Wall clock time and date at job start Tue Mar 31 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 119.99655 * 2 1 4 4 N 1.34772 * 120.00198 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99785 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46990 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99660 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.39939 * 119.99758 * 174.73723 * 10 8 7 12 12 C 1.38956 * 120.03570 * 326.32472 * 11 10 8 13 13 C 1.38156 * 120.07081 * 180.02562 * 12 11 10 14 14 C 1.38175 * 120.13567 * 359.72119 * 13 12 11 15 15 C 1.38905 * 120.06692 * 0.55652 * 14 13 12 16 16 O 1.35755 * 120.03289 * 179.72231 * 15 14 13 17 17 C 1.34825 * 117.00011 * 173.82163 * 16 15 14 18 18 H 1.07996 * 119.99945 * 354.59785 * 17 16 15 19 19 C 1.38654 * 119.99933 * 174.60004 * 17 16 15 20 20 N 1.31562 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47088 * 89.99781 * 21 19 17 23 23 H 1.48497 * 109.46655 * 209.99962 * 21 19 17 24 24 H 1.48498 * 109.46856 * 329.99802 * 21 19 17 25 25 C 1.38708 * 120.03895 * 146.35779 * 11 10 8 26 26 H 1.09000 * 109.47116 * 269.99719 * 1 2 3 27 27 H 1.08998 * 109.47327 * 30.00080 * 1 2 3 28 28 H 1.08996 * 109.46701 * 150.00085 * 1 2 3 29 29 H 0.96996 * 120.00137 * 0.02562 * 4 2 1 30 30 H 1.08993 * 109.47817 * 60.00105 * 5 4 2 31 31 H 1.09001 * 109.47054 * 299.99587 * 5 4 2 32 32 H 1.09001 * 109.46888 * 59.99698 * 6 5 4 33 33 H 1.09001 * 109.46731 * 299.99597 * 6 5 4 34 34 H 0.96996 * 120.00079 * 359.97438 * 7 6 5 35 35 H 0.96996 * 119.99805 * 354.72075 * 10 8 7 36 36 H 1.08002 * 119.96782 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.93391 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.96247 * 180.28112 * 14 13 12 39 39 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06084 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1670 0.0000 6 6 4.1560 -2.6096 -0.0014 7 7 5.6210 -2.6095 -0.0002 8 6 6.2949 -3.7767 -0.0016 9 8 5.6870 -4.8297 -0.0035 10 7 7.6427 -3.7767 0.0000 11 6 8.3422 -4.9837 0.1096 12 6 7.8221 -6.0222 0.8724 13 6 8.5124 -7.2140 0.9816 14 6 9.7188 -7.3792 0.3285 15 6 10.2468 -6.3428 -0.4308 16 8 11.4349 -6.5039 -1.0676 17 6 11.8287 -5.5101 -1.8892 18 1 11.1692 -4.6775 -2.0843 19 6 13.0805 -5.5571 -2.4836 20 7 13.8841 -6.5712 -2.2455 21 14 13.6259 -4.1805 -3.6225 22 1 14.3146 -3.1282 -2.8327 23 1 14.5580 -4.7229 -4.6434 24 1 12.4388 -3.5963 -4.2966 25 6 9.5559 -5.1445 -0.5423 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6960 -2.0072 -0.0013 30 1 4.0089 -0.6538 0.8904 31 1 4.0095 -0.6526 -0.8895 32 1 3.7930 -3.1224 -0.8921 33 1 3.7924 -3.1243 0.8880 34 1 6.1059 -1.7694 0.0009 35 1 8.1277 -2.9400 -0.0751 36 1 6.8772 -5.8977 1.3804 37 1 8.1059 -8.0198 1.5746 38 1 10.2539 -8.3136 0.4121 39 1 14.7600 -6.6039 -2.6611 40 1 9.9623 -4.3387 -1.1357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048488607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:46 Heat of formation + Delta-G solvation = -63.537289 kcal Electronic energy + Delta-G solvation = -23599.549947 eV Core-core repulsion = 19801.416268 eV Total energy + Delta-G solvation = -3798.133680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48668 -39.96236 -38.78985 -36.85442 -35.98280 -34.31433 -34.13508 -32.23494 -31.05730 -29.49147 -28.77392 -27.80784 -25.30170 -23.49206 -22.11884 -21.80253 -21.11118 -20.44199 -18.74599 -17.89526 -17.57920 -17.15193 -16.43303 -16.39969 -15.84949 -15.56568 -15.06092 -14.84856 -14.59644 -14.39104 -14.08692 -13.95935 -13.86803 -13.54315 -13.05446 -12.97751 -12.84597 -12.40182 -12.24093 -12.15076 -11.73167 -11.58689 -11.15214 -11.03154 -10.75219 -10.44390 -10.42292 -10.12942 -9.67281 -9.63265 -9.48786 -9.32983 -8.80427 -7.71654 -7.14168 -6.44942 -4.04593 2.03465 2.17997 2.28535 2.41364 3.00899 3.10919 3.12110 3.17029 3.24730 3.95657 4.13314 4.22789 4.40977 4.59784 4.62898 4.74452 4.91052 4.98420 5.10639 5.28288 5.31294 5.43439 5.46756 5.69033 5.83952 6.00082 6.07704 6.15424 6.24825 6.26478 6.52283 6.76140 6.96671 7.00103 7.09991 7.24336 7.33007 7.43089 7.72900 7.82288 7.94449 7.99681 8.54967 9.00496 9.71181 10.73098 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.002379 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.860900 B =11767.533493 C =13106.079263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.546 6.546 4 N -0.728 5.728 5 C 0.106 3.894 6 C 0.130 3.870 7 N -0.746 5.746 8 C 0.706 3.294 9 O -0.569 6.569 10 N -0.680 5.680 11 C 0.198 3.802 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.201 4.201 15 C 0.169 3.831 16 O -0.176 6.176 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.257 4.257 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.405 0.595 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.403 0.597 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.270 0.730 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.919 10.710 4.928 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.423 6.423 4 N -0.382 5.382 5 C -0.018 4.018 6 C 0.005 3.995 7 N -0.403 5.403 8 C 0.406 3.594 9 O -0.445 6.445 10 N -0.327 5.327 11 C 0.104 3.896 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.221 4.221 15 C 0.115 3.885 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.279 4.279 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.240 0.760 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.238 0.762 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.683 10.271 4.855 24.478 hybrid contribution 0.531 1.194 -0.677 1.472 sum -21.152 11.465 4.178 24.419 Atomic orbital electron populations 1.21882 0.91219 1.05106 1.04974 1.20856 0.90755 0.83189 0.75334 1.90751 1.70846 1.31394 1.49307 1.45881 1.06856 1.09284 1.76174 1.21436 0.80561 0.96444 1.03394 1.21200 0.79536 0.95449 1.03322 1.44830 1.06467 1.07599 1.81416 1.15810 0.81704 0.83966 0.77935 1.90959 1.67536 1.29771 1.56205 1.42556 1.04471 1.09293 1.76372 1.17168 0.91536 0.85086 0.95805 1.20550 1.02266 0.94512 1.05262 1.20526 0.93616 0.96340 0.97707 1.20246 0.98216 0.99003 1.04661 1.19066 0.86766 0.91995 0.90718 1.84020 1.29407 1.42910 1.51647 1.21259 1.00940 1.01985 1.22569 0.89285 1.25276 0.94863 0.98196 0.98190 1.70037 1.08766 1.29067 1.41834 0.85732 0.78936 0.79639 0.79224 1.19921 1.20254 1.19295 1.20781 0.98249 1.00256 1.08631 0.88671 0.88734 0.89978 0.76023 0.90637 0.90618 0.90781 0.90789 0.76710 0.76196 0.86271 0.86630 0.86389 0.92035 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.30 36.01 0.37 -0.24 16 2 C 0.51 3.88 7.94 -10.99 -0.09 3.79 16 3 O -0.55 -6.79 17.10 5.56 0.09 -6.69 16 4 N -0.73 -4.13 5.56 -60.29 -0.33 -4.47 16 5 C 0.11 0.70 5.79 -4.04 -0.02 0.68 16 6 C 0.13 1.00 5.79 -4.04 -0.02 0.98 16 7 N -0.75 -7.07 5.56 -65.22 -0.36 -7.43 16 8 C 0.71 10.17 8.30 -86.91 -0.72 9.45 16 9 O -0.57 -10.37 14.05 5.29 0.07 -10.29 16 10 N -0.68 -10.03 5.35 -14.24 -0.08 -10.11 16 11 C 0.20 3.76 6.27 -83.72 -0.52 3.23 16 12 C -0.20 -3.92 8.65 -39.35 -0.34 -4.26 16 13 C -0.06 -1.19 10.03 -39.63 -0.40 -1.58 16 14 C -0.20 -4.32 9.99 -39.36 -0.39 -4.71 16 15 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 16 O -0.18 -5.00 9.76 0.05 0.00 -5.00 16 17 C -0.39 -10.80 9.44 30.89 0.29 -10.51 16 18 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 21 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.26 -5.53 9.04 -39.21 -0.35 -5.89 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.40 1.21 8.47 -40.82 -0.35 0.87 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 2.69 8.49 -40.82 -0.35 2.35 16 35 H 0.40 4.60 8.83 -40.82 -0.36 4.24 16 36 H 0.12 2.24 6.43 -52.49 -0.34 1.90 16 37 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.13 2.72 5.72 -52.48 -0.30 2.42 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -36.98 350.25 -7.06 -44.04 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.91 Total: 8.04 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.56 Total: -4.27 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.02 Total: -46.35 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.17 Total: -21.99 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.98 -7.06 -44.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds