Wall clock time and date at job start Tue Mar 31 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46531 * 2 1 4 4 C 1.50697 * 109.46765 * 240.00333 * 2 1 3 5 5 H 1.08002 * 119.99780 * 245.45003 * 4 2 1 6 6 C 1.37873 * 120.00323 * 65.45764 * 4 2 1 7 7 N 1.31516 * 120.00167 * 9.59432 * 6 4 2 8 8 Si 1.86806 * 120.00122 * 189.59510 * 6 4 2 9 9 H 1.48505 * 109.46772 * 84.99383 * 8 6 4 10 10 H 1.48497 * 109.47137 * 204.99296 * 8 6 4 11 11 H 1.48495 * 109.46980 * 324.99742 * 8 6 4 12 12 N 1.46493 * 109.46949 * 120.00143 * 2 1 3 13 13 C 1.46507 * 120.00165 * 60.00274 * 12 2 1 14 14 S 1.65597 * 120.00132 * 239.99759 * 12 2 1 15 15 O 1.42103 * 106.40549 * 156.46089 * 14 12 2 16 16 O 1.42100 * 106.40162 * 23.54278 * 14 12 2 17 17 N 1.65602 * 107.22200 * 270.00672 * 14 12 2 18 18 C 1.46499 * 120.00099 * 64.99394 * 17 14 12 19 19 C 1.53001 * 109.47043 * 165.00294 * 18 17 14 20 20 O 1.42895 * 110.78544 * 298.20437 * 19 18 17 21 21 C 1.54592 * 110.72153 * 174.95366 * 19 18 17 22 22 C 1.53990 * 105.14116 * 219.68507 * 21 19 18 23 23 N 1.47904 * 107.05674 * 358.77638 * 22 21 19 24 24 C 1.48531 * 105.81822 * 25.33229 * 23 22 21 25 25 H 1.09007 * 109.46903 * 183.28874 * 1 2 3 26 26 H 1.08996 * 109.47104 * 303.28730 * 1 2 3 27 27 H 1.09003 * 109.47600 * 63.29139 * 1 2 3 28 28 H 0.96996 * 120.00131 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46714 * 269.99763 * 13 12 2 30 30 H 1.09001 * 109.46608 * 29.99607 * 13 12 2 31 31 H 1.09003 * 109.47019 * 149.99330 * 13 12 2 32 32 H 0.97001 * 119.99870 * 245.00346 * 17 14 12 33 33 H 1.08997 * 109.46881 * 45.00527 * 18 17 14 34 34 H 1.09002 * 109.47110 * 285.00401 * 18 17 14 35 35 H 0.96705 * 114.00061 * 61.79478 * 20 19 18 36 36 H 1.08994 * 110.31371 * 338.60467 * 21 19 18 37 37 H 1.09005 * 110.31002 * 100.67176 * 21 19 18 38 38 H 1.08993 * 109.92119 * 118.13490 * 22 21 19 39 39 H 1.09003 * 109.91835 * 239.23102 * 22 21 19 40 40 H 1.00900 * 110.99768 * 264.81392 * 23 22 21 41 41 H 1.08997 * 110.66275 * 202.35636 * 24 23 22 42 42 H 1.08997 * 110.66617 * 79.22653 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.2998 1.0359 -2.5936 8 14 2.1748 -1.1784 -4.0102 9 1 1.0221 -2.0607 -4.3236 10 1 2.4217 -0.2620 -5.1523 11 1 3.3828 -2.0083 -3.7713 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 2.8227 -0.5647 3.5259 16 8 2.6903 1.4972 2.1193 17 7 4.5437 -0.1042 1.8180 18 6 5.0139 0.4530 0.5473 19 6 6.5437 0.4451 0.5218 20 8 7.0725 1.2628 1.5675 21 6 7.0702 0.9097 -0.8554 22 6 8.2729 -0.0041 -1.1554 23 7 8.4300 -0.9090 0.0040 24 6 7.0862 -1.0022 0.6298 25 1 -0.3633 -1.0261 0.0590 26 1 -0.3633 0.5640 0.8590 27 1 -0.3634 0.4619 -0.9180 28 1 1.1328 1.4110 -3.4723 29 1 0.7376 -2.1444 1.9992 30 1 1.5295 -2.5968 0.4707 31 1 2.4629 -2.5820 1.9862 32 1 5.1540 -0.6011 2.3850 33 1 4.6541 1.4768 0.4443 34 1 4.6336 -0.1504 -0.2770 35 1 6.8349 0.9665 2.4569 36 1 6.3005 0.7841 -1.6168 37 1 7.3874 1.9514 -0.8074 38 1 8.0816 -0.5857 -2.0571 39 1 9.1727 0.5971 -1.2854 40 1 9.1085 -0.5460 0.6566 41 1 7.1682 -1.3053 1.6736 42 1 6.4510 -1.6935 0.0761 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575911881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:33 Heat of formation + Delta-G solvation = -150.811629 kcal Electronic energy + Delta-G solvation = -25650.558216 eV Core-core repulsion = 21984.083989 eV Total energy + Delta-G solvation = -3666.474228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.140 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.64242 -38.35230 -37.86362 -36.91649 -36.54731 -35.38772 -34.46360 -31.02838 -30.97330 -29.59928 -27.22107 -26.99872 -25.82278 -22.84655 -22.60026 -21.30733 -20.36629 -18.88800 -18.62189 -18.28400 -17.99327 -17.35369 -17.13943 -16.66610 -16.23571 -15.74935 -15.19857 -15.04467 -14.85948 -14.76833 -14.46160 -13.94584 -13.74377 -13.68096 -13.46349 -13.33954 -13.27258 -13.17616 -12.93096 -12.88495 -12.79143 -12.61976 -12.60803 -12.22852 -12.17408 -12.17029 -11.84602 -11.72233 -11.26899 -11.18731 -10.53021 -10.44394 -9.67600 -9.55902 -8.09643 -6.20236 -0.31651 1.46717 1.50403 1.56876 1.98332 2.46999 2.60252 3.09461 3.17964 3.21434 3.43180 3.52564 3.81751 3.88732 4.11119 4.23677 4.27446 4.47130 4.60218 4.70791 4.72451 4.81221 4.84128 4.88906 4.94212 4.96473 5.01481 5.09405 5.13390 5.15293 5.27285 5.56890 5.66637 5.67608 5.84301 5.98473 6.15383 6.29377 6.41850 6.67759 6.89318 7.48387 8.97245 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.007418 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.661509 B = 3773.606534 C = 5485.226430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.029 0.971 4 C -0.526 4.526 5 H 0.073 0.927 6 C 0.024 3.976 7 N -0.916 5.916 8 Si 0.948 3.052 9 H -0.279 1.279 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.996 5.996 13 C 0.099 3.901 14 S 2.800 3.200 15 O -1.005 7.005 16 O -1.018 7.018 17 N -1.111 6.111 18 C 0.110 3.890 19 C 0.099 3.901 20 O -0.558 6.558 21 C -0.145 4.145 22 C 0.047 3.953 23 N -0.671 5.671 24 C 0.024 3.976 25 H 0.051 0.949 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.263 0.737 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.421 0.579 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.387 0.613 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.346 0.654 41 H 0.099 0.901 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.396 -5.513 5.306 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.091 0.909 6 C -0.176 4.176 7 N -0.555 5.555 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.219 1.219 11 H -0.186 1.186 12 N -0.838 5.838 13 C -0.046 4.046 14 S 2.809 3.191 15 O -0.989 6.989 16 O -1.002 7.002 17 N -0.874 5.874 18 C -0.017 4.017 19 C 0.055 3.945 20 O -0.366 6.366 21 C -0.184 4.184 22 C -0.082 4.082 23 N -0.298 5.298 24 C -0.106 4.106 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.257 0.743 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.162 0.838 41 H 0.117 0.883 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.174 -5.109 4.954 13.248 hybrid contribution -0.370 0.240 -0.256 0.510 sum 10.804 -4.870 4.697 12.748 Atomic orbital electron populations 1.21894 0.98261 0.99939 0.99331 1.18421 0.91604 0.91801 0.81545 0.95301 1.21528 1.35954 1.08648 0.90391 0.90903 1.25601 0.95243 0.95186 1.01593 1.70088 1.45562 1.15262 1.24587 0.85728 0.78876 0.78665 0.79303 1.20529 1.21885 1.18595 1.57576 1.65066 1.22508 1.38626 1.21407 1.00524 0.80351 1.02356 1.01117 0.73132 0.72640 0.72198 1.93537 1.86389 1.76058 1.42950 1.93546 1.84687 1.35032 1.86936 1.55558 1.29762 1.70699 1.31411 1.21778 0.95565 0.98798 0.85572 1.22909 0.90049 0.92407 0.89145 1.86520 1.76436 1.55686 1.17939 1.22829 0.99795 1.01630 0.94168 1.22723 0.97130 0.93080 0.95301 1.62745 1.07381 1.49232 1.10392 1.23769 0.91044 0.94444 1.01369 0.93006 0.96038 0.92979 0.92825 0.93066 0.90282 0.90522 0.74262 0.92510 0.90040 0.76343 0.90012 0.90312 0.90333 0.89924 0.83801 0.88293 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 9.12 71.98 0.66 -5.48 16 2 C 0.27 12.59 2.49 44.25 0.11 12.70 16 3 H 0.03 1.57 6.85 -2.39 -0.02 1.55 16 4 C -0.53 -24.94 7.68 25.60 0.20 -24.74 16 5 H 0.07 3.27 7.16 -2.91 -0.02 3.25 16 6 C 0.02 1.21 5.17 84.65 0.44 1.65 16 7 N -0.92 -49.48 12.16 21.45 0.26 -49.22 16 8 Si 0.95 39.55 29.55 68.60 2.03 41.58 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 N -1.00 -38.22 3.12 -520.45 -1.62 -39.84 16 13 C 0.10 3.12 9.21 127.77 1.18 4.30 16 14 S 2.80 102.45 6.09 -56.49 -0.34 102.11 16 15 O -1.01 -37.51 17.21 -128.00 -2.20 -39.71 16 16 O -1.02 -46.26 16.17 -128.00 -2.07 -48.33 16 17 N -1.11 -30.75 5.62 -187.49 -1.05 -31.80 16 18 C 0.11 3.36 5.34 86.38 0.46 3.82 16 19 C 0.10 2.38 1.04 -9.59 -0.01 2.37 16 20 O -0.56 -13.02 13.11 -148.98 -1.95 -14.97 16 21 C -0.14 -3.51 6.27 31.47 0.20 -3.32 16 22 C 0.05 0.96 7.52 86.44 0.65 1.61 16 23 N -0.67 -13.22 7.51 -502.22 -3.77 -16.99 16 24 C 0.02 0.48 6.07 86.65 0.53 1.01 16 25 H 0.05 2.13 7.56 -2.38 -0.02 2.11 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 2.60 6.84 -2.39 -0.02 2.59 16 28 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.51 6.92 -2.39 -0.02 2.49 16 31 H 0.08 2.00 7.79 -2.39 -0.02 1.98 16 32 H 0.42 8.48 7.56 -96.74 -0.73 7.75 16 33 H 0.06 2.09 7.75 -2.39 -0.02 2.07 16 34 H 0.08 2.75 7.78 -2.39 -0.02 2.73 16 35 H 0.39 6.64 8.49 -74.05 -0.63 6.01 16 36 H 0.08 2.17 7.82 -2.39 -0.02 2.15 16 37 H 0.08 1.94 8.08 -2.38 -0.02 1.92 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.35 5.90 8.92 -89.69 -0.80 5.10 16 41 H 0.10 1.51 7.81 -2.39 -0.02 1.50 16 42 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 Total: -1.00 -64.63 348.03 -7.44 -72.06 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -1.11 Total: 31.20 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 4.40 Total: -6.07 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -6.19 Total: -137.86 kcal Atomic # 8 Polarization: -96.79 SS G_CDS: -6.23 Total: -103.02 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 102.45 SS G_CDS: -0.34 Total: 102.11 kcal Total: -64.63 -7.44 -72.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.747 kcal (2) G-P(sol) polarization free energy of solvation -64.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds