Wall clock time and date at job start Tue Mar 31 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99665 * 2 1 4 4 H 1.48505 * 109.47083 * 274.98768 * 3 2 1 5 5 H 1.48502 * 109.47208 * 34.98437 * 3 2 1 6 6 H 1.48499 * 109.47167 * 154.98683 * 3 2 1 7 7 C 1.38808 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99963 * 173.52622 * 7 2 1 9 9 N 1.36937 * 119.99692 * 353.52403 * 7 2 1 10 10 C 1.46880 * 125.58592 * 6.82745 * 9 7 2 11 11 C 1.54052 * 107.70858 * 177.00604 * 10 9 7 12 12 C 1.54562 * 103.67231 * 342.84471 * 11 10 9 13 13 H 1.08999 * 108.79148 * 273.79562 * 12 11 10 14 14 C 1.47659 * 125.57850 * 186.80209 * 9 7 2 15 15 H 1.09000 * 110.56917 * 322.61507 * 14 9 7 16 16 C 1.52932 * 107.98939 * 83.63569 * 14 9 7 17 17 C 1.52933 * 109.79198 * 171.83899 * 16 14 9 18 18 C 1.53056 * 108.49640 * 294.00832 * 17 16 14 19 19 N 1.44192 * 111.47886 * 153.28463 * 12 11 10 20 20 C 1.34776 * 117.75860 * 93.66741 * 19 12 11 21 21 O 1.21284 * 119.99835 * 184.39950 * 20 19 12 22 22 C 1.50699 * 120.00356 * 4.39637 * 20 19 12 23 23 H 1.09000 * 110.21454 * 322.03360 * 22 20 19 24 24 C 1.54486 * 110.24461 * 83.96228 * 22 20 19 25 25 C 1.54630 * 101.76498 * 144.42079 * 24 22 20 26 26 C 1.51279 * 104.19161 * 335.20037 * 25 24 22 27 27 O 1.21287 * 124.93961 * 195.98844 * 26 25 24 28 28 N 1.34419 * 110.12090 * 16.25516 * 26 25 24 29 29 H 0.97000 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.81137 * 296.55765 * 10 9 7 31 31 H 1.09007 * 109.80871 * 57.45414 * 10 9 7 32 32 H 1.08996 * 110.57628 * 101.43375 * 11 10 9 33 33 H 1.09003 * 110.57301 * 224.15695 * 11 10 9 34 34 H 1.09006 * 109.41633 * 51.73883 * 16 14 9 35 35 H 1.08999 * 109.41730 * 291.93977 * 16 14 9 36 36 H 1.09006 * 109.63371 * 174.30629 * 17 16 14 37 37 H 1.08997 * 109.80032 * 53.80798 * 17 16 14 38 38 H 1.08993 * 109.45760 * 293.77362 * 18 17 16 39 39 H 1.09001 * 109.44246 * 173.81906 * 18 17 16 40 40 H 1.08996 * 110.96787 * 26.29319 * 24 22 20 41 41 H 1.09006 * 110.96851 * 262.53566 * 24 22 20 42 42 H 1.09003 * 110.48129 * 216.52441 * 25 24 22 43 43 H 1.08995 * 110.60111 * 93.93689 * 25 24 22 44 44 H 0.96997 * 124.34975 * 180.40470 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4123 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0852 -1.2049 -0.1060 9 7 1.3322 -2.3843 0.1327 10 6 -0.1288 -2.5353 0.1419 11 6 -0.4438 -4.0402 0.2375 12 6 0.8864 -4.7180 -0.1630 13 1 0.9202 -4.8110 -1.2485 14 6 1.9501 -3.7161 0.2901 15 1 2.8501 -3.7952 -0.3197 16 6 2.2866 -3.9088 1.7695 17 6 2.7410 -5.3484 2.0139 18 6 1.5555 -6.2819 1.7575 19 7 1.0116 -6.0264 0.4298 20 6 0.6028 -7.0861 -0.2958 21 8 0.6150 -8.1963 0.1924 22 6 0.1305 -6.8915 -1.7135 23 1 -0.4390 -5.9659 -1.7971 24 6 1.3356 -6.8669 -2.6798 25 6 0.7544 -7.5726 -3.9268 26 6 -0.3627 -8.4332 -3.3790 27 8 -0.8914 -9.3475 -3.9752 28 7 -0.6880 -8.0335 -2.1375 29 1 -0.4850 0.8400 0.0004 30 1 -0.5486 -2.0146 1.0026 31 1 -0.5481 -2.1277 -0.7781 32 1 -0.7203 -4.3097 1.2567 33 1 -1.2386 -4.3101 -0.4580 34 1 1.4026 -3.7004 2.3723 35 1 3.0860 -3.2236 2.0515 36 1 3.0758 -5.4566 3.0456 37 1 3.5571 -5.5982 1.3359 38 1 0.7840 -6.1033 2.5064 39 1 1.8892 -7.3177 1.8200 40 1 2.1756 -7.4277 -2.2701 41 1 1.6285 -5.8429 -2.9122 42 1 1.5143 -8.1918 -4.4035 43 1 0.3613 -6.8414 -4.6330 44 1 -1.3753 -8.4467 -1.5920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049378607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:53 Heat of formation + Delta-G solvation = -58.081128 kcal Electronic energy + Delta-G solvation = -26857.174698 eV Core-core repulsion = 23195.110710 eV Total energy + Delta-G solvation = -3662.063988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30617 -40.89947 -39.45851 -37.37073 -36.58907 -34.42093 -33.95642 -32.28788 -30.77728 -30.26941 -29.06940 -26.38086 -25.83806 -23.70344 -23.15259 -22.01181 -21.71745 -21.42233 -19.61879 -18.93650 -18.77953 -18.13363 -16.99921 -16.89553 -16.70597 -16.31951 -16.05558 -15.77023 -15.34129 -14.96580 -14.83104 -14.69845 -14.47835 -14.20475 -13.99924 -13.87016 -13.48495 -13.41552 -13.13372 -12.95075 -12.81179 -12.58720 -12.29773 -12.26628 -12.11107 -12.02185 -11.85935 -11.54862 -11.46605 -11.30934 -11.11671 -10.95508 -10.61923 -10.16519 -9.66279 -8.83033 -7.80562 -5.14012 1.34558 1.46295 1.50748 1.52715 1.60312 1.82121 2.36436 2.54286 3.14418 3.30675 3.38223 3.53788 3.68159 3.77455 3.86706 3.96733 4.02906 4.04536 4.15108 4.17479 4.40195 4.45193 4.58680 4.66172 4.71064 4.80637 4.82971 4.86898 4.96136 5.00609 5.04314 5.07992 5.17659 5.37039 5.49953 5.58082 5.60483 5.66191 5.71773 5.83375 5.92041 6.21750 6.29832 6.97259 7.14861 7.16434 7.83519 8.45873 9.29616 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.004202 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.895376 B = 6661.617273 C = 7490.028951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.059 4.059 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.612 5.612 10 C 0.188 3.812 11 C -0.144 4.144 12 C 0.140 3.860 13 H 0.112 0.888 14 C 0.157 3.843 15 H 0.067 0.933 16 C -0.125 4.125 17 C -0.117 4.117 18 C 0.114 3.886 19 N -0.576 5.576 20 C 0.507 3.493 21 O -0.566 6.566 22 C 0.108 3.892 23 H 0.125 0.875 24 C -0.116 4.116 25 C -0.144 4.144 26 C 0.515 3.485 27 O -0.584 6.584 28 N -0.708 5.708 29 H 0.245 0.755 30 H 0.003 0.997 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -11.528 -1.978 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.252 4.252 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.359 4.359 8 H 0.103 0.897 9 N -0.337 5.337 10 C 0.062 3.938 11 C -0.184 4.184 12 C 0.034 3.966 13 H 0.130 0.870 14 C 0.050 3.950 15 H 0.085 0.915 16 C -0.165 4.165 17 C -0.156 4.156 18 C -0.008 4.008 19 N -0.306 5.306 20 C 0.294 3.706 21 O -0.445 6.445 22 C -0.001 4.001 23 H 0.143 0.857 24 C -0.154 4.154 25 C -0.183 4.183 26 C 0.303 3.697 27 O -0.464 6.464 28 N -0.361 5.361 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.061 -12.262 -2.078 13.083 hybrid contribution -0.429 1.262 0.771 1.539 sum 3.632 -11.000 -1.307 11.658 Atomic orbital electron populations 1.70156 1.06183 1.25052 1.58305 1.25496 0.96330 1.00513 1.02877 0.85247 0.77946 0.80115 0.77142 1.21553 1.22851 1.19404 1.19342 0.91548 0.83367 1.41603 0.89719 1.44704 1.01852 1.01710 1.85396 1.20757 0.84194 0.90700 0.98106 1.23048 0.97563 0.95916 1.01839 1.21224 0.95366 0.81418 0.98555 0.87022 1.21059 0.94610 0.84312 0.95054 0.91464 1.21962 1.00333 0.96215 0.97972 1.21760 0.97119 0.93434 1.03265 1.21403 0.96102 1.00602 0.82685 1.47038 1.61100 1.05773 1.16722 1.21028 0.77323 0.84012 0.88193 1.90701 1.55612 1.25288 1.72885 1.21918 0.95325 0.91250 0.91628 0.85740 1.22720 0.95154 1.05032 0.92515 1.22415 0.96868 1.00033 0.99027 1.21533 0.84039 0.82793 0.81292 1.90730 1.59263 1.32618 1.63785 1.46071 1.38889 1.33939 1.17244 0.94610 0.97854 0.96267 0.92010 0.89470 0.93988 0.93073 0.89118 0.90546 0.92146 0.89207 0.89248 0.85406 0.86187 0.84927 0.74977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.15 10.34 21.65 0.22 -52.92 16 2 C -0.06 -3.08 5.48 84.86 0.47 -2.62 16 3 Si 0.97 42.76 29.56 68.60 2.03 44.78 16 4 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.23 -11.41 10.26 84.03 0.86 -10.54 16 8 H 0.09 4.01 7.84 -2.91 -0.02 3.99 16 9 N -0.61 -26.69 2.94 -672.41 -1.97 -28.67 16 10 C 0.19 8.09 5.39 86.66 0.47 8.56 16 11 C -0.14 -4.37 6.37 31.48 0.20 -4.17 16 12 C 0.14 3.59 2.39 45.95 0.11 3.70 16 13 H 0.11 2.40 4.89 -2.39 -0.01 2.39 16 14 C 0.16 5.04 3.27 44.74 0.15 5.19 16 15 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.12 -3.75 5.31 30.55 0.16 -3.59 16 17 C -0.12 -2.55 6.10 30.59 0.19 -2.36 16 18 C 0.11 2.60 6.22 86.54 0.54 3.13 16 19 N -0.58 -13.46 2.79 -801.97 -2.24 -15.70 16 20 C 0.51 12.00 6.75 87.66 0.59 12.60 16 21 O -0.57 -17.02 15.86 -3.04 -0.05 -17.07 16 22 C 0.11 1.99 2.93 44.70 0.13 2.12 16 23 H 0.13 2.01 6.25 -2.39 -0.01 2.00 16 24 C -0.12 -1.59 6.27 31.65 0.20 -1.39 16 25 C -0.14 -2.07 6.86 30.59 0.21 -1.86 16 26 C 0.51 12.25 8.43 87.90 0.74 12.99 16 27 O -0.58 -19.09 18.03 -3.05 -0.06 -19.15 16 28 N -0.71 -15.37 5.48 -442.97 -2.43 -17.79 16 29 H 0.24 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.00 0.16 7.42 -2.39 -0.02 0.15 16 31 H 0.02 0.93 7.47 -2.38 -0.02 0.91 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.23 7.73 -2.39 -0.02 2.21 16 34 H 0.04 1.43 8.02 -2.38 -0.02 1.41 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 2.05 7.03 -2.39 -0.02 2.04 16 40 H 0.09 1.27 7.90 -2.39 -0.02 1.25 16 41 H 0.13 1.25 7.40 -2.38 -0.02 1.23 16 42 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.41 9.16 8.96 -92.71 -0.83 8.33 16 Total: -1.00 -69.37 342.71 0.71 -68.66 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.19 Total: 16.09 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 5.01 Total: 21.76 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -6.41 Total: -115.08 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.10 Total: -36.22 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -69.37 0.71 -68.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049378607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.582 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds