Wall clock time and date at job start Tue Mar 31 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46635 * 2 1 4 4 C 1.34946 * 126.03887 * 125.00648 * 3 2 1 5 5 C 1.35315 * 107.75120 * 179.76784 * 4 3 2 6 6 C 1.50697 * 126.04004 * 180.24520 * 5 4 3 7 7 C 1.50700 * 109.47412 * 89.99951 * 6 5 4 8 8 O 1.21284 * 119.99779 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00453 * 179.97438 * 7 6 5 10 10 C 1.47026 * 125.64352 * 359.69291 * 9 7 6 11 11 C 1.54331 * 107.26212 * 178.84835 * 10 9 7 12 12 C 1.55156 * 103.02381 * 338.13905 * 11 10 9 13 13 H 1.09004 * 111.00717 * 277.23791 * 12 11 10 14 14 N 1.46494 * 111.04166 * 153.39554 * 12 11 10 15 15 C 1.46504 * 120.00201 * 307.78918 * 14 12 11 16 16 C 1.36941 * 120.00265 * 127.78549 * 14 12 11 17 17 H 1.08002 * 119.99769 * 23.26680 * 16 14 12 18 18 C 1.38815 * 119.99888 * 203.26231 * 16 14 12 19 19 N 1.31618 * 120.00288 * 13.82242 * 18 16 14 20 20 Si 1.86801 * 119.99743 * 193.81756 * 18 16 14 21 21 H 1.48500 * 109.47134 * 90.00268 * 20 18 16 22 22 H 1.48501 * 109.47045 * 210.00445 * 20 18 16 23 23 H 1.48501 * 109.47277 * 330.00101 * 20 18 16 24 24 C 1.47422 * 125.65122 * 179.97438 * 9 7 6 25 25 C 1.39871 * 107.91661 * 0.22297 * 5 4 3 26 26 N 1.30837 * 108.20451 * 359.97438 * 25 5 4 27 27 H 1.09009 * 109.46556 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47478 * 299.99781 * 1 2 3 29 29 H 1.08997 * 109.47417 * 60.00591 * 1 2 3 30 30 H 1.08996 * 109.47087 * 239.99859 * 2 1 3 31 31 H 1.08998 * 109.47035 * 119.99786 * 2 1 3 32 32 H 1.08002 * 126.12593 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.46972 * 209.99707 * 6 5 4 34 34 H 1.08993 * 109.47623 * 329.99707 * 6 5 4 35 35 H 1.08994 * 109.88382 * 298.39473 * 10 9 7 36 36 H 1.08997 * 109.87934 * 59.56011 * 10 9 7 37 37 H 1.09000 * 110.84773 * 219.67393 * 11 10 9 38 38 H 1.08993 * 110.51753 * 96.45435 * 11 10 9 39 39 H 1.09003 * 109.47224 * 95.15324 * 15 14 12 40 40 H 1.08997 * 109.47502 * 215.15974 * 15 14 12 41 41 H 1.09002 * 109.46770 * 335.15977 * 15 14 12 42 42 H 0.96999 * 120.00024 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.36530 * 322.92965 * 24 9 7 44 44 H 1.08996 * 110.36543 * 85.25054 * 24 9 7 45 45 H 1.08005 * 125.89845 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8730 1.9211 0.8938 5 6 3.0756 3.2122 0.5430 6 6 3.9644 4.1965 1.2587 7 6 5.3544 4.1311 0.6803 8 8 5.5994 3.3606 -0.2238 9 7 6.3254 4.9287 1.1677 10 6 6.1655 5.9084 2.2522 11 6 7.5440 6.5617 2.4861 12 6 8.5300 5.5172 1.8994 13 1 8.7398 4.7287 2.6222 14 7 9.7689 6.1574 1.4506 15 6 9.7129 7.3034 0.5396 16 6 10.9794 5.6848 1.8827 17 1 11.0698 4.6642 2.2242 18 6 12.0901 6.5174 1.8816 19 7 11.9388 7.8162 1.7309 20 14 13.7994 5.7946 2.0941 21 1 14.3622 5.4548 0.7626 22 1 14.6771 6.7879 2.7637 23 1 13.7178 4.5666 2.9251 24 6 7.7221 4.9674 0.6977 25 6 2.3146 3.4716 -0.6016 26 7 1.6785 2.3755 -0.9266 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.3192 1.4126 1.7357 33 1 3.5659 5.2034 1.1338 34 1 4.0003 3.9490 2.3196 35 1 5.4381 6.6666 1.9626 36 1 5.8370 5.4047 3.1613 37 1 7.7275 6.7099 3.5503 38 1 7.6160 7.5057 1.9461 39 1 9.7532 8.2279 1.1157 40 1 10.5599 7.2648 -0.1453 41 1 8.7838 7.2701 -0.0293 42 1 12.7149 8.3980 1.7305 43 1 8.0630 3.9651 0.4382 44 1 7.8157 5.6345 -0.1592 45 1 2.2619 4.4138 -1.1269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972705019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:40 Heat of formation + Delta-G solvation = 71.837628 kcal Electronic energy + Delta-G solvation = -24825.910577 eV Core-core repulsion = 21267.198951 eV Total energy + Delta-G solvation = -3558.711626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33137 -39.57071 -37.35080 -34.82630 -34.73570 -32.21053 -31.42037 -30.32584 -29.71156 -28.21340 -26.62974 -26.02486 -24.05566 -23.35548 -22.26026 -20.88098 -20.47314 -19.28851 -18.81448 -17.12003 -16.98282 -16.82478 -15.86877 -15.61589 -15.03830 -14.74144 -14.49503 -14.27508 -14.04541 -13.42461 -13.38687 -13.16746 -13.08274 -12.73232 -12.52596 -12.44664 -12.39481 -12.26425 -11.96269 -11.70804 -11.66276 -11.30024 -10.94033 -10.80231 -10.61061 -10.49421 -10.47317 -10.23590 -9.89744 -9.85010 -9.56873 -9.47538 -8.60147 -8.42618 -8.26414 -6.80434 -5.76897 -3.24435 1.82384 2.37827 2.68059 2.93661 3.37240 3.41171 3.44359 3.46593 4.22404 4.46517 4.60202 4.68748 4.82998 4.84459 4.91598 5.05615 5.07201 5.14627 5.30641 5.33112 5.37139 5.41416 5.53075 5.58475 5.64163 5.66564 5.79835 5.81908 5.94070 6.03069 6.05310 6.33922 6.41999 6.56379 6.59961 6.68784 6.77697 6.89706 6.91940 7.33421 7.62949 7.68744 7.77752 7.88924 8.34725 8.50102 9.18337 9.80884 10.29631 11.27526 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.033117 B = 0.002459 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.275073 B =11382.923911 C =11754.150588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.067 3.933 5 C -0.217 4.217 6 C -0.055 4.055 7 C 0.522 3.478 8 O -0.541 6.541 9 N -0.616 5.616 10 C 0.103 3.897 11 C -0.151 4.151 12 C 0.173 3.827 13 H 0.077 0.923 14 N -0.586 5.586 15 C 0.159 3.841 16 C -0.260 4.260 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.086 3.914 25 C 0.063 3.937 26 N -0.298 5.298 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.170 0.830 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.628 -9.214 1.751 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.079 4.079 5 C -0.229 4.229 6 C -0.096 4.096 7 C 0.311 3.689 8 O -0.418 6.418 9 N -0.351 5.351 10 C -0.021 4.021 11 C -0.191 4.191 12 C 0.063 3.937 13 H 0.095 0.905 14 N -0.306 5.306 15 C 0.014 3.986 16 C -0.389 4.389 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.039 4.039 25 C -0.124 4.124 26 N -0.119 5.119 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.187 0.813 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.253 -10.246 0.399 24.502 hybrid contribution 1.639 0.212 0.737 1.809 sum -20.614 -10.034 1.136 22.955 Atomic orbital electron populations 1.22052 0.93891 1.02716 1.03540 1.21651 0.95909 0.77690 1.03754 1.48554 1.35872 1.09997 1.21248 1.22234 0.95024 0.94275 0.96343 1.19442 1.06919 0.95056 1.01460 1.19862 0.90594 0.99363 0.99784 1.20352 0.85915 0.79761 0.82919 1.90695 1.82506 1.38628 1.29963 1.48549 1.10959 1.38804 1.36801 1.22052 0.99263 0.91113 0.89637 1.23206 0.93066 1.00611 1.02259 1.21407 0.86122 0.93799 0.92415 0.90480 1.43815 1.00219 1.34988 1.51562 1.20810 0.95726 0.90110 0.91911 1.19221 0.85456 0.94755 1.39485 0.91272 1.25031 0.98684 0.95028 1.00695 1.70066 1.28800 1.01863 1.54137 0.86229 0.84263 0.78080 0.77791 1.21428 1.21747 1.20441 1.22972 0.79551 1.01760 0.99606 1.23701 0.95509 0.97486 0.95674 1.77266 1.24421 0.96752 1.13473 0.90826 0.92137 0.91105 0.89866 0.88760 0.81280 0.88408 0.88682 0.92040 0.91905 0.90531 0.90567 0.94768 0.94041 0.97946 0.93668 0.91198 0.91631 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 10.10 37.16 0.38 -0.65 16 2 C 0.13 0.96 7.23 -4.04 -0.03 0.93 16 3 N -0.37 -4.20 3.68 -61.37 -0.23 -4.43 16 4 C 0.07 0.74 11.36 -17.22 -0.20 0.55 16 5 C -0.22 -2.62 4.59 -105.05 -0.48 -3.10 16 6 C -0.05 -0.60 5.38 -29.04 -0.16 -0.75 16 7 C 0.52 8.07 7.84 -10.99 -0.09 7.99 16 8 O -0.54 -10.68 16.29 5.55 0.09 -10.59 16 9 N -0.62 -9.56 3.33 -170.53 -0.57 -10.12 16 10 C 0.10 1.31 6.49 -3.06 -0.02 1.29 16 11 C -0.15 -2.44 6.50 -24.89 -0.16 -2.60 16 12 C 0.17 3.40 3.53 -65.80 -0.23 3.16 16 13 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 14 N -0.59 -14.18 2.96 -171.04 -0.51 -14.68 16 15 C 0.16 3.79 7.57 59.85 0.45 4.24 16 16 C -0.26 -6.97 9.60 -15.06 -0.14 -7.11 16 17 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 18 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 19 N -0.90 -25.77 10.77 55.49 0.60 -25.18 16 20 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.09 1.59 6.47 -2.54 -0.02 1.57 16 25 C 0.06 0.79 11.96 -17.36 -0.21 0.58 16 26 N -0.30 -3.98 12.42 30.63 0.38 -3.60 16 27 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 39 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 40 H 0.04 1.07 7.38 -51.93 -0.38 0.69 16 41 H 0.00 0.04 6.38 -51.93 -0.33 -0.29 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 44 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 45 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -33.97 368.18 -7.94 -41.91 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.24 Total: -1.54 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.99 Total: 6.12 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.32 Total: -58.01 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.97 -7.94 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972705019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.747 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds