Wall clock time and date at job start Tue Mar 31 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46531 * 2 1 4 4 C 1.50697 * 109.46765 * 240.00333 * 2 1 3 5 5 H 1.08002 * 119.99780 * 245.45003 * 4 2 1 6 6 C 1.37873 * 120.00323 * 65.45764 * 4 2 1 7 7 N 1.31516 * 120.00167 * 9.59432 * 6 4 2 8 8 Si 1.86806 * 120.00122 * 189.59510 * 6 4 2 9 9 H 1.48505 * 109.46772 * 84.99383 * 8 6 4 10 10 H 1.48497 * 109.47137 * 204.99296 * 8 6 4 11 11 H 1.48495 * 109.46980 * 324.99742 * 8 6 4 12 12 N 1.46493 * 109.46949 * 120.00143 * 2 1 3 13 13 C 1.46507 * 120.00165 * 60.00274 * 12 2 1 14 14 S 1.65597 * 120.00132 * 239.99759 * 12 2 1 15 15 O 1.42103 * 106.40549 * 156.46089 * 14 12 2 16 16 O 1.42100 * 106.40162 * 23.54278 * 14 12 2 17 17 N 1.65602 * 107.22200 * 270.00672 * 14 12 2 18 18 C 1.46499 * 120.00099 * 64.99394 * 17 14 12 19 19 C 1.53001 * 109.47043 * 165.00294 * 18 17 14 20 20 O 1.42895 * 110.78544 * 298.20437 * 19 18 17 21 21 C 1.54592 * 110.72153 * 174.95366 * 19 18 17 22 22 C 1.53990 * 105.14116 * 219.68507 * 21 19 18 23 23 N 1.47904 * 107.05674 * 358.77638 * 22 21 19 24 24 C 1.48531 * 105.81822 * 25.33229 * 23 22 21 25 25 H 1.09007 * 109.46903 * 183.28874 * 1 2 3 26 26 H 1.08996 * 109.47104 * 303.28730 * 1 2 3 27 27 H 1.09003 * 109.47600 * 63.29139 * 1 2 3 28 28 H 0.96996 * 120.00131 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46714 * 269.99763 * 13 12 2 30 30 H 1.09001 * 109.46608 * 29.99607 * 13 12 2 31 31 H 1.09003 * 109.47019 * 149.99330 * 13 12 2 32 32 H 0.97001 * 119.99870 * 245.00346 * 17 14 12 33 33 H 1.08997 * 109.46881 * 45.00527 * 18 17 14 34 34 H 1.09002 * 109.47110 * 285.00401 * 18 17 14 35 35 H 0.96705 * 114.00061 * 61.79478 * 20 19 18 36 36 H 1.08994 * 110.31371 * 338.60467 * 21 19 18 37 37 H 1.09005 * 110.31002 * 100.67176 * 21 19 18 38 38 H 1.08993 * 109.92119 * 118.13490 * 22 21 19 39 39 H 1.09003 * 109.91835 * 239.23102 * 22 21 19 40 40 H 1.00900 * 110.99768 * 264.81392 * 23 22 21 41 41 H 1.08997 * 110.66275 * 202.35636 * 24 23 22 42 42 H 1.08997 * 110.66617 * 79.22653 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.2998 1.0359 -2.5936 8 14 2.1748 -1.1784 -4.0102 9 1 1.0221 -2.0607 -4.3236 10 1 2.4217 -0.2620 -5.1523 11 1 3.3828 -2.0083 -3.7713 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 2.8227 -0.5647 3.5259 16 8 2.6903 1.4972 2.1193 17 7 4.5437 -0.1042 1.8180 18 6 5.0139 0.4530 0.5473 19 6 6.5437 0.4451 0.5218 20 8 7.0725 1.2628 1.5675 21 6 7.0702 0.9097 -0.8554 22 6 8.2729 -0.0041 -1.1554 23 7 8.4300 -0.9090 0.0040 24 6 7.0862 -1.0022 0.6298 25 1 -0.3633 -1.0261 0.0590 26 1 -0.3633 0.5640 0.8590 27 1 -0.3634 0.4619 -0.9180 28 1 1.1328 1.4110 -3.4723 29 1 0.7376 -2.1444 1.9992 30 1 1.5295 -2.5968 0.4707 31 1 2.4629 -2.5820 1.9862 32 1 5.1540 -0.6011 2.3850 33 1 4.6541 1.4768 0.4443 34 1 4.6336 -0.1504 -0.2770 35 1 6.8349 0.9665 2.4569 36 1 6.3005 0.7841 -1.6168 37 1 7.3874 1.9514 -0.8074 38 1 8.0816 -0.5857 -2.0571 39 1 9.1727 0.5971 -1.2854 40 1 9.1085 -0.5460 0.6566 41 1 7.1682 -1.3053 1.6736 42 1 6.4510 -1.6935 0.0761 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575911881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:36 Heat of formation + Delta-G solvation = -123.260309 kcal Electronic energy + Delta-G solvation = -25649.363501 eV Core-core repulsion = 21984.083989 eV Total energy + Delta-G solvation = -3665.279513 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.63548 -36.74122 -36.19512 -35.53276 -35.28535 -34.18482 -32.64074 -29.99541 -29.23891 -28.60270 -25.60178 -25.22607 -24.66643 -21.89069 -20.85011 -20.26440 -18.92285 -17.51067 -17.13821 -16.81992 -16.50408 -16.19822 -15.87918 -15.08770 -14.84898 -14.41744 -13.87283 -13.81452 -13.53488 -13.34279 -12.83157 -12.77642 -12.57126 -12.15083 -12.03608 -11.87881 -11.77041 -11.70627 -11.55684 -11.51169 -11.25241 -11.19560 -11.06388 -10.89514 -10.70061 -10.51686 -10.36548 -10.19062 -10.10415 -9.47470 -9.14891 -8.65297 -8.52782 -8.04957 -6.19321 -4.25014 1.19801 3.19385 3.27627 3.28316 3.44951 4.02314 4.09178 4.13215 4.28750 4.57773 4.72070 4.84258 5.01638 5.12379 5.19199 5.29864 5.42523 5.56787 5.74511 5.84728 5.88686 5.91651 5.99686 6.06140 6.12460 6.25420 6.33185 6.56353 6.58304 6.74233 6.76513 7.00710 7.11447 7.21556 7.39427 7.54387 7.55499 7.68730 7.87098 8.16455 8.78415 9.40501 10.87473 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.007418 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.661509 B = 3773.606534 C = 5485.226430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.265 3.735 3 H 0.065 0.935 4 C -0.532 4.532 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.890 3.110 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.784 3.216 15 O -1.000 7.000 16 O -0.979 6.979 17 N -1.132 6.132 18 C 0.104 3.896 19 C 0.092 3.908 20 O -0.551 6.551 21 C -0.140 4.140 22 C 0.044 3.956 23 N -0.670 5.670 24 C 0.019 3.981 25 H 0.035 0.965 26 H 0.017 0.983 27 H 0.075 0.925 28 H 0.265 0.735 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.374 0.626 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.337 0.663 41 H 0.075 0.925 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.844 -3.561 4.788 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.083 0.917 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.793 3.207 15 O -0.984 6.984 16 O -0.962 6.962 17 N -0.891 5.891 18 C -0.023 4.023 19 C 0.048 3.952 20 O -0.357 6.357 21 C -0.179 4.179 22 C -0.086 4.086 23 N -0.296 5.296 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.235 0.765 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.222 0.778 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.152 0.848 41 H 0.094 0.906 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.610 -3.118 4.392 11.017 hybrid contribution 0.091 -0.381 -0.170 0.427 sum 9.702 -3.499 4.222 11.144 Atomic orbital electron populations 1.21982 0.98362 0.99179 1.00370 1.18759 0.91533 0.93239 0.80314 0.91699 1.21308 1.36807 1.08766 0.90213 0.91822 1.24918 0.95089 0.94545 0.98903 1.69958 1.43887 1.13686 1.24273 0.86659 0.78813 0.80128 0.82673 1.20545 1.21271 1.19876 1.57692 1.64384 1.21368 1.39825 1.21181 0.98997 0.81966 1.01798 1.01787 0.72612 0.73694 0.72641 1.93550 1.85934 1.76229 1.42718 1.93591 1.83733 1.32412 1.86472 1.56060 1.30890 1.70752 1.31380 1.21899 0.93426 1.00909 0.86071 1.23010 0.92292 0.91065 0.88830 1.86531 1.76677 1.55350 1.17165 1.22795 0.99370 1.01297 0.94458 1.22738 0.97288 0.93264 0.95306 1.62765 1.07430 1.49201 1.10195 1.23801 0.91180 0.96084 1.00018 0.94626 0.96429 0.90658 0.92517 0.93927 0.90230 0.93155 0.76526 0.89518 0.88574 0.77795 0.88759 0.89984 0.90240 0.91500 0.84764 0.90632 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.12 37.16 0.34 -2.81 16 2 C 0.26 6.09 2.49 -69.09 -0.17 5.92 16 3 H 0.07 1.68 6.85 -51.93 -0.36 1.33 16 4 C -0.53 -12.67 7.68 -34.44 -0.26 -12.93 16 5 H 0.06 1.47 7.16 -52.49 -0.38 1.10 16 6 C 0.07 1.72 5.17 -17.82 -0.09 1.63 16 7 N -0.88 -23.22 12.16 55.43 0.67 -22.55 16 8 Si 0.89 19.38 29.55 -169.99 -5.02 14.36 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 N -0.99 -19.37 3.12 -115.86 -0.36 -19.73 16 13 C 0.11 1.80 9.21 59.85 0.55 2.36 16 14 S 2.78 51.79 6.09 -107.50 -0.66 51.14 16 15 O -1.00 -19.56 17.21 -57.17 -0.98 -20.55 16 16 O -0.98 -21.81 16.17 -57.17 -0.92 -22.73 16 17 N -1.13 -16.35 5.62 -10.61 -0.06 -16.41 16 18 C 0.10 1.59 5.34 -4.04 -0.02 1.57 16 19 C 0.09 1.16 1.04 -88.76 -0.09 1.07 16 20 O -0.55 -6.92 13.11 -35.23 -0.46 -7.38 16 21 C -0.14 -1.74 6.27 -25.38 -0.16 -1.90 16 22 C 0.04 0.48 7.52 -2.75 -0.02 0.46 16 23 N -0.67 -7.48 7.51 -110.09 -0.83 -8.31 16 24 C 0.02 0.22 6.07 -1.90 -0.01 0.21 16 25 H 0.03 0.74 7.56 -51.92 -0.39 0.35 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 1.84 6.84 -51.93 -0.36 1.49 16 28 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.35 6.92 -51.93 -0.36 0.99 16 31 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 32 H 0.40 4.56 7.56 -34.47 -0.26 4.30 16 33 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 34 H 0.10 1.61 7.78 -51.93 -0.40 1.21 16 35 H 0.37 3.66 8.49 45.56 0.39 4.04 16 36 H 0.09 1.23 7.82 -51.93 -0.41 0.83 16 37 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.34 3.39 8.92 -39.29 -0.35 3.04 16 41 H 0.08 0.72 7.81 -51.93 -0.41 0.31 16 42 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -30.30 348.03 -9.07 -39.37 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.75 Total: 11.97 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.06 Total: -4.43 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.57 Total: -66.99 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.37 Total: -50.66 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.66 Total: 51.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.30 -9.07 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.887 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds