Wall clock time and date at job start Tue Mar 31 2020 04:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47435 * 300.00324 * 3 2 1 6 6 H 1.48506 * 109.47198 * 60.00024 * 3 2 1 7 7 C 1.38805 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.46873 * 125.36263 * 359.97438 * 9 7 2 11 11 C 1.54196 * 106.39624 * 197.86192 * 10 9 7 12 12 H 1.09007 * 109.65010 * 89.90379 * 11 10 9 13 13 O 1.40783 * 110.23323 * 210.33672 * 11 10 9 14 14 C 1.41317 * 118.40090 * 67.69996 * 13 11 10 15 15 C 1.51772 * 111.63624 * 56.77227 * 14 13 11 16 16 N 1.44968 * 111.99523 * 319.67052 * 15 14 13 17 17 C 1.34776 * 117.32232 * 203.54191 * 16 15 14 18 18 O 1.21284 * 119.99857 * 176.30267 * 17 16 15 19 19 C 1.50703 * 120.00392 * 356.30387 * 17 16 15 20 20 C 1.50700 * 109.47267 * 180.02562 * 19 17 16 21 21 C 1.41376 * 128.00716 * 89.99984 * 20 19 17 22 22 N 1.30173 * 106.39364 * 179.73568 * 21 20 19 23 23 O 1.20914 * 111.60892 * 0.02562 * 22 21 20 24 24 C 1.34046 * 111.56540 * 0.02562 * 23 22 21 25 25 C 1.44541 * 125.35220 * 23.25729 * 16 15 14 26 26 H 1.09004 * 109.48711 * 106.13644 * 25 16 15 27 27 C 1.46786 * 125.37003 * 179.97438 * 9 7 2 28 28 H 0.97010 * 120.00267 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.07271 * 317.09819 * 10 9 7 30 30 H 1.08999 * 110.07647 * 78.63051 * 10 9 7 31 31 H 1.09005 * 109.07113 * 177.47460 * 14 13 11 32 32 H 1.09001 * 109.06806 * 296.48094 * 14 13 11 33 33 H 1.09004 * 109.07858 * 198.92758 * 15 14 13 34 34 H 1.08996 * 108.80770 * 80.23012 * 15 14 13 35 35 H 1.09003 * 109.46764 * 59.99737 * 19 17 16 36 36 H 1.09002 * 109.46893 * 300.00315 * 19 17 16 37 37 H 1.07995 * 126.80170 * 359.71752 * 21 20 19 38 38 H 1.07999 * 126.77365 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.82700 * 59.33395 * 27 9 7 40 40 H 1.09003 * 109.90041 * 298.41452 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1367 -2.5253 0.0005 11 6 -0.4384 -3.9678 0.4543 12 1 -0.5379 -3.9976 1.5394 13 8 -1.6321 -4.4244 -0.1362 14 6 -1.6532 -4.6348 -1.5335 15 6 -0.5762 -5.6118 -1.9685 16 7 0.6695 -5.3981 -1.2586 17 6 1.8010 -5.8281 -1.8515 18 8 2.8762 -5.6147 -1.3326 19 6 1.7301 -6.5739 -3.1591 20 6 3.1223 -6.9404 -3.6045 21 6 3.8500 -8.1157 -3.3080 22 7 4.9988 -7.9978 -3.9087 23 8 5.0807 -6.9532 -4.5121 24 6 3.9644 -6.2221 -4.3852 25 6 0.7983 -4.7566 0.0302 26 1 1.0095 -5.5081 0.7910 27 6 1.9374 -3.7223 0.0005 28 1 -0.4851 0.8401 0.0004 29 1 -0.5793 -1.8137 0.6975 30 1 -0.5281 -2.3594 -1.0031 31 1 -2.6289 -5.0274 -1.8198 32 1 -1.4900 -3.6832 -2.0394 33 1 -0.3999 -5.4947 -3.0378 34 1 -0.9243 -6.6267 -1.7768 35 1 1.2616 -5.9413 -3.9131 36 1 1.1401 -7.4811 -3.0284 37 1 3.5186 -8.9465 -2.7029 38 1 3.7735 -5.2525 -4.8209 39 1 2.5669 -3.8404 0.8825 40 1 2.5354 -3.8563 -0.9009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083172690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:17 Heat of formation + Delta-G solvation = 43.962170 kcal Electronic energy + Delta-G solvation = -26314.100640 eV Core-core repulsion = 22520.628487 eV Total energy + Delta-G solvation = -3793.472153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.98160 -40.86430 -38.53159 -36.02003 -34.93387 -34.65286 -32.54155 -32.08559 -30.08672 -29.34345 -27.93659 -26.99129 -24.65308 -23.41145 -23.05248 -22.20027 -20.78990 -19.91656 -18.59416 -17.90703 -17.73201 -17.37309 -16.96134 -16.53258 -15.79641 -15.39070 -15.22208 -14.75679 -14.68606 -14.11210 -13.95050 -13.78416 -13.36638 -13.08073 -12.86203 -12.69538 -12.28547 -12.14882 -11.96059 -11.46367 -11.29641 -11.13490 -10.90368 -10.75963 -10.47902 -10.46012 -10.36614 -10.08072 -9.80062 -9.63970 -9.35317 -8.97835 -8.62804 -8.30868 -6.82276 -5.70113 -3.08339 1.43927 2.13839 2.68030 3.01825 3.21612 3.38658 3.44964 3.47461 4.03167 4.18491 4.45241 4.52379 4.55693 4.68578 4.78477 5.00509 5.01998 5.10494 5.20777 5.29307 5.37948 5.49753 5.53899 5.56910 5.63229 5.69557 5.79356 5.88034 5.91421 6.07806 6.20025 6.50411 6.79607 7.11168 7.32276 7.39595 7.58954 7.70489 7.84549 8.16947 8.24655 8.32387 9.20189 9.80564 10.42916 11.36752 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.004699 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.583426 B = 5956.844148 C = 7361.895922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.140 3.860 11 C 0.067 3.933 12 H 0.113 0.887 13 O -0.370 6.370 14 C 0.057 3.943 15 C 0.076 3.924 16 N -0.588 5.588 17 C 0.504 3.496 18 O -0.516 6.516 19 C -0.063 4.063 20 C -0.185 4.185 21 C 0.005 3.995 22 N -0.369 5.369 23 O 0.095 5.905 24 C -0.041 4.041 25 C 0.112 3.888 26 H 0.069 0.931 27 C 0.124 3.876 28 H 0.251 0.749 29 H 0.098 0.902 30 H 0.021 0.979 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.187 0.813 38 H 0.216 0.784 39 H 0.031 0.969 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -15.004 -8.202 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.015 3.985 11 C 0.008 3.992 12 H 0.131 0.869 13 O -0.287 6.287 14 C -0.020 4.020 15 C -0.047 4.047 16 N -0.322 5.322 17 C 0.292 3.708 18 O -0.391 6.391 19 C -0.103 4.103 20 C -0.189 4.189 21 C -0.174 4.174 22 N -0.073 5.073 23 O 0.031 5.969 24 C -0.122 4.122 25 C 0.008 3.992 26 H 0.087 0.913 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.039 0.961 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.204 0.796 38 H 0.232 0.768 39 H 0.049 0.951 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.253 -15.470 -7.876 17.405 hybrid contribution -0.297 1.275 0.030 1.310 sum -1.551 -14.195 -7.846 16.293 Atomic orbital electron populations 1.69872 1.04843 1.24767 1.57790 1.24783 0.95745 0.97686 1.02400 0.86007 0.78768 0.83581 0.77238 1.20482 1.21791 1.21691 1.19122 0.90585 0.82193 1.42908 0.90312 1.44283 1.01298 1.00253 1.87311 1.22045 0.85377 0.90695 1.00380 1.23080 0.82025 0.96170 0.97890 0.86940 1.86857 1.34701 1.86395 1.20717 1.22190 0.98070 0.98312 0.83466 1.21652 0.85792 1.00394 0.96895 1.46699 1.06554 1.58649 1.20327 1.20486 0.84019 0.79856 0.86468 1.90715 1.28366 1.54936 1.65092 1.19980 0.92638 1.01725 0.95962 1.20731 0.98864 0.95958 1.03361 1.24866 0.90488 1.00323 1.01773 1.73836 1.20819 1.02221 1.10436 1.84800 1.35705 1.22253 1.54092 1.25811 0.85759 0.99276 1.01396 1.21586 0.98741 0.95364 0.83510 0.91273 1.21791 0.93317 0.84044 1.00967 0.93789 0.88377 0.96095 0.87826 0.92271 0.89989 0.91591 0.87506 0.87499 0.79588 0.76767 0.95080 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.18 55.49 0.56 -26.18 16 2 C -0.01 -0.30 5.48 -17.44 -0.10 -0.40 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.21 10.25 -15.06 -0.15 -6.36 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.59 3.39 -171.42 -0.58 -16.17 16 10 C 0.14 3.36 5.26 -3.21 -0.02 3.34 16 11 C 0.07 1.28 3.91 -26.27 -0.10 1.17 16 12 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 13 O -0.37 -6.22 10.25 -34.35 -0.35 -6.58 16 14 C 0.06 0.74 6.73 36.53 0.25 0.99 16 15 C 0.08 0.84 5.85 -5.49 -0.03 0.81 16 16 N -0.59 -8.82 3.09 -169.12 -0.52 -9.34 16 17 C 0.50 7.46 7.04 -10.98 -0.08 7.38 16 18 O -0.52 -9.76 13.05 5.55 0.07 -9.69 16 19 C -0.06 -0.61 4.86 -29.03 -0.14 -0.75 16 20 C -0.18 -2.08 4.82 -104.43 -0.50 -2.58 16 21 C 0.00 0.06 12.16 -17.06 -0.21 -0.15 16 22 N -0.37 -5.02 12.07 30.35 0.37 -4.65 16 23 O 0.10 1.21 11.20 17.16 0.19 1.40 16 24 C -0.04 -0.44 12.26 29.74 0.36 -0.07 16 25 C 0.11 2.04 3.34 -68.67 -0.23 1.81 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 C 0.12 2.78 6.06 -3.42 -0.02 2.76 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.10 2.66 6.25 -51.93 -0.32 2.34 16 30 H 0.02 0.54 6.47 -51.93 -0.34 0.21 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 33 H 0.08 0.68 6.33 -51.93 -0.33 0.35 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.80 7.11 -51.93 -0.37 0.44 16 36 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.22 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.47 5.18 -51.93 -0.27 1.20 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -34.72 321.27 -6.31 -41.04 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.90 Total: 0.22 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.97 Total: 7.94 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.17 Total: -56.35 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.09 Total: -14.86 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.72 -6.31 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083172690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.001 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds