Wall clock time and date at job start Tue Mar 31 2020 03:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47004 * 2 1 4 4 N 1.28525 * 124.44479 * 270.02370 * 3 2 1 5 5 C 1.31127 * 109.06020 * 179.69419 * 4 3 2 6 6 C 1.50699 * 127.11239 * 180.29075 * 5 4 3 7 7 C 1.40924 * 105.77637 * 0.43436 * 5 4 3 8 8 C 1.47803 * 127.23638 * 179.84253 * 7 5 4 9 9 O 1.21560 * 120.00128 * 359.70079 * 8 7 5 10 10 N 1.34774 * 120.00200 * 179.70636 * 8 7 5 11 11 C 1.47024 * 125.64537 * 0.02562 * 10 8 7 12 12 C 1.54323 * 107.26968 * 181.02683 * 11 10 8 13 13 C 1.55155 * 102.94304 * 22.19460 * 12 11 10 14 14 H 1.08995 * 111.00648 * 82.61285 * 13 12 11 15 15 N 1.46502 * 111.00240 * 206.42554 * 13 12 11 16 16 C 1.46505 * 120.00253 * 60.00212 * 15 13 12 17 17 C 1.36936 * 120.00055 * 240.00019 * 15 13 12 18 18 H 1.08000 * 119.99987 * 23.24077 * 17 15 13 19 19 C 1.38819 * 120.00003 * 203.25002 * 17 15 13 20 20 N 1.31620 * 119.99976 * 13.76210 * 19 17 15 21 21 Si 1.86797 * 119.99868 * 193.76584 * 19 17 15 22 22 H 1.48505 * 109.47138 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47332 * 119.99534 * 21 19 17 24 24 H 1.48508 * 109.47051 * 239.99987 * 21 19 17 25 25 C 1.47426 * 125.64985 * 179.71859 * 10 8 7 26 26 N 1.28591 * 124.44647 * 90.00425 * 3 2 1 27 27 H 1.08999 * 109.47404 * 59.99893 * 1 2 3 28 28 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47130 * 300.00313 * 1 2 3 30 30 H 1.09003 * 109.47130 * 239.99687 * 2 1 3 31 31 H 1.09005 * 109.46749 * 119.99873 * 2 1 3 32 32 H 1.09004 * 109.47290 * 270.17074 * 6 5 4 33 33 H 1.09003 * 109.47161 * 30.16541 * 6 5 4 34 34 H 1.08996 * 109.47224 * 150.16984 * 6 5 4 35 35 H 1.08998 * 109.88342 * 300.44087 * 11 10 8 36 36 H 1.08996 * 109.88161 * 61.45142 * 11 10 8 37 37 H 1.09000 * 110.72119 * 140.55615 * 12 11 10 38 38 H 1.09004 * 110.71879 * 263.64983 * 12 11 10 39 39 H 1.08996 * 109.47378 * 95.15525 * 16 15 13 40 40 H 1.08997 * 109.46987 * 215.15736 * 16 15 13 41 41 H 1.09005 * 109.46501 * 335.15275 * 16 15 13 42 42 H 0.97000 * 119.99996 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.36254 * 274.74185 * 25 10 8 44 44 H 1.08996 * 110.36920 * 37.05982 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2601 2.0667 -1.0599 5 6 2.6754 3.2608 -0.7120 6 6 3.0655 4.3909 -1.6295 7 6 2.6849 3.2678 0.6972 8 6 3.0789 4.3830 1.5834 9 8 3.4507 5.4371 1.1054 10 7 3.0263 4.2314 2.9216 11 6 2.5985 3.0162 3.6300 12 6 2.6768 3.3156 5.1418 13 6 2.6029 4.8645 5.1936 14 1 1.5701 5.2085 5.1382 15 7 3.2619 5.3817 6.3955 16 6 4.6834 5.1117 6.6253 17 6 2.5492 6.1177 7.3041 18 1 1.4755 6.0150 7.3589 19 6 3.2068 6.9958 8.1547 20 7 4.4584 7.3277 7.9185 21 14 2.3154 7.7063 9.6346 22 1 0.9274 7.1799 9.6761 23 1 3.0301 7.3173 10.8767 24 1 2.2797 9.1871 9.5269 25 6 3.3941 5.2544 3.9174 26 7 2.2608 2.0669 1.0604 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 4.1298 4.3247 -1.8555 33 1 2.4927 4.3223 -2.5544 34 1 2.8561 5.3432 -1.1423 35 1 1.5737 2.7675 3.3540 36 1 3.2611 2.1880 3.3788 37 1 1.8314 2.8714 5.6673 38 1 3.6187 2.9576 5.5575 39 1 5.2763 5.9496 6.2585 40 1 4.8604 4.9810 7.6928 41 1 4.9709 4.2036 6.0954 42 1 4.9180 7.9410 8.5131 43 1 4.4666 5.2277 4.1101 44 1 3.0942 6.2441 3.5731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980554194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:57 Heat of formation + Delta-G solvation = 104.526687 kcal Electronic energy + Delta-G solvation = -25711.246381 eV Core-core repulsion = 22088.526348 eV Total energy + Delta-G solvation = -3622.720033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.74430 -39.56772 -37.39041 -35.29641 -34.82408 -33.12875 -31.75092 -31.34310 -29.74517 -28.35193 -27.71768 -26.06573 -25.37454 -23.51376 -22.54061 -22.10576 -21.09040 -19.52158 -19.24158 -17.43641 -17.07334 -16.90300 -16.64596 -15.75190 -15.33254 -14.81356 -14.65338 -14.06305 -14.03593 -13.55123 -13.37292 -13.26307 -12.93263 -12.80416 -12.69661 -12.48488 -12.40652 -12.31157 -11.91719 -11.85141 -11.56564 -11.47325 -11.00121 -10.90118 -10.73380 -10.49825 -10.45723 -10.38038 -10.22137 -9.93617 -9.84913 -9.75717 -9.30562 -8.59473 -8.28230 -6.79679 -5.76112 -3.23911 1.30325 1.84632 1.96681 3.15128 3.36897 3.38799 3.44393 3.46346 3.77763 4.39685 4.40344 4.47175 4.64510 4.66497 4.79268 5.07344 5.10705 5.21907 5.29686 5.39623 5.42641 5.57661 5.58104 5.62590 5.64308 5.70144 5.85848 5.88711 5.95923 6.09183 6.21750 6.34214 6.43633 6.44945 6.57704 6.64764 6.78178 6.90279 7.33080 7.70255 7.75709 7.78670 8.03879 8.32512 8.36615 9.18738 9.81158 10.30255 11.28139 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.003140 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.345787 B = 8916.162289 C = 9577.878332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.147 5.147 4 N -0.296 5.296 5 C 0.059 3.941 6 C -0.068 4.068 7 C -0.038 4.038 8 C 0.615 3.385 9 O -0.532 6.532 10 N -0.598 5.598 11 C 0.114 3.886 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.079 0.921 15 N -0.584 5.584 16 C 0.158 3.842 17 C -0.261 4.261 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.089 3.911 26 N -0.244 5.244 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -15.622 -16.096 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.049 5.049 4 N -0.137 5.137 5 C -0.105 4.105 6 C -0.126 4.126 7 C -0.201 4.201 8 C 0.400 3.600 9 O -0.408 6.408 10 N -0.331 5.331 11 C -0.010 4.010 12 C -0.195 4.195 13 C 0.063 3.937 14 H 0.097 0.903 15 N -0.304 5.304 16 C 0.014 3.986 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.035 4.035 26 N -0.091 5.091 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.505 -16.213 -16.258 23.611 hybrid contribution -0.076 1.006 0.831 1.307 sum -5.581 -15.207 -15.428 22.370 Atomic orbital electron populations 1.22191 0.92943 1.03964 1.03866 1.22051 0.96178 0.74224 1.05968 1.48138 1.44078 1.13356 0.99329 1.73898 1.19156 1.05186 1.15480 1.23257 1.00814 0.93719 0.92702 1.20222 1.01885 0.93826 0.96689 1.22979 1.09247 0.93642 0.94220 1.16242 0.78493 0.84961 0.80309 1.90779 1.48612 1.26886 1.74503 1.48326 1.63756 1.16766 1.04215 1.22029 0.99697 0.86676 0.92555 1.23255 1.02868 1.00540 0.92808 1.21513 0.96069 0.90731 0.85431 0.90303 1.43869 1.07603 1.60240 1.18727 1.20817 0.83890 0.95007 0.98893 1.19258 0.91656 1.16832 1.11289 0.91157 1.25064 0.96600 0.97207 1.00519 1.70082 1.10921 1.36069 1.37596 0.86167 0.79011 0.78582 0.82647 1.20254 1.21585 1.21677 1.23203 1.00746 0.91268 0.88279 1.74496 1.14771 1.04537 1.15338 0.91396 0.89480 0.91195 0.87267 0.87124 0.90159 0.90843 0.88516 0.91581 0.91855 0.90657 0.90625 0.94811 0.93937 0.97910 0.93661 0.91043 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.13 0.88 7.24 -4.05 -0.03 0.85 16 3 N -0.15 -1.70 3.94 -10.62 -0.04 -1.74 16 4 N -0.30 -3.82 12.01 33.92 0.41 -3.41 16 5 C 0.06 0.82 7.39 -81.88 -0.61 0.22 16 6 C -0.07 -0.77 10.00 36.01 0.36 -0.41 16 7 C -0.04 -0.59 7.03 -82.68 -0.58 -1.17 16 8 C 0.61 10.90 7.86 -12.35 -0.10 10.81 16 9 O -0.53 -10.54 15.46 5.31 0.08 -10.45 16 10 N -0.60 -10.42 3.32 -171.50 -0.57 -10.99 16 11 C 0.11 1.70 5.56 -3.06 -0.02 1.68 16 12 C -0.15 -2.53 6.49 -24.90 -0.16 -2.69 16 13 C 0.17 3.47 3.55 -65.66 -0.23 3.24 16 14 H 0.08 1.60 7.96 -51.93 -0.41 1.19 16 15 N -0.58 -14.19 2.96 -170.89 -0.51 -14.70 16 16 C 0.16 3.78 7.56 59.85 0.45 4.24 16 17 C -0.26 -7.00 9.60 -15.06 -0.14 -7.14 16 18 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 19 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -25.96 10.77 55.49 0.60 -25.36 16 21 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 C 0.09 1.74 6.46 -2.41 -0.02 1.73 16 26 N -0.24 -3.33 9.73 33.42 0.33 -3.01 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.22 6.77 -51.93 -0.35 0.87 16 35 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 36 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.28 6.47 -51.93 -0.34 0.94 16 39 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 40 H 0.04 1.09 7.38 -51.93 -0.38 0.70 16 41 H 0.00 0.05 6.37 -51.93 -0.33 -0.28 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 1.48 6.96 -51.93 -0.36 1.12 16 44 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -32.27 357.21 -6.84 -39.11 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.71 Total: -2.18 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -0.78 Total: 10.84 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.21 Total: -59.20 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.27 -6.84 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980554194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.636 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds