Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99665 * 2 1 4 4 H 1.48505 * 109.47083 * 274.98768 * 3 2 1 5 5 H 1.48502 * 109.47208 * 34.98437 * 3 2 1 6 6 H 1.48499 * 109.47167 * 154.98683 * 3 2 1 7 7 C 1.38808 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99963 * 173.52622 * 7 2 1 9 9 N 1.36937 * 119.99692 * 353.52403 * 7 2 1 10 10 C 1.46880 * 125.58592 * 6.82745 * 9 7 2 11 11 C 1.54052 * 107.70858 * 177.00604 * 10 9 7 12 12 C 1.54562 * 103.67231 * 342.84471 * 11 10 9 13 13 H 1.08999 * 108.79148 * 273.79562 * 12 11 10 14 14 C 1.47659 * 125.57850 * 186.80209 * 9 7 2 15 15 H 1.09000 * 110.56917 * 322.61507 * 14 9 7 16 16 C 1.52932 * 107.98939 * 83.63569 * 14 9 7 17 17 C 1.52933 * 109.79198 * 171.83899 * 16 14 9 18 18 C 1.53056 * 108.49640 * 294.00832 * 17 16 14 19 19 N 1.44192 * 111.47886 * 153.28463 * 12 11 10 20 20 C 1.34776 * 117.75860 * 93.66741 * 19 12 11 21 21 O 1.21284 * 119.99835 * 184.39950 * 20 19 12 22 22 C 1.50699 * 120.00356 * 4.39637 * 20 19 12 23 23 H 1.09000 * 110.21454 * 322.03360 * 22 20 19 24 24 C 1.54486 * 110.24461 * 83.96228 * 22 20 19 25 25 C 1.54630 * 101.76498 * 144.42079 * 24 22 20 26 26 C 1.51279 * 104.19161 * 335.20037 * 25 24 22 27 27 O 1.21287 * 124.93961 * 195.98844 * 26 25 24 28 28 N 1.34419 * 110.12090 * 16.25516 * 26 25 24 29 29 H 0.97000 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.81137 * 296.55765 * 10 9 7 31 31 H 1.09007 * 109.80871 * 57.45414 * 10 9 7 32 32 H 1.08996 * 110.57628 * 101.43375 * 11 10 9 33 33 H 1.09003 * 110.57301 * 224.15695 * 11 10 9 34 34 H 1.09006 * 109.41633 * 51.73883 * 16 14 9 35 35 H 1.08999 * 109.41730 * 291.93977 * 16 14 9 36 36 H 1.09006 * 109.63371 * 174.30629 * 17 16 14 37 37 H 1.08997 * 109.80032 * 53.80798 * 17 16 14 38 38 H 1.08993 * 109.45760 * 293.77362 * 18 17 16 39 39 H 1.09001 * 109.44246 * 173.81906 * 18 17 16 40 40 H 1.08996 * 110.96787 * 26.29319 * 24 22 20 41 41 H 1.09006 * 110.96851 * 262.53566 * 24 22 20 42 42 H 1.09003 * 110.48129 * 216.52441 * 25 24 22 43 43 H 1.08995 * 110.60111 * 93.93689 * 25 24 22 44 44 H 0.96997 * 124.34975 * 180.40470 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4123 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0852 -1.2049 -0.1060 9 7 1.3322 -2.3843 0.1327 10 6 -0.1288 -2.5353 0.1419 11 6 -0.4438 -4.0402 0.2375 12 6 0.8864 -4.7180 -0.1630 13 1 0.9202 -4.8110 -1.2485 14 6 1.9501 -3.7161 0.2901 15 1 2.8501 -3.7952 -0.3197 16 6 2.2866 -3.9088 1.7695 17 6 2.7410 -5.3484 2.0139 18 6 1.5555 -6.2819 1.7575 19 7 1.0116 -6.0264 0.4298 20 6 0.6028 -7.0861 -0.2958 21 8 0.6150 -8.1963 0.1924 22 6 0.1305 -6.8915 -1.7135 23 1 -0.4390 -5.9659 -1.7971 24 6 1.3356 -6.8669 -2.6798 25 6 0.7544 -7.5726 -3.9268 26 6 -0.3627 -8.4332 -3.3790 27 8 -0.8914 -9.3475 -3.9752 28 7 -0.6880 -8.0335 -2.1375 29 1 -0.4850 0.8400 0.0004 30 1 -0.5486 -2.0146 1.0026 31 1 -0.5481 -2.1277 -0.7781 32 1 -0.7203 -4.3097 1.2567 33 1 -1.2386 -4.3101 -0.4580 34 1 1.4026 -3.7004 2.3723 35 1 3.0860 -3.2236 2.0515 36 1 3.0758 -5.4566 3.0456 37 1 3.5571 -5.5982 1.3359 38 1 0.7840 -6.1033 2.5064 39 1 1.8892 -7.3177 1.8200 40 1 2.1756 -7.4277 -2.2701 41 1 1.6285 -5.8429 -2.9122 42 1 1.5143 -8.1918 -4.4035 43 1 0.3613 -6.8414 -4.6330 44 1 -1.3753 -8.4467 -1.5920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049378607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -37.085893 kcal Electronic energy + Delta-G solvation = -26856.264276 eV Core-core repulsion = 23195.110710 eV Total energy + Delta-G solvation = -3661.153567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26222 -39.81757 -38.18532 -36.33411 -35.18953 -33.23784 -32.22796 -31.48715 -29.26570 -28.94313 -27.96000 -24.76917 -24.53987 -22.75318 -21.99485 -20.80451 -20.56178 -20.14640 -18.49146 -17.81913 -17.38912 -16.85502 -15.99223 -15.82158 -15.25626 -14.92346 -14.79633 -14.43288 -13.97528 -13.84826 -13.72399 -13.60807 -13.28393 -13.18116 -12.92999 -12.58421 -12.25678 -12.08987 -11.97371 -11.63628 -11.38080 -11.18363 -11.05709 -10.85913 -10.79052 -10.58042 -10.25621 -10.19900 -10.06209 -10.01529 -9.80963 -9.75280 -9.16511 -8.71158 -8.49842 -7.00233 -5.85691 -3.19823 2.38672 2.42581 2.84218 3.30961 3.31756 3.38651 3.39883 4.08538 4.12842 4.32797 4.41851 4.69004 4.76255 4.93495 5.08174 5.11268 5.15153 5.19655 5.35250 5.38817 5.43711 5.47636 5.53004 5.62320 5.67044 5.76031 5.94869 6.01691 6.04949 6.11688 6.19536 6.31916 6.40260 6.54361 6.63238 6.74255 6.85242 6.89672 7.34388 7.40514 7.48064 7.68805 8.01589 8.10732 8.13165 9.07399 9.67330 10.30960 11.25741 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.004202 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.895376 B = 6661.617273 C = 7490.028951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.157 4.157 12 C 0.123 3.877 13 H 0.088 0.912 14 C 0.163 3.837 15 H 0.057 0.943 16 C -0.131 4.131 17 C -0.131 4.131 18 C 0.116 3.884 19 N -0.579 5.579 20 C 0.503 3.497 21 O -0.538 6.538 22 C 0.108 3.892 23 H 0.111 0.889 24 C -0.122 4.122 25 C -0.154 4.154 26 C 0.524 3.476 27 O -0.536 6.536 28 N -0.708 5.708 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -10.615 -1.374 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.198 4.198 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.197 4.197 12 C 0.018 3.982 13 H 0.106 0.894 14 C 0.054 3.946 15 H 0.075 0.925 16 C -0.172 4.172 17 C -0.170 4.170 18 C -0.006 4.006 19 N -0.310 5.310 20 C 0.288 3.712 21 O -0.415 6.415 22 C -0.001 4.001 23 H 0.128 0.872 24 C -0.160 4.160 25 C -0.194 4.194 26 C 0.310 3.690 27 O -0.413 6.413 28 N -0.363 5.363 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.384 -11.333 -1.497 11.678 hybrid contribution 0.063 1.012 0.508 1.134 sum 2.447 -10.322 -0.989 10.654 Atomic orbital electron populations 1.69956 1.04953 1.25278 1.56252 1.24806 0.95653 0.97665 1.01723 0.86154 0.78770 0.83593 0.77543 1.21599 1.21626 1.20581 1.18988 0.91058 0.82151 1.43792 0.90332 1.44496 1.01298 1.00513 1.85640 1.21071 0.84538 0.87599 1.01515 1.23208 0.95782 0.99740 1.00964 1.21457 0.97761 0.81669 0.97327 0.89422 1.20817 0.93729 0.85940 0.94081 0.92459 1.22126 1.01662 0.93979 0.99399 1.21857 0.97087 0.96416 1.01654 1.21350 0.96007 1.00372 0.82918 1.47092 1.61081 1.06344 1.16521 1.20696 0.78197 0.84723 0.87540 1.90700 1.54485 1.24262 1.72091 1.21758 0.94330 0.91249 0.92756 0.87159 1.22630 0.96226 1.03667 0.93470 1.22371 0.98111 1.00191 0.98736 1.20837 0.83661 0.83153 0.81324 1.90757 1.57455 1.30444 1.62658 1.45952 1.39110 1.33888 1.17365 0.93614 0.93568 0.93287 0.91937 0.91975 0.91934 0.91662 0.91069 0.91738 0.92005 0.89620 0.89322 0.87658 0.87569 0.87100 0.74623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.95 10.34 55.49 0.57 -24.37 16 2 C 0.00 -0.04 5.48 -17.43 -0.10 -0.14 16 3 Si 0.91 20.63 29.56 -169.99 -5.02 15.60 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.23 -5.79 10.26 -15.06 -0.15 -5.94 16 8 H 0.08 1.90 7.84 -52.48 -0.41 1.49 16 9 N -0.59 -13.08 2.94 -163.88 -0.48 -13.56 16 10 C 0.18 3.78 5.39 -3.29 -0.02 3.76 16 11 C -0.16 -2.51 6.37 -25.36 -0.16 -2.67 16 12 C 0.12 1.75 2.39 -68.34 -0.16 1.59 16 13 H 0.09 1.13 4.89 -51.93 -0.25 0.87 16 14 C 0.16 2.78 3.27 -67.34 -0.22 2.56 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.13 -2.08 5.31 -26.80 -0.14 -2.22 16 17 C -0.13 -1.62 6.10 -26.74 -0.16 -1.78 16 18 C 0.12 1.47 6.22 -4.43 -0.03 1.45 16 19 N -0.58 -7.63 2.79 -167.42 -0.47 -8.10 16 20 C 0.50 6.67 6.75 -10.99 -0.07 6.60 16 21 O -0.54 -8.69 15.86 5.55 0.09 -8.60 16 22 C 0.11 1.18 2.93 -68.16 -0.20 0.98 16 23 H 0.11 1.11 6.25 -51.93 -0.32 0.79 16 24 C -0.12 -1.08 6.27 -25.09 -0.16 -1.24 16 25 C -0.15 -1.37 6.86 -26.74 -0.18 -1.55 16 26 C 0.52 6.68 8.43 -10.86 -0.09 6.59 16 27 O -0.54 -8.90 18.03 5.55 0.10 -8.80 16 28 N -0.71 -8.35 5.48 -53.88 -0.30 -8.65 16 29 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.05 1.13 7.42 -51.93 -0.39 0.74 16 31 H 0.05 1.16 7.47 -51.93 -0.39 0.77 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.87 7.73 -51.93 -0.40 0.47 16 34 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.10 7.03 -51.93 -0.37 0.74 16 40 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 41 H 0.10 0.79 7.40 -51.93 -0.38 0.41 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.41 4.83 8.96 -40.82 -0.37 4.47 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -30.91 342.71 -8.82 -39.73 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.62 Total: 3.60 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.85 Total: 7.98 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.67 Total: -54.68 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.19 Total: -17.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.91 -8.82 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049378607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.642 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds