Wall clock time and date at job start Tue Mar 31 2020 03:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46716 * 2 1 4 4 C 1.53000 * 109.46826 * 119.99511 * 2 1 3 5 5 N 1.46505 * 109.46725 * 175.00024 * 4 2 1 6 6 C 1.46491 * 120.00145 * 270.00031 * 5 4 2 7 7 C 1.36940 * 119.99659 * 90.00646 * 5 4 2 8 8 H 1.07997 * 120.00539 * 23.60874 * 7 5 4 9 9 C 1.38812 * 119.99578 * 203.61348 * 7 5 4 10 10 N 1.31623 * 120.00358 * 11.32064 * 9 7 5 11 11 Si 1.86798 * 119.99875 * 191.31673 * 9 7 5 12 12 H 1.48501 * 109.47379 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47263 * 119.99806 * 11 9 7 14 14 H 1.48507 * 109.47458 * 239.99904 * 11 9 7 15 15 N 1.46494 * 109.47399 * 239.99776 * 2 1 3 16 16 C 1.34782 * 119.99945 * 85.00107 * 15 2 1 17 17 O 1.21285 * 120.00132 * 359.97438 * 16 15 2 18 18 C 1.50698 * 119.99875 * 180.02562 * 16 15 2 19 19 C 1.53000 * 109.47258 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47258 * 179.97438 * 19 18 16 21 21 C 1.38823 * 120.35937 * 90.00364 * 20 19 18 22 22 C 1.38377 * 118.48811 * 179.97438 * 21 20 19 23 23 C 1.38917 * 119.11180 * 359.97438 * 22 21 20 24 24 O 1.35674 * 119.68586 * 180.02562 * 23 22 21 25 25 N 1.32245 * 120.62776 * 0.02867 * 23 22 21 26 26 C 1.31968 * 121.65127 * 359.67990 * 25 23 22 27 27 H 1.09005 * 109.46941 * 60.00029 * 1 2 3 28 28 H 1.08996 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47087 * 300.00619 * 1 2 3 30 30 H 1.08994 * 109.47274 * 294.99924 * 4 2 1 31 31 H 1.09001 * 109.46932 * 55.00433 * 4 2 1 32 32 H 1.09008 * 109.47091 * 94.53478 * 6 5 4 33 33 H 1.09004 * 109.47495 * 214.53085 * 6 5 4 34 34 H 1.08999 * 109.47365 * 334.53271 * 6 5 4 35 35 H 0.97002 * 120.00122 * 180.02562 * 10 9 7 36 36 H 0.96999 * 119.99956 * 265.00584 * 15 2 1 37 37 H 1.08998 * 109.46988 * 299.99894 * 18 16 15 38 38 H 1.09002 * 109.47625 * 59.99601 * 18 16 15 39 39 H 1.08998 * 109.47310 * 300.00034 * 19 18 16 40 40 H 1.09002 * 109.46853 * 59.99465 * 19 18 16 41 41 H 1.08007 * 120.75317 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.44160 * 180.02562 * 22 21 20 43 43 H 0.96707 * 113.99921 * 89.99952 * 24 23 22 44 44 H 1.08000 * 119.58467 * 180.31072 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9918 0.5614 7 6 4.2798 0.1650 1.7241 8 1 3.8834 0.8072 2.4966 9 6 5.5799 0.3443 1.2720 10 7 5.9919 -0.2792 0.1885 11 14 6.7449 1.4708 2.2011 12 1 6.0434 2.0484 3.3757 13 1 7.9236 0.6934 2.6610 14 1 7.1937 2.5668 1.3051 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8583 1.1584 -2.4117 18 6 2.6491 -0.7289 -3.5876 19 6 2.7001 0.2541 -4.7590 20 6 3.2026 -0.4564 -5.9894 21 6 2.3115 -1.0768 -6.8544 22 6 2.8150 -1.7174 -7.9729 23 6 4.1869 -1.7176 -8.1913 24 8 4.6931 -2.3417 -9.2845 25 7 5.0041 -1.1153 -7.3439 26 6 4.5534 -0.4915 -6.2719 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7516 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2952 32 1 4.3533 -1.7641 -0.4801 33 1 5.0473 -2.2386 1.0889 34 1 3.4427 -2.8399 0.6071 35 1 6.9005 -0.1541 -0.1273 36 1 2.2491 -1.6318 -1.1525 37 1 3.6482 -1.1214 -3.3984 38 1 1.9762 -1.5507 -3.8325 39 1 1.7008 0.6462 -4.9481 40 1 3.3727 1.0762 -4.5144 41 1 1.2494 -1.0598 -6.6589 42 1 2.1502 -2.2099 -8.6670 43 1 4.7664 -1.7732 -10.0633 44 1 5.2504 -0.0063 -5.6047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:39 Heat of formation + Delta-G solvation = -29.060827 kcal Electronic energy + Delta-G solvation = -25193.251793 eV Core-core repulsion = 21532.446219 eV Total energy + Delta-G solvation = -3660.805574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64004 -39.26178 -37.45973 -36.39201 -34.20636 -33.85633 -32.25353 -31.31239 -30.36596 -29.01741 -26.18698 -25.62958 -24.84271 -23.87037 -22.19437 -21.44687 -20.17547 -19.69293 -19.00328 -17.07675 -16.82797 -16.79095 -16.16429 -15.49272 -15.19520 -14.99203 -14.75672 -14.38240 -13.84426 -13.62113 -13.42131 -13.26062 -13.16473 -13.03967 -12.77606 -12.14751 -12.06743 -12.02198 -11.84702 -11.65705 -11.43765 -11.08772 -10.95461 -10.84346 -10.77171 -10.54645 -10.20448 -10.03193 -9.94843 -9.86337 -9.55178 -9.29952 -8.84838 -8.59927 -8.33387 -6.75156 -5.73715 -3.19762 0.81684 1.05868 3.23937 3.30769 3.38373 3.46064 3.47419 3.61713 3.85569 4.49441 4.50825 4.68481 4.79329 4.82066 5.07754 5.16114 5.30640 5.33581 5.47904 5.48296 5.51644 5.67542 5.73518 5.80299 5.88636 5.90623 6.00449 6.10305 6.16733 6.23805 6.25109 6.40725 6.47059 6.53995 6.63720 6.89508 7.21227 7.26889 7.31118 7.64590 7.77743 7.80349 8.16215 8.38669 8.86065 9.22538 9.84709 10.32938 11.31497 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003446 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.246119 B = 8124.480732 C = 9380.662505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.085 0.915 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.699 5.699 16 C 0.518 3.482 17 O -0.555 6.555 18 C -0.135 4.135 19 C -0.058 4.058 20 C -0.135 4.135 21 C -0.059 4.059 22 C -0.185 4.185 23 C 0.297 3.703 24 O -0.485 6.485 25 N -0.501 5.501 26 C 0.130 3.870 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.042 0.958 34 H -0.006 1.006 35 H 0.251 0.749 36 H 0.395 0.605 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.398 0.602 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -4.066 -13.859 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 N -0.348 5.348 16 C 0.304 3.696 17 O -0.434 6.434 18 C -0.175 4.175 19 C -0.096 4.096 20 C -0.137 4.137 21 C -0.085 4.085 22 C -0.206 4.206 23 C 0.119 3.881 24 O -0.291 6.291 25 N -0.219 5.219 26 C -0.027 4.027 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.061 0.939 36 H 0.229 0.771 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.255 0.745 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.854 -3.789 -13.793 16.823 hybrid contribution 0.091 0.472 0.162 0.507 sum -8.762 -3.318 -13.631 16.541 Atomic orbital electron populations 1.22149 0.97030 1.00966 1.01601 1.21836 0.91526 0.99159 0.86545 0.89728 1.21196 0.85820 0.97168 0.94409 1.43886 0.99048 1.20858 1.68161 1.20843 0.94554 0.85035 0.97864 1.19212 0.94575 1.10504 1.14207 0.91451 1.25008 0.98867 0.99040 0.96361 1.70035 1.17114 1.45685 1.22109 0.86214 0.81044 0.80255 0.79183 1.20384 1.21700 1.21738 1.45797 1.65970 1.13663 1.09336 1.20340 0.77343 0.87209 0.84707 1.90644 1.51286 1.16027 1.85477 1.21626 1.03777 0.99098 0.93037 1.20240 1.02972 0.97099 0.89335 1.21034 0.94768 0.99923 0.98008 1.21457 1.00529 0.94033 0.92465 1.22072 0.95210 1.02808 1.00519 1.19205 0.87571 0.92245 0.89110 1.84789 1.86234 1.38122 1.19994 1.67195 1.40899 1.08810 1.04958 1.22591 0.93643 0.93969 0.92449 0.93043 0.93292 0.92192 0.92396 0.94102 0.95039 0.93887 0.98740 0.93907 0.77148 0.88405 0.89589 0.90055 0.89472 0.84287 0.84375 0.74533 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.14 2.88 -67.93 -0.20 1.94 16 3 H 0.08 1.89 7.58 -51.93 -0.39 1.50 16 4 C 0.14 2.71 5.33 -4.04 -0.02 2.69 16 5 N -0.60 -14.11 2.78 -181.12 -0.50 -14.62 16 6 C 0.16 3.68 7.61 59.84 0.46 4.13 16 7 C -0.26 -6.84 9.66 -15.06 -0.15 -6.99 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -25.57 10.66 55.49 0.59 -24.97 16 11 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 N -0.70 -12.16 4.41 -53.80 -0.24 -12.39 16 16 C 0.52 9.16 7.79 -10.98 -0.09 9.07 16 17 O -0.56 -11.69 15.65 5.55 0.09 -11.60 16 18 C -0.14 -1.82 5.68 -27.88 -0.16 -1.97 16 19 C -0.06 -0.72 4.66 -27.88 -0.13 -0.85 16 20 C -0.14 -1.53 5.15 -104.48 -0.54 -2.07 16 21 C -0.06 -0.57 9.85 -39.31 -0.39 -0.96 16 22 C -0.18 -1.78 10.04 -39.28 -0.39 -2.17 16 23 C 0.30 3.50 7.74 -17.12 -0.13 3.36 16 24 O -0.48 -4.91 13.56 -18.72 -0.25 -5.17 16 25 N -0.50 -6.86 10.39 -13.33 -0.14 -6.99 16 26 C 0.13 1.64 10.85 -17.56 -0.19 1.45 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 31 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 32 H 0.03 0.76 6.90 -51.92 -0.36 0.40 16 33 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 34 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 35 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.39 6.32 7.17 -40.82 -0.29 6.02 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 40 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.40 1.93 9.06 45.56 0.41 2.34 16 44 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -33.81 369.08 -7.59 -41.39 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.01 Total: 6.19 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.66 Total: 5.73 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.29 Total: -58.98 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.17 Total: -16.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.81 -7.59 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.333 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds