Wall clock time and date at job start Tue Mar 31 2020 04:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36598 * 126.58021 * 2 1 4 4 C 1.47521 * 125.76780 * 359.97438 * 3 2 1 5 5 O 1.21592 * 120.00486 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99834 * 179.71740 * 4 3 2 7 7 C 1.47421 * 125.64692 * 359.68984 * 6 4 3 8 8 C 1.55132 * 104.71877 * 155.81657 * 7 6 4 9 9 C 1.55155 * 101.48719 * 37.29608 * 8 7 6 10 10 H 1.09009 * 110.72203 * 82.69426 * 9 8 7 11 11 N 1.46496 * 110.72243 * 205.96709 * 9 8 7 12 12 C 1.36936 * 120.00161 * 199.97701 * 11 9 8 13 13 H 1.07992 * 120.00129 * 359.97438 * 12 11 9 14 14 C 1.38815 * 119.99704 * 180.02562 * 12 11 9 15 15 N 1.31613 * 120.00408 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46918 * 59.99447 * 16 14 12 18 18 H 1.48496 * 109.47146 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46938 * 299.99941 * 16 14 12 20 20 C 1.47026 * 125.64491 * 179.97438 * 6 4 3 21 21 N 1.34398 * 108.45972 * 179.72127 * 3 2 1 22 22 N 1.28760 * 109.52388 * 0.23752 * 21 3 2 23 23 N 1.34824 * 126.58315 * 180.12631 * 2 1 3 24 24 C 1.46492 * 126.59244 * 0.03283 * 23 2 1 25 25 C 1.53008 * 109.47199 * 120.25997 * 24 23 2 26 26 C 1.52994 * 109.47254 * 240.25768 * 24 23 2 27 27 H 1.09004 * 109.46697 * 90.02935 * 1 2 3 28 28 H 1.09001 * 109.46941 * 210.02733 * 1 2 3 29 29 H 1.08990 * 109.47358 * 330.02704 * 1 2 3 30 30 H 1.09001 * 110.36459 * 274.74400 * 7 6 4 31 31 H 1.09000 * 110.37050 * 37.07250 * 7 6 4 32 32 H 1.08996 * 111.19429 * 279.18793 * 8 7 6 33 33 H 1.09004 * 110.90117 * 155.27414 * 8 7 6 34 34 H 0.97008 * 119.99740 * 19.97304 * 11 9 8 35 35 H 0.97000 * 120.00284 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.87892 * 300.43600 * 20 6 4 37 37 H 1.09001 * 109.88127 * 61.45027 * 20 6 4 38 38 H 1.08995 * 109.47308 * 0.26032 * 24 23 2 39 39 H 1.09002 * 109.46776 * 59.99476 * 25 24 23 40 40 H 1.09001 * 109.47216 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.46746 * 300.00294 * 25 24 23 42 42 H 1.09001 * 109.47435 * 180.02562 * 26 24 23 43 43 H 1.09003 * 109.47357 * 300.00003 * 26 24 23 44 44 H 1.09005 * 109.47009 * 60.00440 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 0.0053 7 6 4.2457 3.3267 0.0190 8 6 4.8025 4.6386 -0.5938 9 6 3.8219 5.6914 -0.0131 10 1 4.1172 5.9782 0.9963 11 7 3.7458 6.8657 -0.8857 12 6 3.2840 8.0567 -0.3922 13 1 2.9756 8.1302 0.6401 14 6 3.2114 9.1692 -1.2192 15 7 3.5869 9.0796 -2.4775 16 14 2.5809 10.7937 -0.5462 17 1 3.4492 11.2357 0.5745 18 1 2.6027 11.8171 -1.6220 19 1 1.1900 10.6199 -0.0558 20 6 2.4758 4.9369 0.0050 21 7 3.5983 0.6789 0.0062 22 7 3.6299 -0.6083 0.0050 23 7 2.3105 -1.0826 -0.0024 24 6 1.8865 -2.4848 -0.0062 25 6 2.4353 -3.1803 -1.2537 26 6 2.4232 -3.1833 1.2447 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5134 30 1 4.6033 3.2010 1.0409 31 1 4.5329 2.4712 -0.5924 32 1 4.7529 4.6171 -1.6825 33 1 5.8215 4.8246 -0.2543 34 1 4.0226 6.7996 -1.8131 35 1 3.5365 9.8571 -3.0552 36 1 1.8956 5.1922 -0.8817 37 1 1.9147 5.1967 0.9026 38 1 0.7977 -2.5352 -0.0114 39 1 3.5241 -3.1298 -1.2484 40 1 2.1201 -4.2237 -1.2563 41 1 2.0529 -2.6826 -2.1449 42 1 2.1082 -4.2268 1.2417 43 1 3.5121 -3.1330 1.2500 44 1 2.0322 -2.6879 2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970365337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:44 Heat of formation + Delta-G solvation = 52.175941 kcal Electronic energy + Delta-G solvation = -25347.491715 eV Core-core repulsion = 21722.501583 eV Total energy + Delta-G solvation = -3624.990132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.36443 -40.80652 -38.67242 -37.37719 -35.92798 -34.02957 -33.40444 -32.00270 -31.07253 -29.46869 -28.46211 -28.26798 -26.08842 -25.07658 -24.36503 -23.14576 -21.58029 -21.28097 -20.37688 -19.25855 -18.39172 -17.61072 -17.32916 -17.13600 -16.72113 -16.28926 -15.51427 -15.33493 -15.32499 -15.15528 -14.86338 -14.37782 -14.21036 -14.04655 -13.99697 -13.84989 -13.44620 -13.25831 -13.18936 -13.14430 -12.94390 -12.82351 -12.60243 -12.52688 -12.43323 -12.30594 -12.13934 -11.92914 -11.74367 -11.48065 -11.19429 -11.11221 -10.96533 -10.25732 -9.62676 -9.09182 -7.95213 -5.25773 0.09773 0.59998 1.03562 1.48758 1.51866 1.57625 1.92876 2.17211 2.56750 3.09716 3.26577 3.36487 3.50376 3.65859 3.69091 3.81783 3.93299 3.97503 4.00690 4.13017 4.35388 4.35470 4.46956 4.56371 4.58170 4.62395 4.64350 4.69771 4.76204 4.77494 4.86366 4.96007 5.03447 5.12381 5.16932 5.19068 5.22867 5.28784 5.38429 5.53177 5.57037 6.25767 6.45863 6.82353 7.07857 7.32709 8.04041 8.28598 9.27658 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.002722 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.455202 B =10284.808856 C =10674.108717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.131 3.869 3 C -0.127 4.127 4 C 0.606 3.394 5 O -0.571 6.571 6 N -0.602 5.602 7 C 0.114 3.886 8 C -0.129 4.129 9 C 0.167 3.833 10 H 0.073 0.927 11 N -0.725 5.725 12 C -0.247 4.247 13 H 0.079 0.921 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.973 3.027 17 H -0.274 1.274 18 H -0.296 1.296 19 H -0.280 1.280 20 C 0.098 3.902 21 N -0.218 5.218 22 N -0.082 5.082 23 N -0.344 5.344 24 C 0.131 3.869 25 C -0.159 4.159 26 C -0.159 4.159 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.376 0.624 35 H 0.252 0.748 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.141 0.859 39 H 0.057 0.943 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 -30.233 6.595 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.266 4.266 4 C 0.394 3.606 5 O -0.451 6.451 6 N -0.333 5.333 7 C -0.008 4.008 8 C -0.168 4.168 9 C 0.057 3.943 10 H 0.091 0.909 11 N -0.364 5.364 12 C -0.378 4.378 13 H 0.097 0.903 14 C -0.265 4.265 15 N -0.618 5.618 16 Si 0.802 3.198 17 H -0.200 1.200 18 H -0.222 1.222 19 H -0.206 1.206 20 C -0.028 4.028 21 N -0.091 5.091 22 N -0.061 5.061 23 N -0.131 5.131 24 C 0.032 3.968 25 C -0.217 4.217 26 C -0.217 4.217 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.209 0.791 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.132 0.868 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.969 -30.452 6.715 31.325 hybrid contribution -1.122 1.546 -0.349 1.942 sum -4.090 -28.906 6.366 29.880 Atomic orbital electron populations 1.20817 0.82614 1.06143 1.05601 1.22264 0.97365 0.85804 0.95345 1.21018 0.89969 0.94630 1.20992 1.16767 0.84491 0.82908 0.76418 1.90720 1.16578 1.84051 1.53705 1.48355 1.08255 1.05919 1.70820 1.22567 0.77604 0.98496 1.02168 1.23058 1.00026 0.93101 1.00609 1.21392 0.91419 0.86336 0.95176 0.90865 1.42516 1.77008 1.06069 1.10779 1.19617 1.34336 0.88195 0.95698 0.90328 1.25580 1.03036 1.01689 0.96170 1.69807 1.55321 1.30485 1.06184 0.85219 0.78353 0.79301 0.76925 1.20030 1.22212 1.20640 1.22844 1.00853 0.78907 1.00197 1.74637 1.19210 1.04580 1.10670 1.81809 0.98093 1.02956 1.23290 1.50954 1.05118 1.08415 1.48619 1.22217 1.02443 0.73001 0.99143 1.22165 1.02071 1.02491 0.94964 1.22169 1.02150 1.02465 0.94898 0.87913 0.86810 0.89071 0.89927 0.88544 0.91561 0.87813 0.79138 0.93938 0.93999 0.92817 0.84113 0.92367 0.86810 0.92488 0.86842 0.92362 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.40 71.23 0.67 -0.77 16 2 C 0.13 2.91 7.02 41.71 0.29 3.20 16 3 C -0.13 -3.78 6.84 40.82 0.28 -3.50 16 4 C 0.61 21.74 7.85 86.69 0.68 22.42 16 5 O -0.57 -22.68 15.04 -4.00 -0.06 -22.74 16 6 N -0.60 -21.64 3.33 -815.09 -2.71 -24.35 16 7 C 0.11 3.46 6.14 86.93 0.53 3.99 16 8 C -0.13 -4.22 6.71 32.06 0.22 -4.00 16 9 C 0.17 6.73 3.59 46.18 0.17 6.89 16 10 H 0.07 2.85 8.12 -2.38 -0.02 2.83 16 11 N -0.72 -36.85 5.18 -317.33 -1.64 -38.49 16 12 C -0.25 -13.75 9.98 84.03 0.84 -12.91 16 13 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 15 N -0.97 -59.67 13.06 21.65 0.28 -59.38 16 16 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 C 0.10 3.99 6.62 86.73 0.57 4.56 16 21 N -0.22 -6.41 9.39 -50.00 -0.47 -6.88 16 22 N -0.08 -2.09 13.67 37.02 0.51 -1.59 16 23 N -0.34 -6.43 3.28 -313.41 -1.03 -7.46 16 24 C 0.13 1.13 3.68 44.99 0.17 1.30 16 25 C -0.16 -1.19 9.47 71.98 0.68 -0.51 16 26 C -0.16 -1.11 9.47 71.98 0.68 -0.42 16 27 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.11 0.77 7.20 -2.39 -0.02 0.75 16 29 H 0.09 1.91 6.43 -2.39 -0.02 1.90 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.10 2.87 6.12 -2.39 -0.01 2.85 16 32 H 0.07 2.30 8.00 -2.39 -0.02 2.28 16 33 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 34 H 0.38 20.52 7.71 -92.70 -0.72 19.81 16 35 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.04 1.96 8.03 -2.39 -0.02 1.95 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.14 0.36 6.79 -2.39 -0.02 0.34 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -74.58 362.04 3.45 -71.13 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.30 Total: 24.65 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.24 Total: 16.54 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -5.06 Total: -138.15 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.58 3.45 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970365337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.305 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds