Wall clock time and date at job start Tue Mar 31 2020 04:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36598 * 126.58021 * 2 1 4 4 C 1.47521 * 125.76780 * 359.97438 * 3 2 1 5 5 O 1.21592 * 120.00486 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99834 * 179.71740 * 4 3 2 7 7 C 1.47421 * 125.64692 * 359.68984 * 6 4 3 8 8 C 1.55132 * 104.71877 * 155.81657 * 7 6 4 9 9 C 1.55155 * 101.48719 * 37.29608 * 8 7 6 10 10 H 1.09009 * 110.72203 * 82.69426 * 9 8 7 11 11 N 1.46496 * 110.72243 * 205.96709 * 9 8 7 12 12 C 1.36936 * 120.00161 * 199.97701 * 11 9 8 13 13 H 1.07992 * 120.00129 * 359.97438 * 12 11 9 14 14 C 1.38815 * 119.99704 * 180.02562 * 12 11 9 15 15 N 1.31613 * 120.00408 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46918 * 59.99447 * 16 14 12 18 18 H 1.48496 * 109.47146 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46938 * 299.99941 * 16 14 12 20 20 C 1.47026 * 125.64491 * 179.97438 * 6 4 3 21 21 N 1.34398 * 108.45972 * 179.72127 * 3 2 1 22 22 N 1.28760 * 109.52388 * 0.23752 * 21 3 2 23 23 N 1.34824 * 126.58315 * 180.12631 * 2 1 3 24 24 C 1.46492 * 126.59244 * 0.03283 * 23 2 1 25 25 C 1.53008 * 109.47199 * 120.25997 * 24 23 2 26 26 C 1.52994 * 109.47254 * 240.25768 * 24 23 2 27 27 H 1.09004 * 109.46697 * 90.02935 * 1 2 3 28 28 H 1.09001 * 109.46941 * 210.02733 * 1 2 3 29 29 H 1.08990 * 109.47358 * 330.02704 * 1 2 3 30 30 H 1.09001 * 110.36459 * 274.74400 * 7 6 4 31 31 H 1.09000 * 110.37050 * 37.07250 * 7 6 4 32 32 H 1.08996 * 111.19429 * 279.18793 * 8 7 6 33 33 H 1.09004 * 110.90117 * 155.27414 * 8 7 6 34 34 H 0.97008 * 119.99740 * 19.97304 * 11 9 8 35 35 H 0.97000 * 120.00284 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.87892 * 300.43600 * 20 6 4 37 37 H 1.09001 * 109.88127 * 61.45027 * 20 6 4 38 38 H 1.08995 * 109.47308 * 0.26032 * 24 23 2 39 39 H 1.09002 * 109.46776 * 59.99476 * 25 24 23 40 40 H 1.09001 * 109.47216 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.46746 * 300.00294 * 25 24 23 42 42 H 1.09001 * 109.47435 * 180.02562 * 26 24 23 43 43 H 1.09003 * 109.47357 * 300.00003 * 26 24 23 44 44 H 1.09005 * 109.47009 * 60.00440 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 0.0053 7 6 4.2457 3.3267 0.0190 8 6 4.8025 4.6386 -0.5938 9 6 3.8219 5.6914 -0.0131 10 1 4.1172 5.9782 0.9963 11 7 3.7458 6.8657 -0.8857 12 6 3.2840 8.0567 -0.3922 13 1 2.9756 8.1302 0.6401 14 6 3.2114 9.1692 -1.2192 15 7 3.5869 9.0796 -2.4775 16 14 2.5809 10.7937 -0.5462 17 1 3.4492 11.2357 0.5745 18 1 2.6027 11.8171 -1.6220 19 1 1.1900 10.6199 -0.0558 20 6 2.4758 4.9369 0.0050 21 7 3.5983 0.6789 0.0062 22 7 3.6299 -0.6083 0.0050 23 7 2.3105 -1.0826 -0.0024 24 6 1.8865 -2.4848 -0.0062 25 6 2.4353 -3.1803 -1.2537 26 6 2.4232 -3.1833 1.2447 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5134 30 1 4.6033 3.2010 1.0409 31 1 4.5329 2.4712 -0.5924 32 1 4.7529 4.6171 -1.6825 33 1 5.8215 4.8246 -0.2543 34 1 4.0226 6.7996 -1.8131 35 1 3.5365 9.8571 -3.0552 36 1 1.8956 5.1922 -0.8817 37 1 1.9147 5.1967 0.9026 38 1 0.7977 -2.5352 -0.0114 39 1 3.5241 -3.1298 -1.2484 40 1 2.1201 -4.2237 -1.2563 41 1 2.0529 -2.6826 -2.1449 42 1 2.1082 -4.2268 1.2417 43 1 3.5121 -3.1330 1.2500 44 1 2.0322 -2.6879 2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970365337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:45 Heat of formation + Delta-G solvation = 75.148954 kcal Electronic energy + Delta-G solvation = -25346.495531 eV Core-core repulsion = 21722.501583 eV Total energy + Delta-G solvation = -3623.993947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39193 -39.39667 -37.17252 -36.70884 -34.08163 -33.17325 -31.68670 -30.92692 -29.47806 -28.27566 -27.88686 -27.11577 -24.40362 -24.13454 -22.89850 -21.92092 -20.48573 -20.00148 -19.12686 -17.56642 -17.10587 -16.41321 -16.30320 -15.85378 -15.32484 -14.83694 -14.53102 -14.29893 -14.01663 -13.61250 -13.50923 -13.32107 -13.25543 -13.12774 -12.82867 -12.77168 -12.60065 -12.53816 -12.06673 -12.00340 -11.80617 -11.70341 -11.45187 -11.15285 -10.95627 -10.74829 -10.66717 -10.36858 -10.20439 -9.93575 -9.79517 -9.68082 -9.19914 -8.94045 -8.18958 -7.02453 -5.78019 -3.08454 1.02277 1.75722 1.80666 3.26821 3.45945 3.46139 3.50176 3.51176 3.88779 4.05589 4.24993 4.36291 4.42061 4.58388 4.62634 4.83455 4.96394 5.01960 5.13862 5.14462 5.16660 5.25189 5.34751 5.44038 5.47389 5.55373 5.56988 5.69719 5.71484 5.79644 5.85911 6.01801 6.19514 6.24333 6.29891 6.42902 6.51283 6.63772 6.78771 6.97883 7.70242 7.81256 7.92232 8.38996 8.42297 9.51416 10.05873 10.40883 11.44099 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.002722 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.455202 B =10284.808856 C =10674.108717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.119 3.881 3 C -0.095 4.095 4 C 0.609 3.391 5 O -0.545 6.545 6 N -0.596 5.596 7 C 0.104 3.896 8 C -0.141 4.141 9 C 0.171 3.829 10 H 0.066 0.934 11 N -0.713 5.713 12 C -0.247 4.247 13 H 0.072 0.928 14 C -0.010 4.010 15 N -0.931 5.931 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C 0.085 3.915 21 N -0.201 5.201 22 N -0.071 5.071 23 N -0.359 5.359 24 C 0.144 3.856 25 C -0.162 4.162 26 C -0.163 4.163 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -27.628 5.412 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.019 4.019 3 C -0.234 4.234 4 C 0.396 3.604 5 O -0.423 6.423 6 N -0.328 5.328 7 C -0.020 4.020 8 C -0.180 4.180 9 C 0.059 3.941 10 H 0.084 0.916 11 N -0.353 5.353 12 C -0.378 4.378 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.739 3.261 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.211 1.211 20 C -0.040 4.040 21 N -0.073 5.073 22 N -0.050 5.050 23 N -0.146 5.146 24 C 0.043 3.957 25 C -0.220 4.220 26 C -0.221 4.221 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.394 -27.775 5.490 28.413 hybrid contribution -1.262 0.954 -0.009 1.583 sum -3.657 -26.821 5.480 27.618 Atomic orbital electron populations 1.20710 0.84866 1.05205 1.04615 1.21891 0.96182 0.86352 0.97449 1.21245 0.88931 0.95367 1.17878 1.16381 0.84863 0.81878 0.77315 1.90747 1.15595 1.83357 1.52640 1.48315 1.07143 1.06886 1.70421 1.22534 0.79111 0.99110 1.01199 1.23123 0.99678 0.93967 1.01238 1.21223 0.90475 0.87016 0.95378 0.91650 1.42374 1.77014 1.05200 1.10713 1.19222 1.35780 0.87284 0.95482 0.90985 1.24768 1.01827 0.98244 0.95781 1.69650 1.53323 1.29938 1.04945 0.86249 0.78772 0.83459 0.77590 1.21175 1.21692 1.21135 1.23274 1.01603 0.77103 1.02063 1.74699 1.19004 1.03731 1.09915 1.81906 0.96335 1.03606 1.23119 1.50599 1.06376 1.07087 1.50548 1.21617 1.00434 0.75430 0.98257 1.22154 1.03222 1.00793 0.95849 1.22160 1.03294 1.00791 0.95817 0.89107 0.90960 0.86855 0.91578 0.89199 0.90623 0.90076 0.77852 0.93348 0.90746 0.92267 0.87369 0.90664 0.89973 0.91684 0.89980 0.90663 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.40 36.00 0.34 -0.51 16 2 C 0.12 1.41 7.02 -81.87 -0.57 0.84 16 3 C -0.09 -1.43 6.84 -83.55 -0.57 -2.01 16 4 C 0.61 10.79 7.85 -12.47 -0.10 10.69 16 5 O -0.55 -10.60 15.04 5.28 0.08 -10.52 16 6 N -0.60 -10.60 3.33 -171.60 -0.57 -11.17 16 7 C 0.10 1.61 6.14 -2.41 -0.01 1.59 16 8 C -0.14 -2.34 6.71 -24.46 -0.16 -2.50 16 9 C 0.17 3.42 3.59 -66.10 -0.24 3.19 16 10 H 0.07 1.29 8.12 -51.92 -0.42 0.87 16 11 N -0.71 -17.79 5.18 -51.65 -0.27 -18.05 16 12 C -0.25 -6.81 9.98 -15.06 -0.15 -6.96 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 15 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 16 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.08 1.68 6.62 -3.06 -0.02 1.66 16 21 N -0.20 -3.00 9.39 32.85 0.31 -2.70 16 22 N -0.07 -0.94 13.67 60.35 0.82 -0.11 16 23 N -0.36 -3.72 3.28 -50.41 -0.17 -3.89 16 24 C 0.14 0.86 3.68 -67.93 -0.25 0.61 16 25 C -0.16 -0.84 9.47 37.16 0.35 -0.49 16 26 C -0.16 -0.82 9.47 37.15 0.35 -0.46 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.40 7.20 -51.93 -0.37 0.03 16 29 H 0.11 1.24 6.43 -51.93 -0.33 0.91 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.36 6.12 -51.93 -0.32 1.05 16 32 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.39 10.25 7.71 -40.82 -0.31 9.93 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 1.67 8.03 -51.93 -0.42 1.25 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.11 0.41 6.79 -51.93 -0.35 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -33.37 362.04 -6.49 -39.86 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.72 Total: 5.77 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.13 Total: 5.28 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.85 Total: -63.25 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.37 -6.49 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970365337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.012 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds