Wall clock time and date at job start Tue Mar 31 2020 03:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.52999 * 109.47126 * 239.99717 * 2 1 3 5 5 N 1.46498 * 109.47291 * 185.00115 * 4 2 1 6 6 C 1.46499 * 119.99981 * 270.00186 * 5 4 2 7 7 C 1.36936 * 120.00173 * 90.00264 * 5 4 2 8 8 H 1.08001 * 119.99532 * 342.76688 * 7 5 4 9 9 C 1.38807 * 119.99995 * 162.48653 * 7 5 4 10 10 N 1.31614 * 120.00235 * 345.48327 * 9 7 5 11 11 Si 1.86806 * 119.99815 * 165.48219 * 9 7 5 12 12 H 1.48498 * 109.46789 * 59.99849 * 11 9 7 13 13 H 1.48498 * 109.47153 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46845 * 300.00041 * 11 9 7 15 15 N 1.46504 * 109.47196 * 120.00028 * 2 1 3 16 16 C 1.34773 * 120.00125 * 275.00019 * 15 2 1 17 17 O 1.21290 * 119.99697 * 359.97438 * 16 15 2 18 18 C 1.50701 * 120.00351 * 179.97438 * 16 15 2 19 19 C 1.52996 * 109.47418 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47040 * 179.97438 * 19 18 16 21 21 C 1.38827 * 120.35254 * 90.00565 * 20 19 18 22 22 C 1.38375 * 118.48755 * 179.97438 * 21 20 19 23 23 C 1.38923 * 119.10809 * 359.97438 * 22 21 20 24 24 O 1.35682 * 119.68231 * 180.02562 * 23 22 21 25 25 N 1.32241 * 120.63180 * 0.02562 * 23 22 21 26 26 C 1.31970 * 121.64646 * 359.68235 * 25 23 22 27 27 H 1.09002 * 109.47389 * 59.99759 * 1 2 3 28 28 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47227 * 300.00158 * 1 2 3 30 30 H 1.09001 * 109.46634 * 65.00201 * 4 2 1 31 31 H 1.09004 * 109.47409 * 305.00497 * 4 2 1 32 32 H 1.08999 * 109.47469 * 264.99253 * 6 5 4 33 33 H 1.09008 * 109.47402 * 24.99063 * 6 5 4 34 34 H 1.09003 * 109.47251 * 144.98874 * 6 5 4 35 35 H 0.97004 * 120.00153 * 180.02562 * 10 9 7 36 36 H 0.96999 * 119.99653 * 94.99301 * 15 2 1 37 37 H 1.09000 * 109.46812 * 300.00491 * 18 16 15 38 38 H 1.09001 * 109.46464 * 59.99614 * 18 16 15 39 39 H 1.08998 * 109.47125 * 300.00566 * 19 18 16 40 40 H 1.09001 * 109.46682 * 60.00176 * 19 18 16 41 41 H 1.08008 * 120.75791 * 359.97438 * 21 20 19 42 42 H 1.07994 * 120.44618 * 179.97438 * 22 21 20 43 43 H 0.96699 * 113.99714 * 90.00441 * 24 23 22 44 44 H 1.08009 * 119.58081 * 180.31219 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5075 -2.5503 0.0539 9 6 5.4184 -2.2082 -0.8539 10 7 6.0409 -1.6290 -1.8585 11 14 6.3293 -3.4238 0.2334 12 1 5.6545 -4.7452 0.1718 13 1 7.7294 -3.5608 -0.2424 14 1 6.3280 -2.9321 1.6346 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8590 1.1586 2.4115 18 6 2.6489 -0.7288 3.5878 19 6 2.7011 0.2544 4.7588 20 6 3.2023 -0.4563 5.9895 21 6 4.5612 -0.4990 6.2705 22 6 4.9788 -1.1617 7.4112 23 6 4.0298 -1.7578 8.2321 24 8 4.4263 -2.4101 9.3538 25 7 2.7436 -1.6955 7.9308 26 6 2.3147 -1.0660 6.8531 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7516 -0.1583 -2.1369 31 1 1.6053 -1.7199 -1.2952 32 1 4.6162 -0.0339 -2.7796 33 1 3.7751 1.1695 -1.7732 34 1 5.2324 0.3553 -1.1556 35 1 6.9726 -1.8335 -2.0345 36 1 2.2489 -1.6318 1.1526 37 1 1.9760 -1.5507 3.8325 38 1 3.6480 -1.1214 3.3985 39 1 3.3742 1.0760 4.5137 40 1 1.7021 0.6473 4.9480 41 1 5.2762 -0.0258 5.6136 42 1 6.0284 -1.2147 7.6599 43 1 4.4693 -1.8493 10.1404 44 1 1.2560 -1.0316 6.6417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:36 Heat of formation + Delta-G solvation = -27.833441 kcal Electronic energy + Delta-G solvation = -25170.691773 eV Core-core repulsion = 21509.939423 eV Total energy + Delta-G solvation = -3660.752350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.68532 -39.35178 -37.50130 -36.45852 -34.26807 -33.92500 -32.29459 -31.44565 -30.33324 -29.05466 -26.22414 -25.66220 -24.91187 -23.90940 -22.24161 -21.54063 -20.18199 -19.77148 -19.04128 -17.16429 -17.11378 -16.46688 -16.18788 -15.63765 -15.22628 -15.12538 -14.90408 -14.43122 -13.88410 -13.65910 -13.44326 -13.39799 -13.19596 -12.95390 -12.76033 -12.33545 -12.06540 -12.05158 -11.89368 -11.70926 -11.60838 -11.08577 -11.02943 -10.89274 -10.86276 -10.43322 -10.32708 -10.07773 -10.05030 -9.90454 -9.62314 -9.38500 -8.90115 -8.59466 -8.42979 -6.85360 -5.78590 -3.20543 0.76903 1.02728 3.12944 3.26208 3.31152 3.36566 3.38981 3.55959 3.78935 4.42020 4.46773 4.62253 4.74421 4.80510 5.01442 5.14255 5.23228 5.28483 5.40111 5.43741 5.47075 5.59397 5.68023 5.78669 5.82055 5.84287 5.92345 6.09475 6.12297 6.18534 6.20035 6.33537 6.43923 6.44340 6.73875 6.80487 7.13326 7.23375 7.39580 7.60401 7.70400 7.75747 8.12649 8.29991 8.76778 9.16268 9.80826 10.29013 11.26324 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.003886 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.121264 B = 7202.937836 C = 8897.810640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.905 5.905 11 Si 0.899 3.101 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.285 1.285 15 N -0.695 5.695 16 C 0.514 3.486 17 O -0.561 6.561 18 C -0.138 4.138 19 C -0.057 4.057 20 C -0.136 4.136 21 C -0.056 4.056 22 C -0.181 4.181 23 C 0.298 3.702 24 O -0.484 6.484 25 N -0.503 5.503 26 C 0.125 3.875 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.027 0.973 33 H -0.005 1.005 34 H 0.046 0.954 35 H 0.253 0.747 36 H 0.403 0.597 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.398 0.602 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 2.681 14.909 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.381 4.381 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.551 5.551 11 Si 0.729 3.271 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 N -0.345 5.345 16 C 0.300 3.700 17 O -0.441 6.441 18 C -0.178 4.178 19 C -0.096 4.096 20 C -0.139 4.139 21 C -0.082 4.082 22 C -0.202 4.202 23 C 0.119 3.881 24 O -0.291 6.291 25 N -0.221 5.221 26 C -0.032 4.032 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.239 0.761 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.255 0.745 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.704 2.569 15.065 16.689 hybrid contribution 1.454 -0.504 0.327 1.574 sum -5.250 2.065 15.392 16.393 Atomic orbital electron populations 1.22121 0.96596 1.01375 1.01610 1.21852 0.92134 0.98282 0.86797 0.90546 1.21052 0.85996 0.98239 0.93432 1.43862 0.98914 1.21250 1.68269 1.20795 0.92989 0.86056 0.98083 1.19001 0.94210 1.04057 1.20828 0.91570 1.24888 0.98189 0.99122 0.97403 1.70088 1.11121 1.45884 1.27966 0.86432 0.79352 0.81024 0.80333 1.20959 1.21605 1.21140 1.45949 1.65276 1.14387 1.08912 1.20413 0.77551 0.87231 0.84831 1.90639 1.51773 1.16114 1.85589 1.21653 1.03858 0.99301 0.93023 1.20238 1.03071 0.96919 0.89353 1.21023 0.94193 1.00364 0.98270 1.21545 0.95650 0.95597 0.95372 1.22122 1.01222 0.99735 0.97168 1.19182 0.87756 0.91765 0.89370 1.84796 1.87451 1.38584 1.18238 1.67155 1.17566 1.17112 1.20271 1.22458 1.00207 0.91983 0.88545 0.92168 0.92933 0.92915 0.93033 0.93084 0.95501 0.98608 0.93494 0.93670 0.76114 0.89194 0.88581 0.89746 0.89797 0.84006 0.84214 0.74523 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 37.16 0.35 -1.87 16 2 C 0.12 2.01 2.88 -67.93 -0.20 1.81 16 3 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 4 C 0.14 2.67 5.30 -4.04 -0.02 2.64 16 5 N -0.60 -14.11 2.82 -181.12 -0.51 -14.62 16 6 C 0.17 4.01 8.97 59.85 0.54 4.55 16 7 C -0.25 -6.31 8.80 -15.06 -0.13 -6.44 16 8 H 0.07 1.55 6.40 -52.49 -0.34 1.21 16 9 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 10 N -0.91 -25.55 10.48 55.49 0.58 -24.97 16 11 Si 0.90 20.80 29.58 -169.99 -5.03 15.77 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 N -0.70 -11.71 4.49 -53.80 -0.24 -11.95 16 16 C 0.51 8.49 7.79 -10.99 -0.09 8.40 16 17 O -0.56 -10.84 15.65 5.55 0.09 -10.75 16 18 C -0.14 -1.78 5.68 -27.88 -0.16 -1.93 16 19 C -0.06 -0.66 4.66 -27.88 -0.13 -0.79 16 20 C -0.14 -1.48 5.15 -104.48 -0.54 -2.02 16 21 C -0.06 -0.59 9.85 -39.31 -0.39 -0.98 16 22 C -0.18 -1.87 10.04 -39.28 -0.39 -2.26 16 23 C 0.30 3.46 7.74 -17.12 -0.13 3.32 16 24 O -0.48 -4.86 13.56 -18.75 -0.25 -5.11 16 25 N -0.50 -6.37 10.39 -13.33 -0.14 -6.50 16 26 C 0.12 1.38 10.85 -17.57 -0.19 1.19 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 32 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 33 H 0.00 -0.10 8.03 -51.92 -0.42 -0.52 16 34 H 0.05 1.24 6.99 -51.93 -0.36 0.88 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.40 6.67 6.58 -40.82 -0.27 6.40 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 40 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 42 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.40 1.87 9.06 45.56 0.41 2.28 16 44 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -32.71 368.12 -7.47 -40.18 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.94 Total: 6.81 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.57 Total: 5.60 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.31 Total: -58.05 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.17 Total: -15.86 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.71 -7.47 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.347 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds