Wall clock time and date at job start Tue Mar 31 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46821 * 2 1 4 4 C 1.53001 * 109.46911 * 239.99989 * 2 1 3 5 5 N 1.46504 * 109.46772 * 184.99937 * 4 2 1 6 6 C 1.36930 * 120.00139 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00478 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99567 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46891 * 60.00071 * 10 8 6 12 12 H 1.48493 * 109.47022 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47213 * 300.00308 * 10 8 6 14 14 N 1.46499 * 109.46848 * 119.99512 * 2 1 3 15 15 C 1.46503 * 119.99610 * 60.00779 * 14 2 1 16 16 C 1.34778 * 120.00102 * 239.99826 * 14 2 1 17 17 O 1.21568 * 120.00023 * 355.82748 * 16 14 2 18 18 C 1.47704 * 119.99708 * 175.82652 * 16 14 2 19 19 N 1.32210 * 126.67984 * 5.32937 * 18 16 14 20 20 N 1.28849 * 110.14919 * 179.84575 * 19 18 16 21 21 H 0.96994 * 124.98106 * 180.02562 * 20 19 18 22 22 C 1.34315 * 110.03974 * 0.36431 * 20 19 18 23 23 C 1.35584 * 107.22044 * 359.85251 * 22 20 19 24 24 C 1.50368 * 124.62112 * 179.78421 * 23 22 20 25 25 C 1.53479 * 108.28565 * 343.75468 * 24 23 22 26 26 C 1.53106 * 109.51132 * 49.48540 * 25 24 23 27 27 C 1.50715 * 128.90131 * 179.88417 * 22 20 19 28 28 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46804 * 300.00385 * 1 2 3 30 30 H 1.09001 * 109.46736 * 60.00235 * 1 2 3 31 31 H 1.09000 * 109.47292 * 304.99667 * 4 2 1 32 32 H 1.08997 * 109.47166 * 65.00493 * 4 2 1 33 33 H 0.97010 * 119.99571 * 359.97438 * 5 4 2 34 34 H 0.97007 * 120.00220 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47422 * 95.70731 * 15 14 2 36 36 H 1.09000 * 109.46420 * 215.70850 * 15 14 2 37 37 H 1.08999 * 109.47016 * 335.70327 * 15 14 2 38 38 H 1.08998 * 109.70059 * 103.45527 * 24 23 22 39 39 H 1.09001 * 109.70489 * 224.05579 * 24 23 22 40 40 H 1.09000 * 109.46349 * 289.46675 * 25 24 23 41 41 H 1.09002 * 109.46141 * 169.49837 * 25 24 23 42 42 H 1.08995 * 109.44079 * 169.89180 * 26 25 24 43 43 H 1.09004 * 109.44131 * 50.00444 * 26 25 24 44 44 H 1.08994 * 109.69333 * 283.03213 * 27 22 20 45 45 H 1.09004 * 109.69005 * 43.61074 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1839 -1.4388 -2.2066 7 1 3.6469 -1.8440 -3.0515 8 6 5.5674 -1.5379 -2.1513 9 7 6.2219 -1.0437 -1.1219 10 14 6.5002 -2.3728 -3.5378 11 1 6.2427 -1.6533 -4.8111 12 1 7.9549 -2.3476 -3.2410 13 1 6.0444 -3.7804 -3.6638 14 7 2.0184 -0.6905 1.1962 15 6 1.6645 -2.0931 1.4280 16 6 2.7932 -0.0355 2.0834 17 8 3.1497 1.1039 1.8542 18 6 3.2093 -0.7021 3.3341 19 7 2.9831 -1.9603 3.6714 20 7 3.4890 -2.2068 4.8305 21 1 3.4483 -3.0631 5.2842 22 6 4.0744 -1.1022 5.3216 23 6 3.9170 -0.1207 4.3995 24 6 4.4229 1.2867 4.5550 25 6 4.7550 1.5182 6.0355 26 6 5.6256 0.3687 6.5501 27 6 4.7886 -0.9140 6.6354 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -1.7198 -1.2952 32 1 1.7518 -0.1583 -2.1370 33 1 3.9825 -0.4621 -0.4318 34 1 7.1887 -1.1133 -1.0830 35 1 2.4652 -2.7353 1.0614 36 1 1.5244 -2.2607 2.4959 37 1 0.7404 -2.3268 0.8993 38 1 5.3202 1.4234 3.9514 39 1 3.6544 1.9909 4.2364 40 1 3.8313 1.5608 6.6125 41 1 5.2945 2.4591 6.1438 42 1 6.0086 0.6185 7.5395 43 1 6.4608 0.2123 5.8673 44 1 4.0592 -0.8238 7.4403 45 1 5.4411 -1.7665 6.8242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753699792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:47 Heat of formation + Delta-G solvation = 25.227015 kcal Electronic energy + Delta-G solvation = -26243.122045 eV Core-core repulsion = 22682.389231 eV Total energy + Delta-G solvation = -3560.732814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.83805 -40.78205 -37.96516 -37.67688 -35.84689 -34.06460 -33.13867 -31.81968 -30.90782 -30.30185 -27.86352 -27.39535 -25.49606 -24.67428 -24.37058 -23.09793 -21.76074 -20.13669 -19.95185 -19.11742 -18.80335 -17.83662 -17.19371 -17.08817 -16.63623 -16.17699 -15.46252 -15.38469 -15.12878 -14.95018 -14.69513 -14.63155 -14.17970 -14.09988 -14.08798 -13.73996 -13.69551 -13.31702 -13.13412 -12.99636 -12.91482 -12.75615 -12.54141 -12.19738 -11.84382 -11.75336 -11.71066 -11.69618 -11.57511 -11.46485 -11.02453 -10.90614 -10.30631 -9.67372 -9.48548 -9.01669 -7.93960 -5.24955 0.53804 1.11402 1.42178 1.47416 1.53396 1.82209 2.18649 2.38623 2.54244 3.32629 3.37914 3.66507 3.74562 3.89511 4.04978 4.08291 4.21424 4.25628 4.33444 4.35537 4.37961 4.47101 4.61203 4.67706 4.72699 4.79171 4.81014 4.86713 4.92107 4.99235 5.02910 5.07099 5.14658 5.16193 5.25646 5.30941 5.34490 5.44880 5.49012 5.52794 5.69719 6.16897 6.24580 6.42004 6.85849 7.19805 7.30521 8.07862 8.31502 9.29168 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004576 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.268612 B = 6117.616584 C = 7142.330792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.071 0.929 4 C 0.143 3.857 5 N -0.744 5.744 6 C -0.247 4.247 7 H 0.080 0.920 8 C -0.080 4.080 9 N -0.972 5.972 10 Si 0.979 3.021 11 H -0.276 1.276 12 H -0.297 1.297 13 H -0.274 1.274 14 N -0.585 5.585 15 C 0.085 3.915 16 C 0.588 3.412 17 O -0.573 6.573 18 C -0.029 4.029 19 N -0.266 5.266 20 N -0.360 5.360 21 H 0.461 0.539 22 C 0.029 3.971 23 C -0.176 4.176 24 C -0.043 4.043 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.042 4.042 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.029 0.971 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.112 0.888 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -2.038 20.360 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.089 0.911 4 C 0.016 3.984 5 N -0.386 5.386 6 C -0.378 4.378 7 H 0.098 0.902 8 C -0.271 4.271 9 N -0.623 5.623 10 Si 0.808 3.192 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.200 1.200 14 N -0.316 5.316 15 C -0.058 4.058 16 C 0.376 3.624 17 O -0.451 6.451 18 C -0.186 4.186 19 N -0.103 5.103 20 N -0.075 5.075 21 H 0.310 0.690 22 C -0.100 4.100 23 C -0.186 4.186 24 C -0.081 4.081 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.080 4.080 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.202 0.798 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.738 -2.503 19.625 22.051 hybrid contribution 1.379 0.023 -0.673 1.535 sum -8.359 -2.480 18.952 20.861 Atomic orbital electron populations 1.21981 0.90897 1.03684 1.03367 1.21395 0.96310 0.96461 0.83487 0.91070 1.21210 0.84123 0.97734 0.95329 1.42550 1.02080 1.69806 1.24176 1.19660 0.90052 1.28530 0.99574 0.90224 1.25679 0.97549 1.03160 1.00760 1.69914 1.06818 1.52878 1.32652 0.85129 0.76905 0.78560 0.78652 1.20160 1.22334 1.20015 1.47627 1.49350 1.13340 1.21266 1.22063 1.00334 0.79394 1.03989 1.17396 0.77715 0.84922 0.82364 1.90714 1.56879 1.19799 1.77731 1.21508 1.07422 0.92173 0.97519 1.73897 1.19837 1.16361 1.00254 1.43196 1.38986 1.12841 1.12465 0.69032 1.21674 1.02055 0.86282 0.99963 1.20162 1.05415 0.99039 0.94023 1.19925 0.99394 0.90383 0.98415 1.21636 1.00881 0.99519 0.92859 1.21609 0.97512 0.93316 1.02894 1.20457 0.98451 1.00088 0.89030 0.90486 0.91795 0.89531 0.94853 0.94757 0.79846 0.94313 0.95207 0.87884 0.89150 0.93328 0.92337 0.90572 0.90256 0.87666 0.92950 0.87031 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.18 71.99 0.66 -3.04 16 2 C 0.13 4.82 2.79 45.00 0.13 4.95 16 3 H 0.07 3.12 6.91 -2.39 -0.02 3.11 16 4 C 0.14 6.23 5.56 86.38 0.48 6.71 16 5 N -0.74 -42.15 5.43 -343.45 -1.87 -44.02 16 6 C -0.25 -14.80 9.99 84.04 0.84 -13.96 16 7 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 8 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 9 N -0.97 -65.02 13.06 21.65 0.28 -64.74 16 10 Si 0.98 48.83 29.55 68.60 2.03 50.86 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 13 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 14 N -0.58 -22.98 2.24 -826.15 -1.85 -24.83 16 15 C 0.08 2.81 8.81 127.77 1.13 3.93 16 16 C 0.59 26.03 7.38 86.74 0.64 26.67 16 17 O -0.57 -29.01 15.23 -3.93 -0.06 -29.07 16 18 C -0.03 -1.09 6.82 42.14 0.29 -0.80 16 19 N -0.27 -8.38 8.76 -48.62 -0.43 -8.80 16 20 N -0.36 -8.03 6.82 -48.17 -0.33 -8.36 16 21 H 0.46 5.86 8.96 -219.80 -1.97 3.89 16 22 C 0.03 0.66 7.12 41.57 0.30 0.96 16 23 C -0.18 -5.74 5.99 -20.03 -0.12 -5.86 16 24 C -0.04 -1.32 5.51 29.90 0.16 -1.16 16 25 C -0.11 -2.15 5.91 30.79 0.18 -1.96 16 26 C -0.12 -1.71 5.89 30.76 0.18 -1.53 16 27 C -0.04 -0.53 6.31 29.99 0.19 -0.35 16 28 H 0.08 1.74 6.67 -2.39 -0.02 1.73 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.37 23.40 7.07 -92.70 -0.65 22.74 16 34 H 0.25 16.08 8.31 -92.70 -0.77 15.31 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 3.11 5.26 -2.39 -0.01 3.09 16 37 H 0.09 2.41 6.44 -2.39 -0.02 2.40 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 2.00 7.79 -2.39 -0.02 1.98 16 40 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -85.43 357.76 1.68 -83.75 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -1.61 Total: 35.11 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 5.52 Total: 10.11 kcal Atomic # 7 Polarization: -146.56 SS G_CDS: -4.19 Total: -150.75 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.06 Total: -29.07 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.86 kcal Total: -85.43 1.68 -83.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.974 kcal (2) G-P(sol) polarization free energy of solvation -85.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds