Wall clock time and date at job start Tue Mar 31 2020 04:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 119.99655 * 2 1 4 4 N 1.34772 * 120.00198 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99785 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46990 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99660 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.39939 * 119.99758 * 174.73723 * 10 8 7 12 12 C 1.38956 * 120.03570 * 326.32472 * 11 10 8 13 13 C 1.38156 * 120.07081 * 180.02562 * 12 11 10 14 14 C 1.38175 * 120.13567 * 359.72119 * 13 12 11 15 15 C 1.38905 * 120.06692 * 0.55652 * 14 13 12 16 16 O 1.35755 * 120.03289 * 179.72231 * 15 14 13 17 17 C 1.34825 * 117.00011 * 173.82163 * 16 15 14 18 18 H 1.07996 * 119.99945 * 354.59785 * 17 16 15 19 19 C 1.38654 * 119.99933 * 174.60004 * 17 16 15 20 20 N 1.31562 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47088 * 89.99781 * 21 19 17 23 23 H 1.48497 * 109.46655 * 209.99962 * 21 19 17 24 24 H 1.48498 * 109.46856 * 329.99802 * 21 19 17 25 25 C 1.38708 * 120.03895 * 146.35779 * 11 10 8 26 26 H 1.09000 * 109.47116 * 269.99719 * 1 2 3 27 27 H 1.08998 * 109.47327 * 30.00080 * 1 2 3 28 28 H 1.08996 * 109.46701 * 150.00085 * 1 2 3 29 29 H 0.96996 * 120.00137 * 0.02562 * 4 2 1 30 30 H 1.08993 * 109.47817 * 60.00105 * 5 4 2 31 31 H 1.09001 * 109.47054 * 299.99587 * 5 4 2 32 32 H 1.09001 * 109.46888 * 59.99698 * 6 5 4 33 33 H 1.09001 * 109.46731 * 299.99597 * 6 5 4 34 34 H 0.96996 * 120.00079 * 359.97438 * 7 6 5 35 35 H 0.96996 * 119.99805 * 354.72075 * 10 8 7 36 36 H 1.08002 * 119.96782 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.93391 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.96247 * 180.28112 * 14 13 12 39 39 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06084 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1670 0.0000 6 6 4.1560 -2.6096 -0.0014 7 7 5.6210 -2.6095 -0.0002 8 6 6.2949 -3.7767 -0.0016 9 8 5.6870 -4.8297 -0.0035 10 7 7.6427 -3.7767 0.0000 11 6 8.3422 -4.9837 0.1096 12 6 7.8221 -6.0222 0.8724 13 6 8.5124 -7.2140 0.9816 14 6 9.7188 -7.3792 0.3285 15 6 10.2468 -6.3428 -0.4308 16 8 11.4349 -6.5039 -1.0676 17 6 11.8287 -5.5101 -1.8892 18 1 11.1692 -4.6775 -2.0843 19 6 13.0805 -5.5571 -2.4836 20 7 13.8841 -6.5712 -2.2455 21 14 13.6259 -4.1805 -3.6225 22 1 14.3146 -3.1282 -2.8327 23 1 14.5580 -4.7229 -4.6434 24 1 12.4388 -3.5963 -4.2966 25 6 9.5559 -5.1445 -0.5423 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6960 -2.0072 -0.0013 30 1 4.0089 -0.6538 0.8904 31 1 4.0095 -0.6526 -0.8895 32 1 3.7930 -3.1224 -0.8921 33 1 3.7924 -3.1243 0.8880 34 1 6.1059 -1.7694 0.0009 35 1 8.1277 -2.9400 -0.0751 36 1 6.8772 -5.8977 1.3804 37 1 8.1059 -8.0198 1.5746 38 1 10.2539 -8.3136 0.4121 39 1 14.7600 -6.6039 -2.6611 40 1 9.9623 -4.3387 -1.1357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048488607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:45 Heat of formation + Delta-G solvation = -93.261211 kcal Electronic energy + Delta-G solvation = -23600.838873 eV Core-core repulsion = 19801.416268 eV Total energy + Delta-G solvation = -3799.422606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72193 -40.67456 -40.39847 -38.35280 -36.95952 -35.65309 -35.03983 -34.20258 -31.71081 -30.89610 -30.19567 -28.71901 -27.26230 -24.39796 -23.48191 -23.19437 -22.00660 -21.51824 -20.15589 -19.41408 -19.10050 -17.95499 -17.25011 -17.20177 -17.01739 -16.77692 -16.46312 -16.13576 -15.97926 -15.61985 -15.48768 -15.28237 -15.17540 -14.56827 -14.48936 -14.16543 -13.57569 -13.37375 -13.30467 -13.16705 -12.85343 -12.79200 -12.76059 -12.65289 -12.39554 -12.10812 -11.57039 -11.31671 -11.17920 -11.03597 -10.71553 -10.29928 -10.16112 -9.31608 -8.82725 -8.45123 -6.13591 0.46305 0.72826 1.36283 1.37412 1.45891 1.53780 1.61853 2.02149 2.18667 2.33047 2.86241 3.18457 3.22021 3.51865 3.59631 3.98703 4.01098 4.13848 4.35467 4.37363 4.47217 4.54027 4.64986 4.68519 4.73390 4.82182 4.83172 5.04137 5.10726 5.12522 5.25671 5.34895 5.39832 5.49295 5.69490 5.70776 5.92117 6.03347 6.22570 6.51376 6.89312 6.99379 7.21853 7.40590 7.79542 8.77838 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.002379 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.860900 B =11767.533493 C =13106.079263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.506 3.494 3 O -0.602 6.602 4 N -0.717 5.717 5 C 0.115 3.885 6 C 0.135 3.865 7 N -0.725 5.725 8 C 0.705 3.295 9 O -0.606 6.606 10 N -0.673 5.673 11 C 0.206 3.794 12 C -0.198 4.198 13 C -0.051 4.051 14 C -0.215 4.215 15 C 0.134 3.866 16 O -0.227 6.227 17 C -0.411 4.411 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.254 1.254 25 C -0.261 4.261 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.420 0.580 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.420 0.580 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.272 0.728 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.577 12.198 5.232 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.295 3.705 3 O -0.483 6.483 4 N -0.371 5.371 5 C -0.010 4.010 6 C 0.011 3.989 7 N -0.383 5.383 8 C 0.405 3.595 9 O -0.485 6.485 10 N -0.322 5.322 11 C 0.110 3.890 12 C -0.219 4.219 13 C -0.070 4.070 14 C -0.235 4.235 15 C 0.083 3.917 16 O -0.133 6.133 17 C -0.487 4.487 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.177 1.177 25 C -0.283 4.283 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.258 0.742 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.258 0.742 36 H 0.149 0.851 37 H 0.172 0.828 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.420 11.795 5.186 27.611 hybrid contribution 1.057 0.707 -0.604 1.408 sum -23.362 12.503 4.582 26.891 Atomic orbital electron populations 1.21905 0.87969 1.06282 1.06289 1.21602 0.92346 0.82556 0.74016 1.90727 1.72183 1.33332 1.52066 1.45826 1.06505 1.09750 1.75046 1.21274 0.81262 0.95432 1.03079 1.21251 0.78137 0.96068 1.03468 1.44683 1.07249 1.06839 1.79506 1.15915 0.81281 0.84642 0.77649 1.90934 1.68120 1.31503 1.57964 1.42415 1.04867 1.08682 1.76186 1.17168 0.90716 0.86620 0.94453 1.20867 1.02309 0.94432 1.04301 1.20920 0.92101 0.97336 0.96598 1.20478 0.99353 0.98678 1.05019 1.19596 0.86384 0.93932 0.91787 1.83985 1.31641 1.44156 1.53530 1.21769 1.01648 1.02268 1.23018 0.88086 1.26577 0.94598 1.01031 0.99859 1.70186 1.09508 1.31844 1.44177 0.84592 0.78775 0.76076 0.76803 1.18647 1.19871 1.17735 1.20802 0.99083 0.99474 1.08955 0.87144 0.89094 0.87273 0.74231 0.90867 0.91131 0.90856 0.90403 0.74837 0.74219 0.85055 0.82812 0.86314 0.91875 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.30 71.24 0.73 -0.03 16 2 C 0.51 6.85 7.94 87.66 0.70 7.55 16 3 O -0.60 -14.69 17.10 -3.04 -0.05 -14.74 16 4 N -0.72 -6.51 5.56 -463.06 -2.57 -9.09 16 5 C 0.11 1.28 5.79 86.38 0.50 1.78 16 6 C 0.14 1.73 5.79 86.38 0.50 2.23 16 7 N -0.73 -11.76 5.56 -478.51 -2.66 -14.42 16 8 C 0.70 18.53 8.30 179.05 1.49 20.02 16 9 O -0.61 -20.67 14.05 -4.00 -0.06 -20.72 16 10 N -0.67 -18.35 5.35 -317.22 -1.70 -20.04 16 11 C 0.21 7.51 6.27 38.13 0.24 7.75 16 12 C -0.20 -7.14 8.65 22.42 0.19 -6.95 16 13 C -0.05 -1.82 10.03 22.24 0.22 -1.60 16 14 C -0.22 -9.29 9.99 22.41 0.22 -9.06 16 15 C 0.13 6.66 6.64 22.56 0.15 6.81 16 16 O -0.23 -13.49 9.76 -22.74 -0.22 -13.71 16 17 C -0.41 -23.46 9.44 67.92 0.64 -22.82 16 18 H 0.10 5.25 5.30 -2.91 -0.02 5.23 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 20 N -0.92 -55.83 13.67 21.61 0.30 -55.54 16 21 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 25 C -0.26 -11.24 9.04 22.51 0.20 -11.04 16 26 H 0.11 0.21 8.14 -2.39 -0.02 0.20 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.42 1.28 8.47 -92.71 -0.79 0.50 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.41 4.37 8.49 -92.71 -0.79 3.59 16 35 H 0.42 8.56 8.83 -92.71 -0.82 7.74 16 36 H 0.13 4.52 6.43 -2.91 -0.02 4.51 16 37 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.13 5.43 5.72 -2.91 -0.02 5.42 16 Total: -1.00 -84.25 350.25 0.04 -84.20 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -1.28 Total: 26.17 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 6.26 Total: -6.18 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -6.63 Total: -99.09 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.33 Total: -49.17 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -84.25 0.04 -84.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.056 kcal (2) G-P(sol) polarization free energy of solvation -84.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds