Wall clock time and date at job start Tue Mar 31 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46716 * 2 1 4 4 C 1.53000 * 109.46826 * 119.99511 * 2 1 3 5 5 N 1.46505 * 109.46725 * 175.00024 * 4 2 1 6 6 C 1.46491 * 120.00145 * 270.00031 * 5 4 2 7 7 C 1.36940 * 119.99659 * 90.00646 * 5 4 2 8 8 H 1.07997 * 120.00539 * 23.60874 * 7 5 4 9 9 C 1.38812 * 119.99578 * 203.61348 * 7 5 4 10 10 N 1.31623 * 120.00358 * 11.32064 * 9 7 5 11 11 Si 1.86798 * 119.99875 * 191.31673 * 9 7 5 12 12 H 1.48501 * 109.47379 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47263 * 119.99806 * 11 9 7 14 14 H 1.48507 * 109.47458 * 239.99904 * 11 9 7 15 15 N 1.46494 * 109.47399 * 239.99776 * 2 1 3 16 16 C 1.34782 * 119.99945 * 85.00107 * 15 2 1 17 17 O 1.21285 * 120.00132 * 359.97438 * 16 15 2 18 18 C 1.50698 * 119.99875 * 180.02562 * 16 15 2 19 19 C 1.53000 * 109.47258 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47258 * 179.97438 * 19 18 16 21 21 C 1.38823 * 120.35937 * 90.00364 * 20 19 18 22 22 C 1.38377 * 118.48811 * 179.97438 * 21 20 19 23 23 C 1.38917 * 119.11180 * 359.97438 * 22 21 20 24 24 O 1.35674 * 119.68586 * 180.02562 * 23 22 21 25 25 N 1.32245 * 120.62776 * 0.02867 * 23 22 21 26 26 C 1.31968 * 121.65127 * 359.67990 * 25 23 22 27 27 H 1.09005 * 109.46941 * 60.00029 * 1 2 3 28 28 H 1.08996 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47087 * 300.00619 * 1 2 3 30 30 H 1.08994 * 109.47274 * 294.99924 * 4 2 1 31 31 H 1.09001 * 109.46932 * 55.00433 * 4 2 1 32 32 H 1.09008 * 109.47091 * 94.53478 * 6 5 4 33 33 H 1.09004 * 109.47495 * 214.53085 * 6 5 4 34 34 H 1.08999 * 109.47365 * 334.53271 * 6 5 4 35 35 H 0.97002 * 120.00122 * 180.02562 * 10 9 7 36 36 H 0.96999 * 119.99956 * 265.00584 * 15 2 1 37 37 H 1.08998 * 109.46988 * 299.99894 * 18 16 15 38 38 H 1.09002 * 109.47625 * 59.99601 * 18 16 15 39 39 H 1.08998 * 109.47310 * 300.00034 * 19 18 16 40 40 H 1.09002 * 109.46853 * 59.99465 * 19 18 16 41 41 H 1.08007 * 120.75317 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.44160 * 180.02562 * 22 21 20 43 43 H 0.96707 * 113.99921 * 89.99952 * 24 23 22 44 44 H 1.08000 * 119.58467 * 180.31072 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9918 0.5614 7 6 4.2798 0.1650 1.7241 8 1 3.8834 0.8072 2.4966 9 6 5.5799 0.3443 1.2720 10 7 5.9919 -0.2792 0.1885 11 14 6.7449 1.4708 2.2011 12 1 6.0434 2.0484 3.3757 13 1 7.9236 0.6934 2.6610 14 1 7.1937 2.5668 1.3051 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8583 1.1584 -2.4117 18 6 2.6491 -0.7289 -3.5876 19 6 2.7001 0.2541 -4.7590 20 6 3.2026 -0.4564 -5.9894 21 6 2.3115 -1.0768 -6.8544 22 6 2.8150 -1.7174 -7.9729 23 6 4.1869 -1.7176 -8.1913 24 8 4.6931 -2.3417 -9.2845 25 7 5.0041 -1.1153 -7.3439 26 6 4.5534 -0.4915 -6.2719 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7516 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2952 32 1 4.3533 -1.7641 -0.4801 33 1 5.0473 -2.2386 1.0889 34 1 3.4427 -2.8399 0.6071 35 1 6.9005 -0.1541 -0.1273 36 1 2.2491 -1.6318 -1.1525 37 1 3.6482 -1.1214 -3.3984 38 1 1.9762 -1.5507 -3.8325 39 1 1.7008 0.6462 -4.9481 40 1 3.3727 1.0762 -4.5144 41 1 1.2494 -1.0598 -6.6589 42 1 2.1502 -2.2099 -8.6670 43 1 4.7664 -1.7732 -10.0633 44 1 5.2504 -0.0063 -5.6047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754324486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:38 Heat of formation + Delta-G solvation = -54.824413 kcal Electronic energy + Delta-G solvation = -25194.368985 eV Core-core repulsion = 21532.446219 eV Total energy + Delta-G solvation = -3661.922766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50420 -40.65358 -38.33567 -37.96385 -35.75000 -35.04648 -33.22375 -32.96837 -31.87194 -30.05402 -27.95405 -27.38219 -25.90693 -24.69693 -23.61599 -22.73456 -21.64287 -21.08921 -19.77831 -18.75641 -18.12031 -17.95100 -17.10390 -16.95030 -16.70070 -16.24458 -15.99346 -15.52478 -15.33958 -15.19071 -14.70329 -14.51777 -14.24064 -14.18476 -14.07739 -13.71251 -13.33513 -13.07604 -13.02022 -12.88878 -12.81433 -12.66236 -12.53627 -12.49330 -12.27394 -12.01543 -11.99887 -11.80308 -11.67117 -10.88510 -10.71088 -10.61487 -10.39580 -9.82531 -9.74182 -8.69527 -7.80820 -5.26872 -0.01657 0.25333 1.43002 1.45872 1.53955 1.85170 2.44188 2.51812 2.58149 2.84585 3.33569 3.65411 3.73774 3.77871 3.90990 4.03304 4.04868 4.19982 4.27629 4.31960 4.46371 4.54006 4.57989 4.67179 4.76584 4.80122 4.86623 4.94625 4.95489 5.01955 5.03891 5.17406 5.24958 5.33889 5.38608 5.42958 5.60614 5.67002 5.78379 5.83971 6.36328 6.63833 6.78745 6.94301 7.19974 7.48764 7.91976 8.32409 9.21246 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003446 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.246119 B = 8124.480732 C = 9380.662505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.034 0.966 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.174 3.826 7 C -0.259 4.259 8 H 0.065 0.935 9 C -0.047 4.047 10 N -0.928 5.928 11 Si 0.956 3.044 12 H -0.269 1.269 13 H -0.291 1.291 14 H -0.299 1.299 15 N -0.697 5.697 16 C 0.509 3.491 17 O -0.595 6.595 18 C -0.124 4.124 19 C -0.048 4.048 20 C -0.137 4.137 21 C -0.050 4.050 22 C -0.175 4.175 23 C 0.286 3.714 24 O -0.495 6.495 25 N -0.536 5.536 26 C 0.112 3.888 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.014 0.986 33 H 0.009 0.991 34 H 0.036 0.964 35 H 0.244 0.756 36 H 0.403 0.597 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.418 0.582 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 -5.551 -14.396 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 H 0.053 0.947 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.029 3.971 7 C -0.389 4.389 8 H 0.083 0.917 9 C -0.243 4.243 10 N -0.574 5.574 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.227 1.227 15 N -0.346 5.346 16 C 0.297 3.703 17 O -0.477 6.477 18 C -0.164 4.164 19 C -0.087 4.087 20 C -0.139 4.139 21 C -0.075 4.075 22 C -0.196 4.196 23 C 0.107 3.893 24 O -0.305 6.305 25 N -0.255 5.255 26 C -0.044 4.044 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.188 0.812 42 H 0.187 0.813 43 H 0.279 0.721 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.259 -5.288 -14.322 18.970 hybrid contribution 0.780 0.908 0.310 1.237 sum -10.478 -4.380 -14.013 18.037 Atomic orbital electron populations 1.22005 0.93705 1.02774 1.01836 1.21610 0.93990 0.96314 0.86612 0.94732 1.21371 0.83223 0.99215 0.94731 1.44080 1.00888 1.20422 1.68024 1.20633 0.94200 0.86082 0.96155 1.19475 0.95070 1.10555 1.13843 0.91737 1.25638 1.00385 1.00837 0.97400 1.70175 1.16826 1.47119 1.23309 0.85364 0.79349 0.78457 0.78245 1.19312 1.21745 1.22711 1.45824 1.65703 1.14020 1.09076 1.21081 0.76549 0.86909 0.85802 1.90622 1.53058 1.17848 1.86200 1.21601 1.03698 0.99790 0.91317 1.20088 1.02784 0.96265 0.89535 1.20865 0.94455 1.00532 0.98029 1.21794 1.01700 0.92542 0.91509 1.22357 0.94538 1.01976 1.00719 1.19535 0.88486 0.91999 0.89240 1.84737 1.86299 1.38919 1.20523 1.67131 1.42351 1.10185 1.05832 1.22555 0.94422 0.94740 0.92685 0.93981 0.90574 0.90843 0.92114 0.90644 0.96742 0.97239 0.94568 0.94688 0.76134 0.89345 0.86025 0.89238 0.91981 0.81153 0.81259 0.72125 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.48 71.98 0.68 -3.21 16 2 C 0.12 4.37 2.88 44.99 0.13 4.50 16 3 H 0.03 1.58 7.58 -2.38 -0.02 1.56 16 4 C 0.14 5.11 5.33 86.38 0.46 5.57 16 5 N -0.61 -28.51 2.78 -726.94 -2.02 -30.53 16 6 C 0.17 7.79 7.61 127.77 0.97 8.77 16 7 C -0.26 -13.95 9.66 84.03 0.81 -13.14 16 8 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 9 C -0.05 -2.62 5.13 84.86 0.44 -2.18 16 10 N -0.93 -53.75 10.66 21.65 0.23 -53.52 16 11 Si 0.96 45.82 29.57 68.60 2.03 47.85 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 15 N -0.70 -23.55 4.41 -442.52 -1.95 -25.50 16 16 C 0.51 17.90 7.79 87.66 0.68 18.58 16 17 O -0.60 -25.58 15.65 -3.05 -0.05 -25.63 16 18 C -0.12 -3.22 5.68 29.85 0.17 -3.05 16 19 C -0.05 -1.18 4.66 29.85 0.14 -1.04 16 20 C -0.14 -2.96 5.15 -19.77 -0.10 -3.07 16 21 C -0.05 -0.81 9.85 22.44 0.22 -0.59 16 22 C -0.18 -2.86 10.04 22.47 0.23 -2.63 16 23 C 0.29 6.35 7.74 84.79 0.66 7.01 16 24 O -0.49 -9.31 13.56 -89.91 -1.22 -10.53 16 25 N -0.54 -14.76 10.39 -308.96 -3.21 -17.97 16 26 C 0.11 2.90 10.85 84.63 0.92 3.81 16 27 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 31 H 0.08 2.24 7.86 -2.39 -0.02 2.22 16 32 H 0.01 0.69 6.90 -2.38 -0.02 0.68 16 33 H 0.01 0.45 7.30 -2.39 -0.02 0.44 16 34 H 0.04 1.29 7.84 -2.39 -0.02 1.28 16 35 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.40 12.12 7.17 -92.71 -0.66 11.46 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.03 8.05 -2.39 -0.02 2.01 16 40 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 41 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.42 3.44 9.06 -74.05 -0.67 2.77 16 44 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -75.45 369.08 -0.11 -75.56 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.32 Total: 20.96 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 6.40 Total: 19.31 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -6.95 Total: -127.52 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.27 Total: -36.17 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.45 -0.11 -75.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.734 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds