Wall clock time and date at job start Tue Mar 31 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47099 * 2 1 4 4 C 1.35033 * 124.88334 * 125.00028 * 3 2 1 5 5 C 1.35363 * 107.22924 * 179.97438 * 4 3 2 6 6 C 1.41507 * 105.50175 * 0.02562 * 5 4 3 7 7 C 1.47713 * 126.51764 * 180.02562 * 6 5 4 8 8 O 1.21568 * 120.00042 * 353.54673 * 7 6 5 9 9 N 1.34777 * 119.99650 * 173.53863 * 7 6 5 10 10 C 1.46925 * 120.63339 * 4.98346 * 9 7 6 11 11 C 1.53192 * 108.77467 * 233.58043 * 10 9 7 12 12 C 1.53037 * 109.31488 * 305.36654 * 11 10 9 13 13 C 1.53036 * 109.53949 * 61.36332 * 12 11 10 14 14 H 1.09002 * 109.49743 * 58.62020 * 13 12 11 15 15 N 1.46500 * 109.50147 * 178.68579 * 13 12 11 16 16 C 1.46499 * 119.99989 * 59.99795 * 15 13 12 17 17 C 1.36936 * 120.00075 * 240.00491 * 15 13 12 18 18 H 1.08007 * 119.99903 * 24.83764 * 17 15 13 19 19 C 1.38813 * 119.99934 * 204.83964 * 17 15 13 20 20 N 1.31614 * 120.00112 * 5.88608 * 19 17 15 21 21 Si 1.86799 * 120.00029 * 185.88428 * 19 17 15 22 22 H 1.48502 * 109.47175 * 89.99779 * 21 19 17 23 23 H 1.48494 * 109.47486 * 210.00331 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00386 * 21 19 17 25 25 C 1.46923 * 120.62741 * 184.69934 * 9 7 6 26 26 N 1.28470 * 124.88411 * 304.69060 * 3 2 1 27 27 H 1.08997 * 109.46698 * 300.00142 * 1 2 3 28 28 H 1.09001 * 109.46695 * 60.00069 * 1 2 3 29 29 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46960 * 239.99375 * 2 1 3 31 31 H 1.09001 * 109.46695 * 119.99931 * 2 1 3 32 32 H 1.07995 * 126.38891 * 359.97438 * 4 3 2 33 33 H 1.08004 * 127.25098 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.58691 * 353.36990 * 10 9 7 35 35 H 1.09002 * 109.58619 * 113.79328 * 10 9 7 36 36 H 1.09000 * 109.49665 * 65.31970 * 11 10 9 37 37 H 1.08998 * 109.49533 * 185.37766 * 11 10 9 38 38 H 1.08996 * 109.46117 * 181.38378 * 12 11 10 39 39 H 1.08998 * 109.45634 * 301.34364 * 12 11 10 40 40 H 1.09000 * 109.46924 * 95.04756 * 16 15 13 41 41 H 1.09003 * 109.47334 * 215.04846 * 16 15 13 42 42 H 1.08997 * 109.46924 * 335.04868 * 16 15 13 43 43 H 0.96996 * 120.00387 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58969 * 246.21042 * 25 9 7 45 45 H 1.09000 * 109.58723 * 6.63112 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0832 3.1920 0.5708 6 6 2.3006 3.4123 -0.5874 7 6 2.1867 4.6758 -1.3440 8 8 2.7086 5.6881 -0.9188 9 7 1.5042 4.7063 -2.5058 10 6 0.7771 3.5202 -2.9783 11 6 1.2324 3.1988 -4.4052 12 6 1.0529 4.4379 -5.2851 13 6 1.9202 5.5781 -4.7466 14 1 2.9645 5.2659 -4.7339 15 7 1.7718 6.7540 -5.6076 16 6 0.4539 7.3677 -5.7887 17 6 2.8649 7.2796 -6.2432 18 1 3.7198 6.6540 -6.4537 19 6 2.8743 8.6164 -6.6170 20 7 1.8844 9.4067 -6.2594 21 14 4.2918 9.2938 -7.6276 22 1 3.9831 9.1488 -9.0729 23 1 4.4880 10.7299 -7.3049 24 1 5.5314 8.5409 -7.3083 25 6 1.4680 5.9282 -3.3208 26 7 1.6978 2.2738 -0.8665 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3120 1.3752 1.7454 33 1 3.7134 3.9064 1.0795 34 1 0.9945 2.6744 -2.3260 35 1 -0.2941 3.7222 -2.9733 36 1 2.2831 2.9088 -4.3951 37 1 0.6329 2.3798 -4.8025 38 1 1.3531 4.2046 -6.3066 39 1 0.0062 4.7419 -5.2749 40 1 0.3371 8.1919 -5.0851 41 1 0.3654 7.7445 -6.8077 42 1 -0.3214 6.6231 -5.6081 43 1 1.8911 10.3409 -6.5202 44 1 0.4521 6.3227 -3.3432 45 1 2.1415 6.6718 -2.8946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027601949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:15 Heat of formation + Delta-G solvation = 85.600414 kcal Electronic energy + Delta-G solvation = -25970.543022 eV Core-core repulsion = 22412.428195 eV Total energy + Delta-G solvation = -3558.114827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.78742 -39.49891 -37.22117 -35.01580 -34.77146 -32.29271 -31.19474 -30.84537 -30.22397 -28.51100 -25.94291 -25.75526 -24.21246 -23.37380 -22.01792 -21.66379 -21.13796 -19.58285 -18.60927 -17.41868 -16.77379 -16.55277 -16.25943 -15.38052 -14.96452 -14.80968 -14.48149 -14.07602 -13.94264 -13.80559 -13.54619 -13.23826 -13.06765 -12.79541 -12.56242 -12.52117 -12.40299 -12.17038 -11.82158 -11.75295 -11.39080 -10.90038 -10.78800 -10.71714 -10.29621 -10.25762 -10.12833 -9.94234 -9.82357 -9.65452 -9.47367 -9.35268 -9.13526 -8.49651 -8.14341 -6.64962 -5.64525 -3.13254 1.58604 2.10633 2.23173 3.36583 3.45096 3.50031 3.52019 3.66188 4.05718 4.45320 4.54775 4.57848 4.60930 4.71783 5.01505 5.15020 5.28018 5.33144 5.39243 5.46787 5.55825 5.61036 5.64240 5.67306 5.74037 5.85268 5.94857 6.08167 6.16429 6.29334 6.36895 6.41731 6.52348 6.62716 6.70812 6.85091 6.94472 7.05357 7.15245 7.49509 7.73957 7.83325 7.89348 7.93158 8.47989 8.55530 9.32333 9.93708 10.43510 11.39645 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.003404 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.370499 B = 8222.852387 C = 8722.617225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.290 5.290 4 C -0.019 4.019 5 C -0.180 4.180 6 C 0.000 4.000 7 C 0.593 3.407 8 O -0.536 6.536 9 N -0.591 5.591 10 C 0.074 3.926 11 C -0.126 4.126 12 C -0.134 4.134 13 C 0.170 3.830 14 H 0.064 0.936 15 N -0.593 5.593 16 C 0.163 3.837 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.908 5.908 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.099 3.901 26 N -0.261 5.261 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.134 0.866 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.044 0.956 42 H -0.003 1.003 43 H 0.252 0.748 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -22.289 13.649 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.077 5.077 4 C -0.161 4.161 5 C -0.208 4.208 6 C -0.160 4.160 7 C 0.379 3.621 8 O -0.411 6.411 9 N -0.323 5.323 10 C -0.049 4.049 11 C -0.165 4.165 12 C -0.173 4.173 13 C 0.061 3.939 14 H 0.082 0.918 15 N -0.315 5.315 16 C 0.019 3.981 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.553 5.553 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.025 4.025 26 N -0.096 5.096 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.015 0.985 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.968 -22.152 13.064 26.022 hybrid contribution 1.195 0.778 -0.011 1.426 sum -2.773 -21.374 13.053 25.198 Atomic orbital electron populations 1.22086 0.93111 1.03341 1.04062 1.21985 0.96693 0.77039 1.04669 1.45869 1.32566 1.10488 1.18798 1.22835 0.99223 0.95497 0.98593 1.21786 1.04579 0.96049 0.98402 1.22164 1.01947 0.92908 0.98998 1.17058 0.78954 0.85658 0.80461 1.90793 1.48361 1.33614 1.68381 1.48112 1.49273 1.14414 1.20545 1.22688 0.95442 0.89728 0.97085 1.21852 1.01345 0.98253 0.95086 1.22098 1.01038 0.95139 0.99047 1.20714 0.97465 0.87981 0.87775 0.91783 1.43915 1.05319 1.31178 1.51064 1.20810 0.83261 0.93296 1.00751 1.19238 0.96015 0.92174 1.30959 0.91457 1.25119 0.97828 0.95841 1.00638 1.70049 1.31830 1.05000 1.48432 0.86223 0.82143 0.78216 0.79771 1.21567 1.21674 1.20480 1.22661 1.02120 0.85561 0.92136 1.73100 1.23158 0.98382 1.14932 0.91832 0.90644 0.90298 0.88885 0.88043 0.80325 0.82080 0.84947 0.92373 0.92168 0.91673 0.91975 0.92368 0.95224 0.93743 0.98465 0.93754 0.91993 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.02 37.16 0.37 -0.44 16 2 C 0.12 0.57 7.12 -4.04 -0.03 0.54 16 3 N -0.29 -2.70 3.40 -61.33 -0.21 -2.91 16 4 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 5 C -0.18 -2.26 10.81 -39.36 -0.43 -2.68 16 6 C 0.00 0.00 6.90 -82.76 -0.57 -0.57 16 7 C 0.59 11.21 7.70 -12.39 -0.10 11.12 16 8 O -0.54 -11.94 16.36 5.31 0.09 -11.86 16 9 N -0.59 -10.76 2.97 -173.66 -0.52 -11.28 16 10 C 0.07 1.10 6.32 -3.71 -0.02 1.07 16 11 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 12 C -0.13 -2.40 5.13 -26.69 -0.14 -2.53 16 13 C 0.17 3.70 2.75 -67.59 -0.19 3.51 16 14 H 0.06 1.48 7.88 -51.93 -0.41 1.07 16 15 N -0.59 -15.34 2.82 -173.09 -0.49 -15.83 16 16 C 0.16 4.12 7.89 59.85 0.47 4.59 16 17 C -0.25 -7.22 9.59 -15.06 -0.14 -7.37 16 18 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 19 C 0.00 0.12 5.23 -17.43 -0.09 0.02 16 20 N -0.91 -27.13 10.46 55.49 0.58 -26.55 16 21 Si 0.91 22.56 29.56 -169.99 -5.02 17.54 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.10 2.09 5.79 -3.49 -0.02 2.07 16 26 N -0.26 -3.30 8.01 33.42 0.27 -3.03 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.20 8.04 -51.93 -0.42 -0.22 16 32 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 34 H 0.13 1.81 3.70 -118.20 -0.44 1.37 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 40 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 41 H 0.04 1.20 7.26 -51.93 -0.38 0.83 16 42 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.31 7.53 -51.93 -0.39 0.92 16 45 H 0.09 2.21 7.03 -51.93 -0.37 1.85 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -34.62 356.92 -8.39 -43.01 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.23 Total: -1.43 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.24 Total: 6.95 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.36 Total: -59.60 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.62 -8.39 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027601949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.614 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds