Wall clock time and date at job start Tue Mar 31 2020 04:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 N 1.46498 * 109.46726 * 174.99859 * 4 2 1 6 6 C 1.34779 * 120.00066 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99486 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00253 * 179.97438 * 6 5 4 9 9 H 1.08995 * 109.09496 * 39.11276 * 8 6 5 10 10 C 1.53337 * 109.10666 * 279.99871 * 8 6 5 11 11 C 1.50667 * 107.88226 * 282.27126 * 10 8 6 12 12 C 1.33064 * 130.80134 * 152.74492 * 11 10 8 13 13 N 1.34740 * 108.03017 * 179.68211 * 12 11 10 14 14 C 1.30817 * 109.54479 * 0.04442 * 13 12 11 15 15 N 1.35050 * 108.33476 * 0.22595 * 14 13 12 16 16 C 1.34578 * 131.29146 * 179.09740 * 15 14 13 17 17 O 1.21492 * 120.70083 * 9.55057 * 16 15 14 18 18 N 1.34829 * 118.59222 * 189.57420 * 16 15 14 19 19 N 1.46504 * 109.47050 * 239.99291 * 2 1 3 20 20 C 1.36938 * 119.99260 * 85.00442 * 19 2 1 21 21 H 1.08000 * 120.00609 * 0.02562 * 20 19 2 22 22 C 1.38819 * 119.99743 * 179.97438 * 20 19 2 23 23 N 1.31618 * 119.99820 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00166 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47220 * 60.00118 * 24 22 20 26 26 H 1.48496 * 109.47022 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47059 * 299.99917 * 24 22 20 28 28 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 30 30 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 31 31 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 32 32 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 33 33 H 0.96998 * 120.00310 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.77513 * 41.86645 * 10 8 6 35 35 H 1.08996 * 109.77874 * 162.61847 * 10 8 6 36 36 H 1.07996 * 125.98465 * 359.71541 * 12 11 10 37 37 H 1.08003 * 125.83499 * 180.20495 * 14 13 12 38 38 H 0.97006 * 118.55364 * 191.82313 * 18 16 15 39 39 H 0.96998 * 120.00034 * 265.00623 * 19 2 1 40 40 H 0.97001 * 120.00197 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.1730 -1.4284 2.1913 7 8 3.5697 -1.8833 3.1401 8 6 5.6748 -1.5371 2.1307 9 1 6.0828 -0.6138 1.7196 10 6 6.0568 -2.7062 1.2151 11 6 5.8586 -3.9837 1.9888 12 6 5.5814 -5.2174 1.5741 13 7 5.5091 -6.0152 2.6575 14 6 5.7332 -5.3098 3.7362 15 7 5.9520 -4.0289 3.3683 16 6 6.2084 -2.9271 4.0972 17 8 6.4469 -3.0111 5.2856 18 7 6.1947 -1.7280 3.4809 19 7 2.0183 -0.6908 -1.1961 20 6 2.1491 -0.0076 -2.3757 21 1 1.8927 1.0404 -2.4242 22 6 2.6123 -0.6619 -3.5090 23 7 2.9253 -1.9390 -3.4498 24 14 2.7915 0.2700 -5.1179 25 1 3.7467 1.3924 -4.9361 26 1 3.3003 -0.6485 -6.1679 27 1 1.4692 0.8069 -5.5289 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7515 -0.1583 2.1370 32 1 1.6052 -1.7198 1.2953 33 1 3.9823 -0.4629 0.4317 34 1 5.4180 -2.7070 0.3319 35 1 7.1006 -2.6139 0.9151 36 1 5.4398 -5.5253 0.5487 37 1 5.7415 -5.6873 4.7481 38 1 6.5458 -0.9585 3.9558 39 1 2.2489 -1.6319 -1.1525 40 1 3.2486 -2.3963 -4.2418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752889948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:46 Heat of formation + Delta-G solvation = -4.529565 kcal Electronic energy + Delta-G solvation = -25694.812858 eV Core-core repulsion = 21931.530697 eV Total energy + Delta-G solvation = -3763.282162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.143 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.16882 -41.18958 -40.27861 -38.09320 -37.16127 -35.22805 -34.24178 -33.66000 -32.86656 -30.65170 -29.94298 -27.36818 -25.78874 -25.45862 -24.93101 -22.58900 -21.99431 -21.71227 -20.17170 -19.60601 -19.15495 -18.45595 -18.07619 -17.34281 -17.28609 -16.85916 -16.23827 -16.15824 -15.65771 -15.57669 -15.43139 -15.04883 -14.76872 -14.67044 -13.91180 -13.84296 -13.73020 -13.63025 -13.47123 -13.17346 -13.03601 -12.70528 -12.47403 -12.18207 -12.10740 -11.68441 -11.61520 -11.58328 -11.37016 -11.35979 -10.91017 -10.39163 -10.06856 -9.67808 -8.96212 -7.84983 -5.13503 0.02997 1.07172 1.50814 1.55730 1.58198 1.62773 1.69878 1.88069 2.10424 2.36699 2.63406 3.35921 3.42613 3.48851 3.59244 3.66489 3.80200 3.92627 4.01676 4.07016 4.25951 4.41340 4.48305 4.65530 4.67441 4.74471 4.83691 4.86897 5.08095 5.27265 5.27984 5.39250 5.47986 5.56925 5.59676 5.63829 5.93768 6.35323 6.52176 6.63368 6.83927 7.17897 7.44118 8.14615 8.40344 9.36849 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003934 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.454444 B = 7115.787929 C = 7829.757334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 H 0.065 0.935 4 C 0.126 3.874 5 N -0.697 5.697 6 C 0.490 3.510 7 O -0.583 6.583 8 C 0.127 3.873 9 H 0.183 0.817 10 C -0.051 4.051 11 C -0.032 4.032 12 C -0.010 4.010 13 N -0.504 5.504 14 C 0.237 3.763 15 N -0.462 5.462 16 C 0.731 3.269 17 O -0.566 6.566 18 N -0.689 5.689 19 N -0.729 5.729 20 C -0.235 4.235 21 H 0.076 0.924 22 C -0.061 4.061 23 N -0.961 5.961 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.303 1.303 27 H -0.289 1.289 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.417 0.583 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.195 0.805 37 H 0.237 0.763 38 H 0.436 0.564 39 H 0.374 0.626 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 3.386 9.911 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 H 0.083 0.917 4 C 0.001 3.999 5 N -0.349 5.349 6 C 0.274 3.726 7 O -0.462 6.462 8 C 0.019 3.981 9 H 0.200 0.800 10 C -0.090 4.090 11 C -0.138 4.138 12 C -0.151 4.151 13 N -0.222 5.222 14 C -0.045 4.045 15 N -0.167 5.167 16 C 0.433 3.567 17 O -0.441 6.441 18 N -0.345 5.345 19 N -0.370 5.370 20 C -0.367 4.367 21 H 0.094 0.906 22 C -0.254 4.254 23 N -0.611 5.611 24 Si 0.791 3.209 25 H -0.201 1.201 26 H -0.230 1.230 27 H -0.216 1.216 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.255 0.745 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.212 0.788 37 H 0.253 0.747 38 H 0.277 0.723 39 H 0.207 0.793 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.930 2.297 11.052 13.795 hybrid contribution 0.087 0.910 -1.103 1.433 sum 8.017 3.208 9.949 13.173 Atomic orbital electron populations 1.22273 0.97458 1.00914 1.01236 1.20644 0.93145 0.95881 0.85033 0.91673 1.21516 0.80026 1.00059 0.98337 1.45865 1.07899 1.57989 1.23124 1.21530 0.91357 0.77463 0.82219 1.90720 1.71006 1.49223 1.35301 1.21300 0.89661 1.04422 0.82746 0.80003 1.20779 1.07204 0.84578 0.96457 1.21862 1.09751 0.99824 0.82378 1.22295 1.04080 0.89230 0.99480 1.70741 1.19893 1.33268 0.98259 1.25773 0.99272 0.78080 1.01389 1.43878 1.54839 1.09342 1.08654 1.15775 0.76124 0.80957 0.83880 1.90978 1.53931 1.85820 1.13348 1.44658 1.64089 1.08400 1.17349 1.42558 1.78255 1.10317 1.05847 1.19480 1.34947 0.94118 0.88166 0.90599 1.25314 1.03062 0.96542 1.00520 1.69771 1.52291 1.09819 1.29235 0.85428 0.77540 0.77540 0.80427 1.20058 1.22954 1.21629 0.94267 0.91154 0.93646 0.90481 0.93776 0.74481 0.85869 0.83977 0.78772 0.74729 0.72265 0.79344 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.49 71.98 0.68 -4.18 16 2 C 0.16 5.17 3.05 44.99 0.14 5.31 16 3 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 4 C 0.13 3.64 5.23 86.38 0.45 4.09 16 5 N -0.70 -17.67 5.39 -463.05 -2.49 -20.17 16 6 C 0.49 12.59 6.71 87.66 0.59 13.18 16 7 O -0.58 -20.53 16.04 -3.05 -0.05 -20.58 16 8 C 0.13 2.10 3.54 44.46 0.16 2.25 16 9 H 0.18 1.19 8.14 -2.39 -0.02 1.17 16 10 C -0.05 -0.87 5.98 29.95 0.18 -0.69 16 11 C -0.03 -0.78 6.39 40.36 0.26 -0.52 16 12 C -0.01 -0.27 11.83 83.09 0.98 0.71 16 13 N -0.50 -14.99 11.27 -200.81 -2.26 -17.25 16 14 C 0.24 6.50 12.54 180.17 2.26 8.75 16 15 N -0.46 -12.61 2.85 -477.58 -1.36 -13.97 16 16 C 0.73 19.88 7.91 179.10 1.42 21.30 16 17 O -0.57 -18.35 17.75 -3.69 -0.07 -18.41 16 18 N -0.69 -13.20 4.84 -462.23 -2.24 -15.43 16 19 N -0.73 -30.14 4.56 -322.93 -1.47 -31.62 16 20 C -0.24 -11.08 9.93 84.04 0.83 -10.24 16 21 H 0.08 3.44 7.83 -2.91 -0.02 3.42 16 22 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 23 N -0.96 -51.94 13.06 21.65 0.28 -51.66 16 24 Si 0.96 41.36 29.55 68.60 2.03 43.39 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 27 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 9.86 8.14 -92.71 -0.75 9.10 16 34 H 0.12 2.24 8.01 -2.39 -0.02 2.22 16 35 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.24 5.05 8.06 -2.91 -0.02 5.03 16 38 H 0.44 6.04 8.90 -92.70 -0.83 5.21 16 39 H 0.37 17.16 7.80 -92.71 -0.72 16.44 16 40 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -71.95 344.91 -0.42 -72.37 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.20 Total: 35.97 kcal Atomic # 6 Polarization: 28.94 SS G_CDS: 8.41 Total: 37.36 kcal Atomic # 7 Polarization: -140.55 SS G_CDS: -9.55 Total: -150.09 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.11 Total: -38.99 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -71.95 -0.42 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752889948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.843 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds