Wall clock time and date at job start Tue Mar 31 2020 04:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47435 * 300.00324 * 3 2 1 6 6 H 1.48506 * 109.47198 * 60.00024 * 3 2 1 7 7 C 1.38805 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.46873 * 125.36263 * 359.97438 * 9 7 2 11 11 C 1.54196 * 106.39624 * 197.86192 * 10 9 7 12 12 H 1.09007 * 109.65010 * 89.90379 * 11 10 9 13 13 O 1.40783 * 110.23323 * 210.33672 * 11 10 9 14 14 C 1.41317 * 118.40090 * 67.69996 * 13 11 10 15 15 C 1.51772 * 111.63624 * 56.77227 * 14 13 11 16 16 N 1.44968 * 111.99523 * 319.67052 * 15 14 13 17 17 C 1.34776 * 117.32232 * 203.54191 * 16 15 14 18 18 O 1.21284 * 119.99857 * 176.30267 * 17 16 15 19 19 C 1.50703 * 120.00392 * 356.30387 * 17 16 15 20 20 C 1.50700 * 109.47267 * 180.02562 * 19 17 16 21 21 C 1.41376 * 128.00716 * 89.99984 * 20 19 17 22 22 N 1.30173 * 106.39364 * 179.73568 * 21 20 19 23 23 O 1.20914 * 111.60892 * 0.02562 * 22 21 20 24 24 C 1.34046 * 111.56540 * 0.02562 * 23 22 21 25 25 C 1.44541 * 125.35220 * 23.25729 * 16 15 14 26 26 H 1.09004 * 109.48711 * 106.13644 * 25 16 15 27 27 C 1.46786 * 125.37003 * 179.97438 * 9 7 2 28 28 H 0.97010 * 120.00267 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.07271 * 317.09819 * 10 9 7 30 30 H 1.08999 * 110.07647 * 78.63051 * 10 9 7 31 31 H 1.09005 * 109.07113 * 177.47460 * 14 13 11 32 32 H 1.09001 * 109.06806 * 296.48094 * 14 13 11 33 33 H 1.09004 * 109.07858 * 198.92758 * 15 14 13 34 34 H 1.08996 * 108.80770 * 80.23012 * 15 14 13 35 35 H 1.09003 * 109.46764 * 59.99737 * 19 17 16 36 36 H 1.09002 * 109.46893 * 300.00315 * 19 17 16 37 37 H 1.07995 * 126.80170 * 359.71752 * 21 20 19 38 38 H 1.07999 * 126.77365 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.82700 * 59.33395 * 27 9 7 40 40 H 1.09003 * 109.90041 * 298.41452 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1367 -2.5253 0.0005 11 6 -0.4384 -3.9678 0.4543 12 1 -0.5379 -3.9976 1.5394 13 8 -1.6321 -4.4244 -0.1362 14 6 -1.6532 -4.6348 -1.5335 15 6 -0.5762 -5.6118 -1.9685 16 7 0.6695 -5.3981 -1.2586 17 6 1.8010 -5.8281 -1.8515 18 8 2.8762 -5.6147 -1.3326 19 6 1.7301 -6.5739 -3.1591 20 6 3.1223 -6.9404 -3.6045 21 6 3.8500 -8.1157 -3.3080 22 7 4.9988 -7.9978 -3.9087 23 8 5.0807 -6.9532 -4.5121 24 6 3.9644 -6.2221 -4.3852 25 6 0.7983 -4.7566 0.0302 26 1 1.0095 -5.5081 0.7910 27 6 1.9374 -3.7223 0.0005 28 1 -0.4851 0.8401 0.0004 29 1 -0.5793 -1.8137 0.6975 30 1 -0.5281 -2.3594 -1.0031 31 1 -2.6289 -5.0274 -1.8198 32 1 -1.4900 -3.6832 -2.0394 33 1 -0.3999 -5.4947 -3.0378 34 1 -0.9243 -6.6267 -1.7768 35 1 1.2616 -5.9413 -3.9131 36 1 1.1401 -7.4811 -3.0284 37 1 3.5186 -8.9465 -2.7029 38 1 3.7735 -5.2525 -4.8209 39 1 2.5669 -3.8404 0.8825 40 1 2.5354 -3.8563 -0.9009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083172690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:17 Heat of formation + Delta-G solvation = 18.557033 kcal Electronic energy + Delta-G solvation = -26315.202290 eV Core-core repulsion = 22520.628487 eV Total energy + Delta-G solvation = -3794.573803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.86041 -42.13347 -39.81415 -37.67468 -36.13640 -35.59879 -34.31758 -33.06553 -31.70305 -30.33355 -29.52348 -28.45403 -26.48964 -24.66359 -23.97577 -23.31215 -22.26646 -21.29108 -19.87704 -19.14591 -18.77476 -18.57197 -18.20300 -18.04312 -16.95936 -16.85691 -16.51989 -16.17359 -15.76167 -15.66588 -15.28577 -15.00534 -14.63601 -14.41378 -14.03598 -13.95305 -13.76648 -13.55006 -13.08358 -13.03814 -12.84973 -12.78124 -12.28665 -12.15115 -12.13391 -12.07329 -11.84497 -11.66071 -11.30822 -10.84075 -10.78106 -10.53987 -10.19054 -9.53441 -8.89941 -7.84997 -5.26595 0.59108 1.26053 1.43557 1.44447 1.55270 1.60654 1.94582 2.40509 2.45551 2.79569 3.27419 3.38370 3.39901 3.65691 3.74299 3.78736 3.82991 3.95991 4.02091 4.12552 4.24851 4.29620 4.40667 4.43360 4.50368 4.61356 4.75703 4.78095 4.83959 4.91997 5.02504 5.09526 5.14329 5.38282 5.48538 5.63649 5.68366 6.19936 6.28923 6.46639 7.06088 7.18964 7.30871 7.72542 8.33435 9.19297 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.004699 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.583426 B = 5956.844148 C = 7361.895922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.979 3.021 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.151 3.849 11 C 0.086 3.914 12 H 0.117 0.883 13 O -0.375 6.375 14 C 0.046 3.954 15 C 0.071 3.929 16 N -0.593 5.593 17 C 0.499 3.501 18 O -0.567 6.567 19 C -0.049 4.049 20 C -0.196 4.196 21 C 0.002 3.998 22 N -0.402 5.402 23 O 0.079 5.921 24 C -0.042 4.042 25 C 0.125 3.875 26 H 0.081 0.919 27 C 0.126 3.874 28 H 0.249 0.751 29 H 0.060 0.940 30 H -0.002 1.002 31 H 0.148 0.852 32 H 0.031 0.969 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.208 0.792 38 H 0.242 0.758 39 H 0.015 0.985 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -16.600 -9.502 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.025 3.975 11 C 0.027 3.973 12 H 0.135 0.865 13 O -0.292 6.292 14 C -0.031 4.031 15 C -0.051 4.051 16 N -0.327 5.327 17 C 0.289 3.711 18 O -0.446 6.446 19 C -0.089 4.089 20 C -0.201 4.201 21 C -0.177 4.177 22 N -0.109 5.109 23 O 0.018 5.982 24 C -0.123 4.123 25 C 0.020 3.980 26 H 0.099 0.901 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.016 0.984 31 H 0.165 0.835 32 H 0.049 0.951 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.225 0.775 38 H 0.258 0.742 39 H 0.033 0.967 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.561 -17.089 -9.212 19.582 hybrid contribution 0.068 1.784 0.404 1.830 sum -2.493 -15.305 -8.808 17.834 Atomic orbital electron populations 1.70110 1.06022 1.25190 1.58146 1.25578 0.96658 1.00715 1.02199 0.85010 0.77899 0.79357 0.77049 1.19667 1.21452 1.21448 1.19380 0.90718 0.83736 1.43343 0.90970 1.44534 1.02324 1.00969 1.87102 1.21776 0.84142 0.93467 0.98085 1.22675 0.83390 0.92929 0.98340 0.86513 1.86859 1.33293 1.85918 1.23104 1.22591 1.01404 0.98050 0.81037 1.22026 0.83216 1.01587 0.98277 1.46853 1.08470 1.58025 1.19368 1.21408 0.82957 0.79144 0.87614 1.90699 1.30183 1.57025 1.66692 1.20065 0.92410 1.03120 0.93261 1.21004 0.99827 0.95749 1.03503 1.25355 0.90003 1.01203 1.01112 1.73827 1.22145 1.03052 1.11879 1.84764 1.36608 1.22423 1.54431 1.26440 0.85057 0.99823 1.00995 1.21212 0.96192 0.94462 0.86149 0.90086 1.21813 0.94693 0.83862 0.99576 0.94157 0.92197 0.98443 0.83485 0.95093 0.86507 0.87616 0.84496 0.83587 0.77475 0.74229 0.96676 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.32 10.18 21.65 0.22 -56.10 16 2 C -0.06 -3.36 5.48 84.86 0.47 -2.89 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.24 -14.15 10.25 84.03 0.86 -13.29 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.62 -33.21 3.39 -696.26 -2.36 -35.56 16 10 C 0.15 7.44 5.26 86.71 0.46 7.90 16 11 C 0.09 3.24 3.91 30.90 0.12 3.36 16 12 H 0.12 4.23 8.14 -2.38 -0.02 4.21 16 13 O -0.37 -11.93 10.25 -145.83 -1.49 -13.42 16 14 C 0.05 1.05 6.73 71.58 0.48 1.53 16 15 C 0.07 1.22 5.85 86.26 0.51 1.73 16 16 N -0.59 -16.16 3.09 -807.36 -2.50 -18.66 16 17 C 0.50 13.46 7.04 87.66 0.62 14.07 16 18 O -0.57 -21.11 13.05 -3.04 -0.04 -21.15 16 19 C -0.05 -0.74 4.86 29.10 0.14 -0.59 16 20 C -0.20 -3.90 4.82 -19.74 -0.10 -4.00 16 21 C 0.00 0.04 12.16 85.71 1.04 1.09 16 22 N -0.40 -10.68 12.07 -59.28 -0.72 -11.40 16 23 O 0.08 1.95 11.20 71.58 0.80 2.75 16 24 C -0.04 -0.83 12.26 67.17 0.82 -0.01 16 25 C 0.13 4.45 3.34 45.55 0.15 4.61 16 26 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 27 C 0.13 5.76 6.06 86.63 0.52 6.28 16 28 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 29 H 0.06 3.40 6.25 -2.39 -0.01 3.39 16 30 H 0.00 -0.12 6.47 -2.39 -0.02 -0.14 16 31 H 0.15 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.03 0.89 6.73 -2.39 -0.02 0.88 16 33 H 0.12 1.25 6.33 -2.38 -0.02 1.23 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.14 1.28 7.11 -2.39 -0.02 1.27 16 36 H 0.15 1.11 8.09 -2.39 -0.02 1.09 16 37 H 0.21 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.24 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 2.42 5.18 -2.39 -0.01 2.40 16 Total: -1.00 -80.68 321.27 3.11 -77.56 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.07 Total: 7.83 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.10 Total: 19.78 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.35 Total: -121.73 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.73 Total: -31.82 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -80.68 3.11 -77.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083172690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.121 kcal (2) G-P(sol) polarization free energy of solvation -80.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds