Wall clock time and date at job start Tue Mar 31 2020 03:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47276 * 2 1 4 4 C 1.34260 * 125.75492 * 124.71703 * 3 2 1 5 5 C 1.38046 * 107.41659 * 179.85061 * 4 3 2 6 6 C 1.47419 * 126.41517 * 180.15976 * 5 4 3 7 7 O 1.21610 * 120.00085 * 180.29673 * 6 5 4 8 8 N 1.34780 * 120.00202 * 0.30167 * 6 5 4 9 9 C 1.46503 * 120.00143 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47052 * 179.97438 * 9 8 6 11 11 H 1.09008 * 112.84660 * 43.80404 * 10 9 8 12 12 C 1.53778 * 113.61509 * 174.99754 * 10 9 8 13 13 C 1.53781 * 87.08160 * 139.98434 * 12 10 9 14 14 H 1.09005 * 113.61281 * 89.11697 * 13 12 10 15 15 N 1.46498 * 113.61473 * 219.93475 * 13 12 10 16 16 C 1.36937 * 120.00007 * 204.99519 * 15 13 12 17 17 H 1.07996 * 119.99866 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99987 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46914 * 90.00000 * 20 18 16 22 22 H 1.48500 * 109.47408 * 210.00234 * 20 18 16 23 23 H 1.48498 * 109.47066 * 330.00657 * 20 18 16 24 24 C 1.53782 * 113.61725 * 272.50114 * 10 9 8 25 25 C 1.41290 * 107.16658 * 0.40940 * 5 4 3 26 26 C 1.50706 * 125.98562 * 179.71023 * 25 5 4 27 27 N 1.30445 * 108.02873 * 359.75108 * 25 5 4 28 28 H 1.09002 * 109.46968 * 299.99913 * 1 2 3 29 29 H 1.08998 * 109.47310 * 60.00201 * 1 2 3 30 30 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47344 * 239.99773 * 2 1 3 32 32 H 1.08998 * 109.47310 * 119.99799 * 2 1 3 33 33 H 1.08003 * 126.28916 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99731 * 359.97438 * 8 6 5 35 35 H 1.08997 * 109.46768 * 299.99649 * 9 8 6 36 36 H 1.09002 * 109.46790 * 59.99830 * 9 8 6 37 37 H 1.08999 * 113.61734 * 254.53126 * 12 10 9 38 38 H 1.08997 * 113.61066 * 25.43732 * 12 10 9 39 39 H 0.96998 * 119.99805 * 25.00500 * 15 13 12 40 40 H 0.97005 * 119.99754 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.61083 * 334.56365 * 24 10 9 42 42 H 1.08996 * 113.61792 * 105.46978 * 24 10 9 43 43 H 1.09003 * 109.47108 * 270.02085 * 26 25 5 44 44 H 1.09001 * 109.46966 * 30.02283 * 26 25 5 45 45 H 1.08997 * 109.47069 * 150.01954 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8649 1.9140 0.8956 5 6 3.0712 3.2310 0.5366 6 6 3.9328 4.2032 1.2333 7 8 4.0255 5.3419 0.8164 8 7 4.6181 3.8303 2.3324 9 6 5.4740 4.7967 3.0251 10 6 6.1317 4.1229 4.2310 11 1 6.5116 3.1267 4.0042 12 6 7.1478 5.0187 4.9589 13 6 6.5886 4.4503 6.2738 14 1 7.0929 3.5431 6.6067 15 7 6.4564 5.4503 7.3362 16 6 6.4762 5.0613 8.6490 17 1 6.5897 4.0173 8.9011 18 6 6.3515 6.0089 9.6556 19 7 6.2137 7.2812 9.3483 20 14 6.3793 5.4783 11.4465 21 1 7.7778 5.4944 11.9458 22 1 5.5549 6.4139 12.2528 23 1 5.8275 4.1047 11.5644 24 6 5.2805 4.1831 5.5104 25 6 2.2972 3.4740 -0.6202 26 6 2.2044 4.7808 -1.3651 27 7 1.6763 2.3694 -0.9300 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3053 1.4052 1.7403 34 1 4.5439 2.9222 2.6651 35 1 6.2451 5.1536 2.3425 36 1 4.8706 5.6388 3.3641 37 1 8.1857 4.7439 4.7708 38 1 6.9611 6.0848 4.8297 39 1 6.3547 6.3880 7.1097 40 1 6.1261 7.9434 10.0518 41 1 4.5835 5.0208 5.5321 42 1 4.8110 3.2337 5.7676 43 1 1.3886 5.3759 -0.9547 44 1 3.1418 5.3269 -1.2589 45 1 2.0158 4.5847 -2.4206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086213200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:45 Heat of formation + Delta-G solvation = 59.814617 kcal Electronic energy + Delta-G solvation = -24179.381628 eV Core-core repulsion = 20620.148645 eV Total energy + Delta-G solvation = -3559.232983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68543 -39.39687 -38.28018 -35.19659 -34.58708 -33.30151 -31.75328 -30.69946 -30.00201 -28.13286 -27.02459 -25.07771 -24.20630 -23.66595 -22.43012 -21.13368 -20.49158 -19.77079 -19.01497 -17.82178 -17.04152 -16.40834 -16.03036 -15.84930 -15.25487 -14.81966 -14.63631 -14.55739 -14.30759 -13.88078 -13.53196 -13.43370 -13.16058 -13.08755 -12.88672 -12.67345 -12.41532 -12.16274 -11.89089 -11.86454 -11.78617 -11.37443 -11.22667 -11.02715 -10.84465 -10.51860 -10.21496 -10.13870 -9.81739 -9.77492 -9.61861 -9.46365 -9.07334 -8.87365 -8.75573 -6.96129 -5.78292 -3.07127 1.25335 1.98750 2.00593 3.28770 3.42235 3.43607 3.47176 3.49195 3.94193 4.26001 4.40884 4.51339 4.58114 4.65667 4.85471 4.97304 5.01228 5.09522 5.18641 5.21539 5.25959 5.28419 5.47108 5.53329 5.57417 5.59774 5.75690 5.84221 5.86281 5.89365 5.97965 6.10172 6.28689 6.33168 6.35861 6.38112 6.47712 6.54311 6.61094 6.84356 7.12440 7.32137 7.60247 7.68533 8.32863 8.40315 9.51256 10.09968 10.44063 11.44077 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.002331 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.531381 B =12008.110715 C =12757.777856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.359 5.359 4 C 0.099 3.901 5 C -0.286 4.286 6 C 0.591 3.409 7 O -0.544 6.544 8 N -0.724 5.724 9 C 0.134 3.866 10 C -0.127 4.127 11 H 0.087 0.913 12 C -0.142 4.142 13 C 0.165 3.835 14 H 0.075 0.925 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.161 4.161 25 C 0.131 3.869 26 C -0.077 4.077 27 N -0.301 5.301 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.395 0.605 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -15.688 -21.249 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.137 5.137 4 C -0.053 4.053 5 C -0.301 4.301 6 C 0.378 3.622 7 O -0.422 6.422 8 N -0.375 5.375 9 C 0.011 3.989 10 C -0.146 4.146 11 H 0.105 0.895 12 C -0.182 4.182 13 C 0.053 3.947 14 H 0.093 0.907 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.202 4.202 25 C -0.036 4.036 26 C -0.136 4.136 27 N -0.123 5.123 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.199 0.801 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.825 -15.649 -22.143 28.514 hybrid contribution 0.433 -0.254 1.813 1.881 sum -8.392 -15.903 -20.330 27.141 Atomic orbital electron populations 1.22061 0.93384 1.03116 1.03866 1.21830 0.96516 0.76882 1.04217 1.48521 1.34389 1.10441 1.20363 1.23113 0.93286 0.93918 0.94980 1.20307 1.11653 0.94533 1.03637 1.17244 0.78682 0.86600 0.79680 1.90744 1.65278 1.19957 1.66209 1.45876 1.47828 1.15193 1.28616 1.21418 0.92947 0.91569 0.92946 1.22636 0.99097 0.99517 0.93376 0.89491 1.23445 0.97479 0.99629 0.97650 1.21522 0.93125 0.93271 0.86751 0.90750 1.42415 1.85887 1.05417 1.01358 1.19294 1.42287 0.92934 0.82997 0.91137 1.24774 1.02793 0.95352 0.98054 1.69664 1.56654 0.99853 1.31796 0.86192 0.77436 0.77379 0.85183 1.21696 1.21764 1.20779 1.23947 0.99861 1.01164 0.95199 1.22487 0.92515 0.95057 0.93550 1.20346 1.04887 0.90041 0.98308 1.77146 1.24488 0.96820 1.13872 0.91872 0.90931 0.90446 0.89316 0.88220 0.80105 0.77154 0.91725 0.91177 0.92030 0.90061 0.78042 0.93441 0.90313 0.92897 0.90211 0.88531 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.09 37.15 0.37 -0.43 16 2 C 0.13 0.60 7.21 -4.04 -0.03 0.57 16 3 N -0.36 -3.13 3.65 -60.81 -0.22 -3.35 16 4 C 0.10 0.83 10.94 -16.56 -0.18 0.65 16 5 C -0.29 -3.34 6.13 -105.07 -0.64 -3.98 16 6 C 0.59 7.97 7.81 -12.52 -0.10 7.87 16 7 O -0.54 -9.14 14.92 5.27 0.08 -9.06 16 8 N -0.72 -8.29 5.54 -61.38 -0.34 -8.63 16 9 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 10 C -0.13 -1.65 3.75 -89.81 -0.34 -1.99 16 11 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 12 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16 13 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 14 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 15 N -0.71 -17.69 5.40 -52.63 -0.28 -17.97 16 16 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.16 -2.60 7.43 -25.92 -0.19 -2.79 16 25 C 0.13 1.59 7.26 -82.02 -0.60 1.00 16 26 C -0.08 -0.82 9.92 36.01 0.36 -0.46 16 27 N -0.30 -3.48 12.33 33.90 0.42 -3.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.21 8.06 -51.93 -0.42 -0.21 16 33 H 0.18 0.79 7.46 -52.48 -0.39 0.40 16 34 H 0.39 3.36 7.40 -40.82 -0.30 3.06 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.39 10.22 7.92 -40.82 -0.32 9.90 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 1.43 7.89 -51.93 -0.41 1.02 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.14 6.55 -51.93 -0.34 0.80 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -34.61 376.05 -8.29 -42.91 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.21 Total: 8.46 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.11 Total: -4.75 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.30 Total: -60.43 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.61 -8.29 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086213200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.722 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds