Wall clock time and date at job start Tue Mar 31 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 N 1.46498 * 109.46726 * 174.99859 * 4 2 1 6 6 C 1.34779 * 120.00066 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99486 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00253 * 179.97438 * 6 5 4 9 9 H 1.08995 * 109.09496 * 39.11276 * 8 6 5 10 10 C 1.53337 * 109.10666 * 279.99871 * 8 6 5 11 11 C 1.50667 * 107.88226 * 282.27126 * 10 8 6 12 12 C 1.33064 * 130.80134 * 152.74492 * 11 10 8 13 13 N 1.34740 * 108.03017 * 179.68211 * 12 11 10 14 14 C 1.30817 * 109.54479 * 0.04442 * 13 12 11 15 15 N 1.35050 * 108.33476 * 0.22595 * 14 13 12 16 16 C 1.34578 * 131.29146 * 179.09740 * 15 14 13 17 17 O 1.21492 * 120.70083 * 9.55057 * 16 15 14 18 18 N 1.34829 * 118.59222 * 189.57420 * 16 15 14 19 19 N 1.46504 * 109.47050 * 239.99291 * 2 1 3 20 20 C 1.36938 * 119.99260 * 85.00442 * 19 2 1 21 21 H 1.08000 * 120.00609 * 0.02562 * 20 19 2 22 22 C 1.38819 * 119.99743 * 179.97438 * 20 19 2 23 23 N 1.31618 * 119.99820 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00166 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47220 * 60.00118 * 24 22 20 26 26 H 1.48496 * 109.47022 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47059 * 299.99917 * 24 22 20 28 28 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 30 30 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 31 31 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 32 32 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 33 33 H 0.96998 * 120.00310 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.77513 * 41.86645 * 10 8 6 35 35 H 1.08996 * 109.77874 * 162.61847 * 10 8 6 36 36 H 1.07996 * 125.98465 * 359.71541 * 12 11 10 37 37 H 1.08003 * 125.83499 * 180.20495 * 14 13 12 38 38 H 0.97006 * 118.55364 * 191.82313 * 18 16 15 39 39 H 0.96998 * 120.00034 * 265.00623 * 19 2 1 40 40 H 0.97001 * 120.00197 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.1730 -1.4284 2.1913 7 8 3.5697 -1.8833 3.1401 8 6 5.6748 -1.5371 2.1307 9 1 6.0828 -0.6138 1.7196 10 6 6.0568 -2.7062 1.2151 11 6 5.8586 -3.9837 1.9888 12 6 5.5814 -5.2174 1.5741 13 7 5.5091 -6.0152 2.6575 14 6 5.7332 -5.3098 3.7362 15 7 5.9520 -4.0289 3.3683 16 6 6.2084 -2.9271 4.0972 17 8 6.4469 -3.0111 5.2856 18 7 6.1947 -1.7280 3.4809 19 7 2.0183 -0.6908 -1.1961 20 6 2.1491 -0.0076 -2.3757 21 1 1.8927 1.0404 -2.4242 22 6 2.6123 -0.6619 -3.5090 23 7 2.9253 -1.9390 -3.4498 24 14 2.7915 0.2700 -5.1179 25 1 3.7467 1.3924 -4.9361 26 1 3.3003 -0.6485 -6.1679 27 1 1.4692 0.8069 -5.5289 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7515 -0.1583 2.1370 32 1 1.6052 -1.7198 1.2953 33 1 3.9823 -0.4629 0.4317 34 1 5.4180 -2.7070 0.3319 35 1 7.1006 -2.6139 0.9151 36 1 5.4398 -5.5253 0.5487 37 1 5.7415 -5.6873 4.7481 38 1 6.5458 -0.9585 3.9558 39 1 2.2489 -1.6319 -1.1525 40 1 3.2486 -2.3963 -4.2418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752889948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:50 Heat of formation + Delta-G solvation = 19.639074 kcal Electronic energy + Delta-G solvation = -25693.764827 eV Core-core repulsion = 21931.530697 eV Total energy + Delta-G solvation = -3762.234131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.15832 -40.10931 -39.16322 -36.79300 -35.99726 -33.78314 -33.17472 -32.22004 -31.76665 -29.24813 -28.67996 -26.18205 -24.62349 -24.09719 -23.62437 -21.56930 -20.90252 -20.31718 -19.15542 -18.49884 -17.52462 -17.44616 -17.00828 -16.23968 -16.13551 -15.48580 -15.10585 -14.84171 -14.61653 -14.27053 -14.09107 -13.80241 -13.67478 -13.22398 -12.89145 -12.77450 -12.56151 -12.31952 -12.20583 -11.98179 -11.47918 -11.04863 -10.94841 -10.85635 -10.50608 -10.47726 -10.30989 -10.27957 -10.14346 -9.82136 -9.37009 -9.08448 -8.86863 -8.68132 -7.16000 -5.92145 -3.22887 1.06115 2.03878 2.58550 2.72057 2.90142 3.09051 3.32674 3.38169 3.39580 3.40088 4.21119 4.28186 4.45014 4.52587 4.60350 4.74470 4.86230 5.19664 5.27671 5.33765 5.36314 5.45604 5.46211 5.77154 5.81020 5.96337 6.07401 6.14903 6.19650 6.38183 6.45223 6.53069 6.59687 6.67591 6.91946 6.94437 7.55671 7.59182 7.67122 7.84661 8.24796 8.27468 9.37473 9.90708 10.26884 11.29427 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003934 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.454444 B = 7115.787929 C = 7829.757334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.054 0.946 4 C 0.116 3.884 5 N -0.703 5.703 6 C 0.491 3.509 7 O -0.537 6.537 8 C 0.121 3.879 9 H 0.130 0.870 10 C -0.054 4.054 11 C -0.031 4.031 12 C 0.013 3.987 13 N -0.482 5.482 14 C 0.250 3.750 15 N -0.455 5.455 16 C 0.738 3.262 17 O -0.536 6.536 18 N -0.704 5.704 19 N -0.723 5.723 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.183 0.817 37 H 0.218 0.782 38 H 0.423 0.577 39 H 0.385 0.615 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 1.317 10.066 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.072 0.928 4 C -0.009 4.009 5 N -0.356 5.356 6 C 0.274 3.726 7 O -0.414 6.414 8 C 0.011 3.989 9 H 0.148 0.852 10 C -0.093 4.093 11 C -0.137 4.137 12 C -0.129 4.129 13 N -0.199 5.199 14 C -0.033 4.033 15 N -0.160 5.160 16 C 0.439 3.561 17 O -0.408 6.408 18 N -0.359 5.359 19 N -0.366 5.366 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.204 4.204 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.249 0.751 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.201 0.799 37 H 0.234 0.766 38 H 0.262 0.738 39 H 0.219 0.781 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.172 0.157 11.214 13.312 hybrid contribution 0.414 1.526 -1.200 1.985 sum 7.586 1.684 10.014 12.676 Atomic orbital electron populations 1.22366 0.98247 1.01351 1.00432 1.20506 0.92753 0.95706 0.86054 0.92789 1.21733 0.78992 1.01314 0.98850 1.45938 1.08550 1.58157 1.22912 1.20822 0.89663 0.78828 0.83287 1.90728 1.69639 1.47472 1.33583 1.21084 0.92620 1.02058 0.83146 0.85195 1.20597 1.05076 0.86401 0.97236 1.21358 1.10990 0.98822 0.82564 1.21965 1.03182 0.88678 0.99030 1.70775 1.19218 1.32376 0.97537 1.25301 0.99404 0.77867 1.00686 1.43769 1.54817 1.09243 1.08176 1.15540 0.76299 0.80180 0.84070 1.91005 1.52409 1.85283 1.12088 1.44690 1.65228 1.09050 1.16975 1.42463 1.78120 1.10791 1.05214 1.19166 1.37289 0.93879 0.87399 0.91191 1.24721 1.01848 0.95875 0.97920 1.69639 1.50309 1.08549 1.29165 0.86309 0.77826 0.78602 0.83626 1.21248 1.21686 1.21309 0.93177 0.94214 0.92233 0.91772 0.91721 0.75138 0.85649 0.87576 0.79945 0.76588 0.73789 0.78083 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.16 2.71 3.05 -67.93 -0.21 2.51 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C 0.12 1.77 5.23 -4.04 -0.02 1.75 16 5 N -0.70 -9.67 5.39 -60.29 -0.32 -9.99 16 6 C 0.49 6.82 6.71 -10.99 -0.07 6.74 16 7 O -0.54 -9.72 16.04 5.55 0.09 -9.63 16 8 C 0.12 1.19 3.54 -69.22 -0.25 0.94 16 9 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.05 -0.53 5.98 -27.72 -0.17 -0.70 16 11 C -0.03 -0.40 6.39 -81.47 -0.52 -0.92 16 12 C 0.01 0.18 11.83 -18.07 -0.21 -0.04 16 13 N -0.48 -7.08 11.27 -14.82 -0.17 -7.25 16 14 C 0.25 3.40 12.54 -90.10 -1.13 2.27 16 15 N -0.45 -6.34 2.85 -64.88 -0.19 -6.53 16 16 C 0.74 10.41 7.91 -87.05 -0.69 9.72 16 17 O -0.54 -8.78 17.75 5.37 0.10 -8.68 16 18 N -0.70 -7.59 4.84 -60.07 -0.29 -7.88 16 19 N -0.72 -15.40 4.56 -53.42 -0.24 -15.65 16 20 C -0.25 -5.98 9.93 -15.06 -0.15 -6.13 16 21 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -25.14 13.06 55.49 0.72 -24.42 16 24 Si 0.91 20.43 29.55 -169.99 -5.02 15.40 16 25 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.41 5.43 8.14 -40.82 -0.33 5.10 16 34 H 0.13 1.29 8.01 -51.93 -0.42 0.87 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.18 2.11 8.06 -52.49 -0.42 1.68 16 37 H 0.22 2.28 8.06 -52.48 -0.42 1.86 16 38 H 0.42 3.52 8.90 -40.82 -0.36 3.16 16 39 H 0.39 8.92 7.80 -40.82 -0.32 8.60 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -33.13 344.91 -8.49 -41.62 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -5.20 Total: 14.24 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -3.16 Total: 13.57 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -0.49 Total: -71.72 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.18 Total: -18.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.13 -8.49 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752889948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.259 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds