Wall clock time and date at job start Tue Mar 31 2020 03:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47248 * 2 1 4 4 C 1.34778 * 120.00009 * 274.47914 * 3 2 1 5 5 O 1.21621 * 119.99969 * 185.29333 * 4 3 2 6 6 C 1.47324 * 120.00163 * 5.29671 * 4 3 2 7 7 C 1.36418 * 126.23891 * 185.75205 * 6 4 3 8 8 N 1.35372 * 106.87062 * 179.87795 * 7 6 4 9 9 C 1.46510 * 126.13338 * 180.14137 * 8 7 6 10 10 C 1.52999 * 109.46869 * 270.25838 * 9 8 7 11 11 C 1.35846 * 107.73224 * 0.38159 * 8 7 6 12 12 N 1.30171 * 109.00391 * 359.75887 * 11 8 7 13 13 C 1.46503 * 120.00047 * 94.48225 * 3 2 1 14 14 H 1.09005 * 110.91691 * 179.62018 * 13 3 2 15 15 C 1.55163 * 111.00197 * 303.51613 * 13 3 2 16 16 C 1.54316 * 102.94162 * 82.57313 * 15 13 3 17 17 N 1.47018 * 107.27358 * 22.19179 * 16 15 13 18 18 C 1.36941 * 125.65003 * 180.79211 * 17 16 15 19 19 H 1.08001 * 120.00105 * 180.02562 * 18 17 16 20 20 C 1.38807 * 119.99764 * 0.02809 * 18 17 16 21 21 N 1.31619 * 120.00317 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99767 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47458 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46982 * 119.99893 * 22 20 18 25 25 H 1.48494 * 109.47111 * 239.99552 * 22 20 18 26 26 C 1.47430 * 108.70444 * 1.06188 * 17 16 15 27 27 H 1.08993 * 109.46718 * 176.12838 * 1 2 3 28 28 H 1.08999 * 109.46827 * 296.12795 * 1 2 3 29 29 H 1.09003 * 109.46818 * 56.12950 * 1 2 3 30 30 H 1.09004 * 109.47389 * 239.99996 * 2 1 3 31 31 H 1.09006 * 109.47341 * 119.99942 * 2 1 3 32 32 H 1.08005 * 126.55907 * 0.02562 * 7 6 4 33 33 H 1.08992 * 109.46894 * 30.26065 * 9 8 7 34 34 H 1.09000 * 109.46609 * 150.26160 * 9 8 7 35 35 H 1.09000 * 109.47252 * 300.00391 * 10 9 8 36 36 H 1.09003 * 109.47042 * 59.99968 * 10 9 8 37 37 H 1.09000 * 109.46903 * 179.97438 * 10 9 8 38 38 H 1.08003 * 125.50067 * 179.72045 * 11 8 7 39 39 H 1.09005 * 110.71790 * 324.20519 * 15 13 3 40 40 H 1.08991 * 110.72053 * 200.93857 * 15 13 3 41 41 H 1.09007 * 109.88169 * 262.77511 * 16 15 13 42 42 H 1.08999 * 110.00999 * 141.68207 * 16 15 13 43 43 H 0.97003 * 119.99691 * 179.97438 * 21 20 18 44 44 H 1.08992 * 110.36847 * 94.70600 * 26 17 16 45 45 H 1.09003 * 110.36566 * 217.03509 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1571 2.0469 -1.1636 5 8 2.6524 3.1577 -1.1735 6 6 1.7087 1.4292 -2.4237 7 6 1.8856 1.9359 -3.6779 8 7 1.3269 1.0544 -4.5401 9 6 1.2814 1.1833 -5.9988 10 6 0.0107 1.9323 -6.4051 11 6 0.8114 0.0314 -3.8099 12 7 1.0389 0.2548 -2.5478 13 6 2.3560 2.0388 1.2649 14 1 2.7085 3.0558 1.0928 15 6 1.1476 2.0263 2.2381 16 6 1.2332 0.6243 2.8773 17 7 2.6209 0.1616 2.7305 18 6 3.1088 -1.0457 3.1545 19 1 4.1487 -1.2925 2.9994 20 6 2.2666 -1.9523 3.7836 21 7 0.9994 -1.6514 3.9730 22 14 2.9319 -3.5994 4.3613 23 1 4.3767 -3.6931 4.0312 24 1 2.7505 -3.7187 5.8303 25 1 2.1972 -4.6961 3.6812 26 6 3.4019 1.2152 2.0570 27 1 -0.3632 -1.0253 -0.0694 28 1 -0.3633 0.4526 0.9227 29 1 -0.3633 0.5728 -0.8533 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.3792 2.8617 -3.9340 33 1 2.1551 1.7371 -6.3420 34 1 1.2790 0.1916 -6.4512 35 1 -0.8631 1.3784 -6.0618 36 1 0.0131 2.9240 -5.9526 37 1 -0.0229 2.0286 -7.4904 38 1 0.2954 -0.8281 -4.2115 39 1 0.2116 2.1448 1.6922 40 1 1.2545 2.8027 2.9955 41 1 0.5580 -0.0595 2.3628 42 1 0.9706 0.6795 3.9338 43 1 0.4108 -2.2851 4.4122 44 1 3.9027 1.8448 2.7924 45 1 4.1297 0.7720 1.3772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034014749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:06 Heat of formation + Delta-G solvation = 77.634361 kcal Electronic energy + Delta-G solvation = -26514.880921 eV Core-core repulsion = 22956.420660 eV Total energy + Delta-G solvation = -3558.460261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.20544 -39.45839 -37.24809 -35.29556 -34.21168 -32.18901 -30.52586 -29.92725 -29.65227 -29.03071 -26.84263 -24.66459 -24.17356 -23.17779 -22.11489 -21.06931 -20.16822 -19.95404 -18.49670 -17.33965 -16.82213 -16.39429 -15.64514 -15.52469 -14.76575 -14.61178 -14.41628 -14.15031 -13.88204 -13.76507 -13.68321 -13.14904 -12.93419 -12.62842 -12.36815 -12.27977 -11.89140 -11.81034 -11.77807 -11.55164 -10.96338 -10.87909 -10.75937 -10.49127 -10.26678 -10.16035 -10.03253 -9.88566 -9.78032 -9.62922 -9.54825 -9.10303 -8.61995 -8.53942 -7.90739 -6.69810 -5.65398 -2.98642 1.69896 2.50785 2.56238 3.43740 3.49971 3.51868 3.64835 3.87921 4.21879 4.49579 4.52230 4.55241 4.61930 4.76483 5.09202 5.17474 5.20483 5.47169 5.53553 5.55445 5.57920 5.67650 5.87085 6.01581 6.02814 6.07841 6.32931 6.35752 6.39633 6.48957 6.55432 6.64906 6.71029 6.78143 6.87168 6.94441 7.02478 7.27127 7.43362 7.65146 7.73830 7.88728 7.93171 8.16122 8.32270 8.74615 9.28160 9.87761 10.54045 11.45476 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.003967 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.714954 B = 7056.469165 C = 7709.037450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.092 3.908 3 N -0.568 5.568 4 C 0.594 3.406 5 O -0.566 6.566 6 C -0.049 4.049 7 C 0.025 3.975 8 N -0.460 5.460 9 C 0.100 3.900 10 C -0.171 4.171 11 C 0.173 3.827 12 N -0.441 5.441 13 C 0.123 3.877 14 H 0.097 0.903 15 C -0.157 4.157 16 C 0.168 3.832 17 N -0.601 5.601 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.125 3.875 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.183 0.817 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.207 0.793 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.251 0.749 44 H 0.029 0.971 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 5.574 -20.582 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 N -0.297 5.297 4 C 0.381 3.619 5 O -0.447 6.447 6 C -0.178 4.178 7 C -0.114 4.114 8 N -0.143 5.143 9 C -0.023 4.023 10 C -0.229 4.229 11 C -0.110 4.110 12 N -0.160 5.160 13 C 0.019 3.981 14 H 0.115 0.885 15 C -0.196 4.196 16 C 0.043 3.957 17 N -0.328 5.328 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.001 4.001 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.200 0.800 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.223 0.777 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.564 5.427 -19.906 20.791 hybrid contribution 0.367 -0.517 -0.396 0.747 sum -2.197 4.909 -20.301 21.002 Atomic orbital electron populations 1.22082 0.96494 1.01191 1.00570 1.22165 0.94544 0.80761 1.05486 1.47689 1.62422 1.14938 1.04676 1.17038 0.78187 0.84269 0.82360 1.90718 1.46952 1.20179 1.86826 1.20638 1.08073 0.95650 0.93461 1.22493 1.02393 0.97173 0.89301 1.45533 1.42793 1.18217 1.07744 1.21905 1.00366 1.03154 0.76831 1.22179 0.97082 1.01304 1.02311 1.25344 1.03554 0.95084 0.86991 1.71082 1.14502 1.14444 1.15940 1.22236 0.96492 0.96635 0.82753 0.88476 1.23283 0.97382 1.00976 0.97951 1.21396 0.86700 0.88974 0.98582 1.44593 1.05591 1.14383 1.68256 1.19073 0.94491 0.90484 1.31483 0.90506 1.24761 0.95840 0.98557 1.01075 1.69982 1.03580 1.35180 1.47797 0.86089 0.77881 0.83964 0.78099 1.20628 1.21923 1.21812 1.21898 0.93409 0.91031 0.93811 0.92873 0.92828 0.93391 0.90322 0.85941 0.79980 0.88918 0.88592 0.91611 0.91683 0.90509 0.77690 0.91705 0.91653 0.91928 0.94215 0.93884 0.95302 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.64 37.16 0.32 -2.44 16 2 C 0.09 1.87 4.70 -4.04 -0.02 1.85 16 3 N -0.57 -11.29 2.53 -164.95 -0.42 -11.70 16 4 C 0.59 11.47 7.63 -12.56 -0.10 11.37 16 5 O -0.57 -11.85 16.28 5.26 0.09 -11.77 16 6 C -0.05 -0.80 6.39 -83.09 -0.53 -1.33 16 7 C 0.02 0.31 11.27 -16.65 -0.19 0.12 16 8 N -0.46 -4.33 2.73 -118.36 -0.32 -4.66 16 9 C 0.10 0.49 6.84 -4.04 -0.03 0.46 16 10 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 11 C 0.17 1.89 12.55 -89.91 -1.13 0.76 16 12 N -0.44 -6.69 6.11 -11.03 -0.07 -6.76 16 13 C 0.12 2.48 3.67 -65.78 -0.24 2.24 16 14 H 0.10 1.91 7.02 -51.93 -0.36 1.55 16 15 C -0.16 -3.16 5.99 -24.90 -0.15 -3.31 16 16 C 0.17 4.06 4.15 -3.07 -0.01 4.04 16 17 N -0.60 -15.18 1.90 -170.08 -0.32 -15.51 16 18 C -0.23 -6.24 9.91 -15.06 -0.15 -6.39 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 21 N -0.92 -26.40 10.31 55.49 0.57 -25.83 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.13 2.75 6.53 -2.53 -0.02 2.73 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 1.08 4.60 -51.93 -0.24 0.84 16 29 H 0.05 0.87 6.45 -51.93 -0.34 0.53 16 30 H 0.08 1.57 5.83 -51.93 -0.30 1.27 16 31 H 0.12 2.93 4.37 -51.93 -0.23 2.70 16 32 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.21 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.06 1.26 6.81 -51.93 -0.35 0.91 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.61 4.36 -51.93 -0.23 1.38 16 42 H 0.04 1.08 7.48 -51.93 -0.39 0.69 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -33.02 347.17 -8.85 -41.87 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.63 Total: 2.61 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.95 Total: 9.47 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.56 Total: -64.46 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.02 -8.85 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034014749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.504 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds