Wall clock time and date at job start Tue Mar 31 2020 04:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.33868 * 124.19509 * 2 1 4 4 O 1.21539 * 123.78919 * 0.02562 * 3 2 1 5 5 N 1.34694 * 112.41844 * 179.86661 * 3 2 1 6 6 C 1.46810 * 106.39389 * 0.37903 * 5 3 2 7 7 C 1.52541 * 110.54449 * 118.45361 * 6 5 3 8 8 C 1.53150 * 109.31659 * 66.37464 * 7 6 5 9 9 N 1.46847 * 109.45628 * 58.26374 * 8 7 6 10 10 C 1.46902 * 110.99860 * 173.65451 * 9 8 7 11 11 C 1.52996 * 109.47201 * 288.20003 * 10 9 8 12 12 C 1.50702 * 115.54778 * 306.36096 * 11 10 9 13 13 H 1.07999 * 119.99866 * 144.25059 * 12 11 10 14 14 C 1.37878 * 120.00169 * 324.25483 * 12 11 10 15 15 N 1.31511 * 119.99842 * 351.18414 * 14 12 11 16 16 Si 1.86803 * 119.99996 * 171.18549 * 14 12 11 17 17 H 1.48497 * 109.46903 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47145 * 119.99798 * 16 14 12 19 19 H 1.48501 * 109.46987 * 240.00071 * 16 14 12 20 20 C 1.53002 * 117.49664 * 160.69776 * 11 10 9 21 21 C 1.52995 * 117.50308 * 92.03554 * 11 10 9 22 22 C 1.46859 * 111.31348 * 297.83654 * 9 8 7 23 23 C 1.52537 * 110.54352 * 241.10723 * 6 5 3 24 24 C 1.34931 * 124.19533 * 180.30224 * 2 1 3 25 25 O 1.21233 * 127.26661 * 359.96002 * 24 2 1 26 26 H 1.08998 * 109.47227 * 269.69833 * 1 2 3 27 27 H 1.09002 * 109.47358 * 149.69918 * 1 2 3 28 28 H 1.09003 * 109.46911 * 29.70249 * 1 2 3 29 29 H 0.97000 * 126.80089 * 180.15889 * 5 3 2 30 30 H 1.08994 * 109.49856 * 186.32212 * 7 6 5 31 31 H 1.09003 * 109.50059 * 306.42127 * 7 6 5 32 32 H 1.09004 * 109.46952 * 298.26561 * 8 7 6 33 33 H 1.08999 * 109.47590 * 178.26162 * 8 7 6 34 34 H 1.09007 * 109.46941 * 48.19841 * 10 9 8 35 35 H 1.09000 * 109.47068 * 168.19243 * 10 9 8 36 36 H 0.96998 * 119.99972 * 185.01079 * 15 14 12 37 37 H 1.08996 * 117.50162 * 359.97438 * 20 11 10 38 38 H 1.09004 * 117.50022 * 145.02125 * 20 11 10 39 39 H 1.08994 * 117.50158 * 214.98255 * 21 11 10 40 40 H 1.09004 * 117.49411 * 359.97438 * 21 11 10 41 41 H 1.09009 * 109.47355 * 302.17792 * 22 9 8 42 42 H 1.08990 * 109.47844 * 182.16863 * 22 9 8 43 43 H 1.09001 * 109.50182 * 53.58959 * 23 6 5 44 44 H 1.09001 * 109.49990 * 173.64897 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2174 1.1073 0.0000 4 8 1.7618 2.2340 0.0005 5 7 3.5360 0.8324 0.0029 6 6 3.6542 -0.6310 -0.0043 7 6 4.3797 -1.1033 -1.2602 8 6 5.8325 -0.6204 -1.2179 9 7 6.4848 -1.1376 -0.0082 10 6 7.9193 -0.8213 -0.0075 11 6 8.6325 -1.6846 -1.0500 12 6 8.4035 -3.1693 -0.9309 13 1 8.3352 -3.7782 -1.8203 14 6 8.2811 -3.7504 0.3134 15 7 8.5351 -3.0473 1.3953 16 14 7.7546 -5.5365 0.4624 17 1 7.5302 -6.1011 -0.8926 18 1 8.8183 -6.3103 1.1516 19 1 6.4962 -5.6178 1.2466 20 6 10.0077 -1.2183 -1.5320 21 6 8.7932 -1.1051 -2.4568 22 6 5.8337 -0.6320 1.2072 23 6 4.3811 -1.1154 1.2462 24 6 2.2234 -1.1160 -0.0059 25 8 1.8379 -2.2654 -0.0113 26 1 -0.3633 -0.0054 1.0276 27 1 -0.3634 -0.8873 -0.5185 28 1 -0.3633 0.8927 -0.5092 29 1 4.2633 1.4741 0.0056 30 1 4.3596 -2.1921 -1.3043 31 1 3.8858 -0.6938 -2.1415 32 1 5.8528 0.4694 -1.2041 33 1 6.3617 -0.9825 -2.0993 34 1 8.0592 0.2321 -0.2508 35 1 8.3357 -1.0246 0.9791 36 1 8.5199 -3.4745 2.2660 37 1 10.4042 -0.2963 -1.1068 38 1 10.7467 -1.9855 -1.7636 39 1 8.7335 -1.7977 -3.2963 40 1 8.3903 -0.1089 -2.6397 41 1 5.8539 0.4579 1.2037 42 1 6.3638 -1.0024 2.0844 43 1 3.8880 -0.7147 2.1319 44 1 4.3605 -2.2047 1.2800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602797607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:23 Heat of formation + Delta-G solvation = -0.079004 kcal Electronic energy + Delta-G solvation = -27098.342960 eV Core-core repulsion = 23438.794132 eV Total energy + Delta-G solvation = -3659.548827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67508 -38.80784 -38.44151 -36.67691 -35.69711 -34.32662 -32.03822 -31.06928 -30.70094 -28.23480 -26.24442 -25.29343 -23.72624 -23.09639 -22.33678 -21.14099 -20.61055 -19.52176 -18.92940 -17.93584 -16.88187 -16.50916 -16.12378 -15.61089 -15.46930 -15.06017 -14.72309 -14.49805 -14.09487 -14.05647 -13.96075 -13.59733 -13.13929 -12.92954 -12.85692 -12.77833 -12.17116 -12.04484 -11.39411 -11.19471 -11.02431 -10.99565 -10.89993 -10.77180 -10.75531 -10.48935 -10.42103 -9.99313 -9.93093 -9.91892 -9.39642 -9.28739 -8.97408 -8.64227 -8.00505 -7.30515 -5.91597 -3.93252 1.57691 2.15973 2.92152 3.08689 3.34264 3.43839 3.47359 3.95845 4.47137 4.53499 4.58484 4.73039 4.88181 5.10303 5.14143 5.35204 5.36681 5.41344 5.49188 5.56559 5.60891 5.66301 5.75705 5.80893 5.84277 6.10640 6.24031 6.27501 6.36272 6.39352 6.45644 6.54555 6.66290 6.71497 6.74863 6.93586 6.95403 7.13582 7.31825 7.34138 7.53247 7.97932 8.05613 8.08073 8.12176 8.53580 9.00373 9.67331 11.10939 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.004911 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.706712 B = 5700.390640 C = 6530.404430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.584 5.584 3 C 0.703 3.297 4 O -0.553 6.553 5 N -0.713 5.713 6 C 0.124 3.876 7 C -0.107 4.107 8 C 0.061 3.939 9 N -0.497 5.497 10 C 0.105 3.895 11 C 0.068 3.932 12 C -0.470 4.470 13 H 0.054 0.946 14 C 0.091 3.909 15 N -0.879 5.879 16 Si 0.887 3.113 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.282 1.282 20 C -0.207 4.207 21 C -0.220 4.220 22 C 0.067 3.933 23 C -0.106 4.106 24 C 0.532 3.468 25 O -0.460 6.460 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.439 0.561 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.015 0.985 33 H 0.094 0.906 34 H -0.013 1.013 35 H 0.118 0.882 36 H 0.256 0.744 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 6.625 -0.787 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.331 5.331 3 C 0.404 3.596 4 O -0.428 6.428 5 N -0.377 5.377 6 C 0.034 3.966 7 C -0.146 4.146 8 C -0.067 4.067 9 N -0.220 5.220 10 C -0.021 4.021 11 C 0.067 3.933 12 C -0.507 4.507 13 H 0.072 0.928 14 C -0.112 4.112 15 N -0.517 5.517 16 Si 0.716 3.284 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.208 1.208 20 C -0.246 4.246 21 C -0.257 4.257 22 C -0.062 4.062 23 C -0.145 4.145 24 C 0.319 3.681 25 O -0.328 6.328 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.284 0.716 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.005 0.995 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.448 6.043 -0.571 12.958 hybrid contribution 0.111 0.272 0.016 0.294 sum -11.337 6.315 -0.555 12.989 Atomic orbital electron populations 1.21796 0.75458 1.04528 1.03523 1.46363 1.09426 1.08254 1.69084 1.15923 0.82324 0.83982 0.77416 1.90984 1.75520 1.20362 1.55955 1.45690 1.06215 1.07839 1.77932 1.21226 0.93377 0.80776 1.01237 1.21767 0.96059 1.03724 0.93006 1.22084 0.92664 0.95263 0.96723 1.61541 1.03328 1.58307 0.98810 1.21754 0.85144 0.91479 1.03757 1.18948 0.91715 0.94788 0.87808 1.20308 1.48531 0.89813 0.92093 0.92811 1.24690 0.93807 0.97078 0.95622 1.69764 1.48884 1.35034 0.97993 0.86633 0.78362 0.85369 0.78035 1.20059 1.21647 1.20845 1.22972 0.93544 1.01130 1.06907 1.22965 1.05807 0.99996 0.96960 1.21958 0.92686 0.95472 0.96056 1.21750 0.96024 1.03558 0.93179 1.20862 0.88425 0.84741 0.74089 1.90795 1.79083 1.17694 1.45248 0.91068 0.89515 0.89342 0.71632 0.88189 0.91355 0.96736 0.88811 0.99470 0.86438 0.93381 0.92058 0.90484 0.90873 0.91961 0.96632 0.89246 0.91329 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.74 59.85 0.64 1.47 16 2 N -0.58 -7.31 3.01 -128.25 -0.39 -7.69 16 3 C 0.70 9.58 8.63 -87.80 -0.76 8.82 16 4 O -0.55 -8.92 17.48 5.33 0.09 -8.83 16 5 N -0.71 -8.80 5.33 -53.86 -0.29 -9.09 16 6 C 0.12 1.67 0.84 -133.09 -0.11 1.56 16 7 C -0.11 -1.52 5.15 -26.89 -0.14 -1.66 16 8 C 0.06 0.98 5.17 -3.78 -0.02 0.96 16 9 N -0.50 -9.22 4.16 -234.51 -0.98 -10.19 16 10 C 0.11 2.20 4.05 -3.82 -0.02 2.19 16 11 C 0.07 1.54 1.57 -155.66 -0.24 1.30 16 12 C -0.47 -11.94 8.72 -34.44 -0.30 -12.24 16 13 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 14 C 0.09 2.30 5.18 -17.82 -0.09 2.21 16 15 N -0.88 -22.32 10.71 55.43 0.59 -21.73 16 16 Si 0.89 20.50 29.55 -169.99 -5.02 15.48 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.21 -4.45 9.96 -26.69 -0.27 -4.71 16 21 C -0.22 -4.45 8.38 -26.70 -0.22 -4.67 16 22 C 0.07 1.07 5.35 -3.77 -0.02 1.05 16 23 C -0.11 -1.52 5.15 -26.89 -0.14 -1.66 16 24 C 0.53 7.41 6.95 -10.73 -0.07 7.34 16 25 O -0.46 -7.44 17.77 5.60 0.10 -7.34 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.72 8.01 -51.93 -0.42 0.31 16 28 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 29 H 0.44 4.96 7.90 -40.82 -0.32 4.63 16 30 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.01 0.22 7.46 -51.93 -0.39 -0.17 16 33 H 0.09 1.66 5.98 -51.93 -0.31 1.34 16 34 H -0.01 -0.25 8.00 -51.92 -0.42 -0.67 16 35 H 0.12 2.75 5.74 -51.93 -0.30 2.45 16 36 H 0.26 6.34 8.32 -40.82 -0.34 6.00 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 41 H 0.02 0.23 7.46 -51.92 -0.39 -0.16 16 42 H 0.09 1.57 7.94 -51.93 -0.41 1.16 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -28.14 350.85 -9.06 -37.20 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.70 Total: 4.97 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.76 Total: 1.94 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.06 Total: -48.70 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.19 Total: -16.17 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.14 -9.06 -37.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.121 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds