Wall clock time and date at job start Tue Mar 31 2020 03:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.50704 * 109.47247 * 119.99791 * 2 1 3 5 5 O 1.21281 * 119.99778 * 119.99506 * 4 2 1 6 6 N 1.34772 * 119.99993 * 299.72821 * 4 2 1 7 7 C 1.46500 * 120.00035 * 180.27436 * 6 4 2 8 8 H 1.08998 * 110.88487 * 37.41872 * 7 6 4 9 9 C 1.54913 * 111.00299 * 273.54481 * 7 6 4 10 10 N 1.47424 * 104.83352 * 278.93622 * 9 7 6 11 11 C 1.36932 * 125.65015 * 155.91001 * 10 9 7 12 12 H 1.07995 * 120.00326 * 342.01651 * 11 10 9 13 13 C 1.38816 * 119.99866 * 162.02942 * 11 10 9 14 14 N 1.31622 * 119.99774 * 156.30716 * 13 11 10 15 15 Si 1.86794 * 120.00039 * 336.30421 * 13 11 10 16 16 H 1.48495 * 109.47452 * 84.68258 * 15 13 11 17 17 H 1.48503 * 109.47599 * 204.68328 * 15 13 11 18 18 H 1.48503 * 109.47288 * 324.67862 * 15 13 11 19 19 C 1.47021 * 108.69809 * 335.86766 * 10 9 7 20 20 C 1.54323 * 107.27583 * 1.06187 * 19 10 9 21 21 C 1.52995 * 110.72069 * 263.82618 * 20 19 10 22 22 C 1.53003 * 110.72184 * 140.55111 * 20 19 10 23 23 N 1.46500 * 109.47385 * 240.00193 * 2 1 3 24 24 C 1.34952 * 126.03242 * 324.71982 * 23 2 1 25 25 C 1.35310 * 107.74405 * 179.83960 * 24 23 2 26 26 C 1.39871 * 107.91983 * 0.41979 * 25 24 23 27 27 N 1.30836 * 108.20257 * 359.73734 * 26 25 24 28 28 H 1.09002 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47274 * 299.99975 * 1 2 3 30 30 H 1.09006 * 109.47080 * 59.99753 * 1 2 3 31 31 H 0.96998 * 120.00468 * 0.27218 * 6 4 2 32 32 H 1.09004 * 110.36767 * 37.77001 * 9 7 6 33 33 H 1.09000 * 110.36841 * 159.98105 * 9 7 6 34 34 H 0.97002 * 119.99522 * 179.97438 * 14 13 11 35 35 H 1.09007 * 109.87997 * 120.48015 * 19 10 9 36 36 H 1.09004 * 109.88624 * 241.63988 * 19 10 9 37 37 H 1.09004 * 109.47218 * 173.51480 * 21 20 19 38 38 H 1.08991 * 109.47397 * 293.52501 * 21 20 19 39 39 H 1.09004 * 109.46826 * 53.52480 * 21 20 19 40 40 H 1.08996 * 109.47107 * 306.48213 * 22 20 19 41 41 H 1.09002 * 109.46597 * 66.47925 * 22 20 19 42 42 H 1.08992 * 109.47155 * 186.47908 * 22 20 19 43 43 H 1.08004 * 126.12789 * 359.97438 * 24 23 2 44 44 H 1.08001 * 126.04316 * 180.15429 * 25 24 23 45 45 H 1.08008 * 125.89758 * 179.75797 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7113 -0.2467 2.4546 7 6 2.2046 -0.9338 3.6507 8 1 3.2202 -1.2988 3.4981 9 6 1.2554 -2.0878 4.0593 10 7 0.1615 -1.4327 4.7993 11 6 -1.1057 -1.9279 4.9544 12 1 -1.4660 -2.7052 4.2969 13 6 -1.9273 -1.4306 5.9567 14 7 -3.2351 -1.5286 5.8447 15 14 -1.1770 -0.6223 7.4644 16 1 -0.8968 0.8064 7.1723 17 1 -2.1269 -0.7180 8.6018 18 1 0.0893 -1.3129 7.8177 19 6 0.6569 -0.1601 5.3440 20 6 2.1257 -0.0102 4.8950 21 6 3.0786 -0.4942 5.9898 22 6 2.4297 1.4398 4.5129 23 7 2.0184 -0.6906 -1.1962 24 6 1.4431 -1.7591 -1.7864 25 6 2.1962 -2.0924 -2.8600 26 6 3.2737 -1.2028 -2.9226 27 7 3.1681 -0.3620 -1.9258 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.1536 0.5419 2.5436 32 1 0.8665 -2.5907 3.1739 33 1 1.7767 -2.7989 4.7002 34 1 -3.8092 -1.1814 6.5453 35 1 0.0635 0.6665 4.9530 36 1 0.6018 -0.1763 6.4326 37 1 4.1006 -0.4880 5.6108 38 1 3.0068 0.1677 6.8526 39 1 2.8071 -1.5076 6.2857 40 1 1.7039 1.7808 3.7747 41 1 2.3687 2.0697 5.4004 42 1 3.4330 1.5018 4.0915 43 1 0.5417 -2.2576 -1.4615 44 1 2.0022 -2.9046 -3.5449 45 1 4.0575 -1.2087 -3.6658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972827921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:58 Heat of formation + Delta-G solvation = 80.817869 kcal Electronic energy + Delta-G solvation = -26441.992771 eV Core-core repulsion = 22883.670557 eV Total energy + Delta-G solvation = -3558.322214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31285 -40.04949 -38.33773 -34.65054 -34.06674 -33.17399 -31.47208 -30.10998 -29.60737 -28.44690 -27.07169 -26.01018 -25.02663 -23.56247 -21.61017 -21.05017 -20.51548 -19.75613 -19.14752 -17.70812 -17.15795 -16.91413 -15.94497 -15.31029 -15.26412 -14.75598 -14.42570 -14.15059 -13.76150 -13.73724 -13.55122 -13.34185 -13.16905 -12.81696 -12.76527 -12.55418 -12.43520 -12.33139 -12.11726 -11.81420 -11.66284 -11.56044 -11.27291 -10.92841 -10.82649 -10.70018 -10.53897 -10.32667 -10.01600 -9.85736 -9.41640 -9.31556 -8.97190 -8.61292 -8.56270 -7.11793 -6.01436 -3.30043 1.85438 2.32794 2.59804 2.89516 3.27460 3.28262 3.42686 3.45543 4.33392 4.48328 4.55971 4.63858 4.66866 4.83451 4.85971 4.96508 5.03712 5.08042 5.31146 5.36217 5.40017 5.47071 5.54760 5.58276 5.72359 5.73441 5.81002 5.87109 5.89458 5.99041 6.02816 6.09006 6.15818 6.30623 6.30902 6.46259 6.53854 6.63904 6.66323 6.78251 6.95459 7.54114 7.65311 7.71336 8.23232 8.24489 8.77159 9.62704 10.10721 11.14949 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.004199 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.588134 B = 6666.713637 C = 7411.914985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.125 0.875 4 C 0.503 3.497 5 O -0.527 6.527 6 N -0.700 5.700 7 C 0.141 3.859 8 H 0.094 0.906 9 C 0.126 3.874 10 N -0.606 5.606 11 C -0.241 4.241 12 H 0.092 0.908 13 C 0.023 3.977 14 N -0.906 5.906 15 Si 0.885 3.115 16 H -0.287 1.287 17 H -0.305 1.305 18 H -0.279 1.279 19 C 0.127 3.873 20 C -0.087 4.087 21 C -0.133 4.133 22 C -0.133 4.133 23 N -0.352 5.352 24 C 0.073 3.927 25 C -0.279 4.279 26 C 0.044 3.956 27 N -0.295 5.295 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.402 0.598 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.040 0.960 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.171 0.829 44 H 0.146 0.854 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.574 5.815 -11.474 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.143 0.857 4 C 0.286 3.714 5 O -0.402 6.402 6 N -0.352 5.352 7 C 0.036 3.964 8 H 0.112 0.888 9 C -0.001 4.001 10 N -0.332 5.332 11 C -0.368 4.368 12 H 0.109 0.891 13 C -0.176 4.176 14 N -0.550 5.550 15 Si 0.717 3.283 16 H -0.214 1.214 17 H -0.233 1.233 18 H -0.206 1.206 19 C 0.003 3.997 20 C -0.088 4.088 21 C -0.190 4.190 22 C -0.191 4.191 23 N -0.134 5.134 24 C -0.073 4.073 25 C -0.308 4.308 26 C -0.142 4.142 27 N -0.116 5.116 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.238 0.762 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.188 0.812 44 H 0.164 0.836 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.282 6.155 -10.763 16.763 hybrid contribution -0.395 -0.018 0.775 0.870 sum 10.886 6.137 -9.989 15.998 Atomic orbital electron populations 1.22173 0.90106 1.04890 1.04791 1.21112 0.96392 0.97439 0.81342 0.85732 1.20583 0.80984 0.85206 0.84638 1.90748 1.37374 1.25664 1.86427 1.45801 1.52780 1.31858 1.04715 1.22187 0.98121 0.93286 0.82820 0.88796 1.21983 0.89220 0.93175 0.95675 1.44754 1.08789 1.17456 1.62247 1.18625 0.85186 1.20512 1.12432 0.89074 1.24938 0.94974 0.99349 0.98291 1.69853 1.02213 1.48973 1.33936 0.86940 0.77815 0.78972 0.84533 1.21441 1.23314 1.20556 1.21793 0.90730 0.90147 0.97073 1.21867 0.96944 0.95139 0.94818 1.21734 0.97874 1.02070 0.97346 1.21737 1.01182 0.94821 1.01358 1.48194 1.19546 1.24287 1.21344 1.22464 0.99880 0.90427 0.94545 1.21436 0.99515 1.06444 1.03416 1.23822 0.99082 0.94202 0.97094 1.77307 1.02146 1.24685 1.07434 0.90539 0.88828 0.90307 0.76211 0.93022 0.94811 0.92711 0.94242 0.95270 0.92573 0.92286 0.91766 0.92660 0.92201 0.92392 0.81229 0.83642 0.80218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.74 37.16 0.32 -1.26 16 2 C 0.14 1.71 3.73 -69.08 -0.26 1.46 16 3 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.50 7.50 7.22 -10.99 -0.08 7.42 16 5 O -0.53 -9.98 16.16 5.56 0.09 -9.89 16 6 N -0.70 -9.87 4.59 -51.73 -0.24 -10.10 16 7 C 0.14 2.25 2.56 -65.78 -0.17 2.08 16 8 H 0.09 1.50 7.63 -51.93 -0.40 1.11 16 9 C 0.13 2.47 6.61 -2.53 -0.02 2.45 16 10 N -0.61 -13.78 3.21 -170.07 -0.55 -14.32 16 11 C -0.24 -6.56 10.56 -15.06 -0.16 -6.72 16 12 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 13 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 14 N -0.91 -27.14 13.97 55.49 0.78 -26.37 16 15 Si 0.89 22.09 24.39 -169.99 -4.15 17.94 16 16 H -0.29 -6.84 6.84 56.52 0.39 -6.45 16 17 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 18 H -0.28 -6.88 6.87 56.52 0.39 -6.50 16 19 C 0.13 2.55 4.32 -3.06 -0.01 2.54 16 20 C -0.09 -1.32 0.81 -152.68 -0.12 -1.45 16 21 C -0.13 -1.88 8.41 37.15 0.31 -1.56 16 22 C -0.13 -1.62 8.07 37.16 0.30 -1.32 16 23 N -0.35 -4.82 3.02 -55.99 -0.17 -4.99 16 24 C 0.07 0.91 10.57 -17.22 -0.18 0.73 16 25 C -0.28 -3.26 10.80 -40.01 -0.43 -3.69 16 26 C 0.04 0.54 12.03 -17.36 -0.21 0.33 16 27 N -0.30 -4.33 12.58 30.63 0.39 -3.94 16 28 H 0.08 0.82 7.16 -51.93 -0.37 0.45 16 29 H 0.09 0.87 7.58 -51.92 -0.39 0.48 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 4.97 6.31 -40.82 -0.26 4.71 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.03 0.67 7.81 -51.93 -0.41 0.26 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.04 0.81 7.77 -51.93 -0.40 0.41 16 36 H 0.03 0.65 3.23 -51.93 -0.17 0.49 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.01 7.58 -51.93 -0.39 0.61 16 40 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.17 1.77 7.27 -52.48 -0.38 1.39 16 44 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.18 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -34.43 356.74 -6.16 -40.60 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.89 Total: 4.12 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.80 Total: 1.58 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.21 Total: -59.73 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.15 Total: 17.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.43 -6.16 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972827921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.413 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds