.85 0.45 4.24 16 16 C -0.26 -7.02 9.60 -15.06 -0.14 -7.17 16 17 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 18 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 19 N -0.90 -26.10 10.78 55.49 0.60 -25.51 16 20 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.09 1.71 6.47 -2.40 -0.02 1.70 16 25 C 0.06 0.81 11.96 -17.36 -0.21 0.60 16 26 N -0.30 -4.07 12.42 30.62 0.38 -3.68 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.46 8.07 -51.93 -0.42 0.05 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.21 6.38 -51.93 -0.33 0.88 16 39 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 40 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 41 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.37 7.06 -51.93 -0.37 1.00 16 44 H 0.07 1.54 8.03 -51.93 -0.42 1.13 16 45 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -34.39 368.20 -7.94 -42.32 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.24 Total: -1.22 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.99 Total: 6.48 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.32 Total: -58.75 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.39 -7.94 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972705018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.638 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds