Wall clock time and date at job start Tue Mar 31 2020 03:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46821 * 2 1 4 4 C 1.53001 * 109.46911 * 239.99989 * 2 1 3 5 5 N 1.46504 * 109.46772 * 184.99937 * 4 2 1 6 6 C 1.36930 * 120.00139 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00478 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99567 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46891 * 60.00071 * 10 8 6 12 12 H 1.48493 * 109.47022 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47213 * 300.00308 * 10 8 6 14 14 N 1.46499 * 109.46848 * 119.99512 * 2 1 3 15 15 C 1.46503 * 119.99610 * 60.00779 * 14 2 1 16 16 C 1.34778 * 120.00102 * 239.99826 * 14 2 1 17 17 O 1.21568 * 120.00023 * 355.82748 * 16 14 2 18 18 C 1.47704 * 119.99708 * 175.82652 * 16 14 2 19 19 N 1.32210 * 126.67984 * 5.32937 * 18 16 14 20 20 N 1.28849 * 110.14919 * 179.84575 * 19 18 16 21 21 H 0.96994 * 124.98106 * 180.02562 * 20 19 18 22 22 C 1.34315 * 110.03974 * 0.36431 * 20 19 18 23 23 C 1.35584 * 107.22044 * 359.85251 * 22 20 19 24 24 C 1.50368 * 124.62112 * 179.78421 * 23 22 20 25 25 C 1.53479 * 108.28565 * 343.75468 * 24 23 22 26 26 C 1.53106 * 109.51132 * 49.48540 * 25 24 23 27 27 C 1.50715 * 128.90131 * 179.88417 * 22 20 19 28 28 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46804 * 300.00385 * 1 2 3 30 30 H 1.09001 * 109.46736 * 60.00235 * 1 2 3 31 31 H 1.09000 * 109.47292 * 304.99667 * 4 2 1 32 32 H 1.08997 * 109.47166 * 65.00493 * 4 2 1 33 33 H 0.97010 * 119.99571 * 359.97438 * 5 4 2 34 34 H 0.97007 * 120.00220 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47422 * 95.70731 * 15 14 2 36 36 H 1.09000 * 109.46420 * 215.70850 * 15 14 2 37 37 H 1.08999 * 109.47016 * 335.70327 * 15 14 2 38 38 H 1.08998 * 109.70059 * 103.45527 * 24 23 22 39 39 H 1.09001 * 109.70489 * 224.05579 * 24 23 22 40 40 H 1.09000 * 109.46349 * 289.46675 * 25 24 23 41 41 H 1.09002 * 109.46141 * 169.49837 * 25 24 23 42 42 H 1.08995 * 109.44079 * 169.89180 * 26 25 24 43 43 H 1.09004 * 109.44131 * 50.00444 * 26 25 24 44 44 H 1.08994 * 109.69333 * 283.03213 * 27 22 20 45 45 H 1.09004 * 109.69005 * 43.61074 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1839 -1.4388 -2.2066 7 1 3.6469 -1.8440 -3.0515 8 6 5.5674 -1.5379 -2.1513 9 7 6.2219 -1.0437 -1.1219 10 14 6.5002 -2.3728 -3.5378 11 1 6.2427 -1.6533 -4.8111 12 1 7.9549 -2.3476 -3.2410 13 1 6.0444 -3.7804 -3.6638 14 7 2.0184 -0.6905 1.1962 15 6 1.6645 -2.0931 1.4280 16 6 2.7932 -0.0355 2.0834 17 8 3.1497 1.1039 1.8542 18 6 3.2093 -0.7021 3.3341 19 7 2.9831 -1.9603 3.6714 20 7 3.4890 -2.2068 4.8305 21 1 3.4483 -3.0631 5.2842 22 6 4.0744 -1.1022 5.3216 23 6 3.9170 -0.1207 4.3995 24 6 4.4229 1.2867 4.5550 25 6 4.7550 1.5182 6.0355 26 6 5.6256 0.3687 6.5501 27 6 4.7886 -0.9140 6.6354 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -1.7198 -1.2952 32 1 1.7518 -0.1583 -2.1370 33 1 3.9825 -0.4621 -0.4318 34 1 7.1887 -1.1133 -1.0830 35 1 2.4652 -2.7353 1.0614 36 1 1.5244 -2.2607 2.4959 37 1 0.7404 -2.3268 0.8993 38 1 5.3202 1.4234 3.9514 39 1 3.6544 1.9909 4.2364 40 1 3.8313 1.5608 6.6125 41 1 5.2945 2.4591 6.1438 42 1 6.0086 0.6185 7.5395 43 1 6.4608 0.2123 5.8673 44 1 4.0592 -0.8238 7.4403 45 1 5.4411 -1.7665 6.8242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:48 Heat of formation + Delta-G solvation = 50.822746 kcal Electronic energy + Delta-G solvation = -26242.012130 eV Core-core repulsion = 22682.389231 eV Total energy + Delta-G solvation = -3559.622900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.70706 -39.24840 -36.95105 -36.14269 -33.87622 -32.69239 -31.57515 -30.03175 -29.90684 -29.23781 -26.44584 -25.53706 -24.06155 -23.75230 -22.40930 -22.16059 -20.30792 -19.02312 -18.57873 -17.68484 -16.95071 -16.52088 -15.88301 -15.64688 -14.87106 -14.58507 -14.37531 -13.87256 -13.81076 -13.57896 -13.38780 -13.12326 -13.08329 -13.02070 -12.54536 -12.23498 -12.16194 -12.08989 -11.88948 -11.74778 -11.34408 -10.95791 -10.85766 -10.76110 -10.69269 -10.65161 -10.38632 -10.22208 -9.98113 -9.58944 -9.47258 -9.11160 -8.76603 -8.51045 -8.01893 -6.78191 -5.62199 -2.91327 1.83229 2.25548 2.89623 3.48862 3.50779 3.54056 3.55719 3.86106 4.45400 4.59899 4.68144 4.75791 4.79304 5.14298 5.22879 5.26224 5.36003 5.45099 5.51216 5.53869 5.56477 5.63900 5.70579 5.73011 5.80907 5.94580 6.01715 6.10700 6.11463 6.13200 6.21988 6.30553 6.35270 6.38830 6.45643 6.50972 6.60678 6.68720 6.86689 7.06458 7.22750 7.78826 7.86671 8.04892 8.54998 8.71719 9.66154 10.26879 10.62411 11.59741 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004576 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.268612 B = 6117.616584 C = 7142.330792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.288 1.288 14 N -0.584 5.584 15 C 0.078 3.922 16 C 0.602 3.398 17 O -0.530 6.530 18 C 0.012 3.988 19 N -0.257 5.257 20 N -0.382 5.382 21 H 0.441 0.559 22 C 0.004 3.996 23 C -0.140 4.140 24 C -0.043 4.043 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.045 4.045 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.027 0.973 33 H 0.388 0.612 34 H 0.254 0.746 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 -0.197 18.681 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.316 5.316 15 C -0.065 4.065 16 C 0.388 3.612 17 O -0.405 6.405 18 C -0.148 4.148 19 N -0.093 5.093 20 N -0.093 5.093 21 H 0.284 0.716 22 C -0.123 4.123 23 C -0.150 4.150 24 C -0.081 4.081 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.083 4.083 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.222 0.778 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.651 -0.612 17.968 19.952 hybrid contribution 1.107 -0.534 -0.178 1.242 sum -7.544 -1.146 17.790 19.358 Atomic orbital electron populations 1.22070 0.95222 1.02057 1.01990 1.21416 0.93166 0.98525 0.84659 0.88136 1.20991 0.87165 0.96690 0.93507 1.42303 0.99693 1.70016 1.25172 1.19164 0.89425 1.29404 0.99088 0.91409 1.24740 0.96443 1.01780 0.97976 1.69697 1.07049 1.50746 1.30151 0.86302 0.79034 0.79224 0.81818 1.21323 1.21791 1.21443 1.47479 1.49889 1.12539 1.21685 1.22024 1.00453 0.81368 1.02654 1.16860 0.78047 0.85055 0.81238 1.90764 1.55274 1.17925 1.76532 1.21633 1.04918 0.90813 0.97450 1.74046 1.19037 1.17525 0.98717 1.43095 1.40713 1.11867 1.13653 0.71570 1.21091 1.04142 0.87724 0.99375 1.19841 1.04197 0.97615 0.93397 1.19976 1.01603 0.91005 0.95528 1.21659 0.99699 0.98097 0.96226 1.21569 0.98390 0.93762 1.01652 1.20188 0.97785 0.99407 0.90965 0.92350 0.92660 0.91370 0.96278 0.95526 0.77804 0.93643 0.92109 0.89364 0.91987 0.90198 0.90014 0.91967 0.91284 0.91133 0.91093 0.90231 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.18 37.16 0.34 -1.81 16 2 C 0.13 2.34 2.79 -67.93 -0.19 2.15 16 3 H 0.10 2.07 6.91 -51.93 -0.36 1.71 16 4 C 0.15 3.13 5.56 -4.04 -0.02 3.11 16 5 N -0.73 -19.97 5.43 -59.91 -0.33 -20.30 16 6 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -29.91 13.06 55.49 0.72 -29.18 16 10 Si 0.90 23.40 29.55 -169.99 -5.02 18.38 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 N -0.58 -11.07 2.24 -175.09 -0.39 -11.46 16 15 C 0.08 1.30 8.81 59.85 0.53 1.83 16 16 C 0.60 12.44 7.38 -12.39 -0.09 12.35 16 17 O -0.53 -12.25 15.23 5.31 0.08 -12.17 16 18 C 0.01 0.21 6.82 -82.99 -0.57 -0.36 16 19 N -0.26 -4.05 8.76 33.28 0.29 -3.76 16 20 N -0.38 -4.58 6.82 33.42 0.23 -4.35 16 21 H 0.44 3.42 8.96 -190.22 -1.70 1.72 16 22 C 0.00 0.04 7.12 -82.45 -0.59 -0.54 16 23 C -0.14 -2.21 5.99 -104.88 -0.63 -2.84 16 24 C -0.04 -0.62 5.51 -27.80 -0.15 -0.77 16 25 C -0.12 -1.20 5.91 -26.43 -0.16 -1.36 16 26 C -0.12 -1.01 5.89 -26.47 -0.16 -1.17 16 27 C -0.04 -0.37 6.31 -27.67 -0.17 -0.55 16 28 H 0.06 0.75 6.67 -51.93 -0.35 0.40 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.39 11.60 7.07 -40.82 -0.29 11.32 16 34 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.34 5.26 -51.93 -0.27 1.07 16 37 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.24 7.79 -51.93 -0.40 0.84 16 40 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -36.59 357.76 -9.44 -46.03 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.31 Total: 9.11 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.10 Total: 2.30 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: 0.53 Total: -69.05 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.59 -9.44 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.855 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds