Wall clock time and date at job start Tue Mar 31 2020 03:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47004 * 2 1 4 4 N 1.28525 * 124.44479 * 270.02370 * 3 2 1 5 5 C 1.31127 * 109.06020 * 179.69419 * 4 3 2 6 6 C 1.50699 * 127.11239 * 180.29075 * 5 4 3 7 7 C 1.40924 * 105.77637 * 0.43436 * 5 4 3 8 8 C 1.47803 * 127.23638 * 179.84253 * 7 5 4 9 9 O 1.21560 * 120.00128 * 359.70079 * 8 7 5 10 10 N 1.34774 * 120.00200 * 179.70636 * 8 7 5 11 11 C 1.47024 * 125.64537 * 0.02562 * 10 8 7 12 12 C 1.54323 * 107.26968 * 181.02683 * 11 10 8 13 13 C 1.55155 * 102.94304 * 22.19460 * 12 11 10 14 14 H 1.08995 * 111.00648 * 82.61285 * 13 12 11 15 15 N 1.46502 * 111.00240 * 206.42554 * 13 12 11 16 16 C 1.46505 * 120.00253 * 60.00212 * 15 13 12 17 17 C 1.36936 * 120.00055 * 240.00019 * 15 13 12 18 18 H 1.08000 * 119.99987 * 23.24077 * 17 15 13 19 19 C 1.38819 * 120.00003 * 203.25002 * 17 15 13 20 20 N 1.31620 * 119.99976 * 13.76210 * 19 17 15 21 21 Si 1.86797 * 119.99868 * 193.76584 * 19 17 15 22 22 H 1.48505 * 109.47138 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47332 * 119.99534 * 21 19 17 24 24 H 1.48508 * 109.47051 * 239.99987 * 21 19 17 25 25 C 1.47426 * 125.64985 * 179.71859 * 10 8 7 26 26 N 1.28591 * 124.44647 * 90.00425 * 3 2 1 27 27 H 1.08999 * 109.47404 * 59.99893 * 1 2 3 28 28 H 1.09002 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47130 * 300.00313 * 1 2 3 30 30 H 1.09003 * 109.47130 * 239.99687 * 2 1 3 31 31 H 1.09005 * 109.46749 * 119.99873 * 2 1 3 32 32 H 1.09004 * 109.47290 * 270.17074 * 6 5 4 33 33 H 1.09003 * 109.47161 * 30.16541 * 6 5 4 34 34 H 1.08996 * 109.47224 * 150.16984 * 6 5 4 35 35 H 1.08998 * 109.88342 * 300.44087 * 11 10 8 36 36 H 1.08996 * 109.88161 * 61.45142 * 11 10 8 37 37 H 1.09000 * 110.72119 * 140.55615 * 12 11 10 38 38 H 1.09004 * 110.71879 * 263.64983 * 12 11 10 39 39 H 1.08996 * 109.47378 * 95.15525 * 16 15 13 40 40 H 1.08997 * 109.46987 * 215.15736 * 16 15 13 41 41 H 1.09005 * 109.46501 * 335.15275 * 16 15 13 42 42 H 0.97000 * 119.99996 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.36254 * 274.74185 * 25 10 8 44 44 H 1.08996 * 110.36920 * 37.05982 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2601 2.0667 -1.0599 5 6 2.6754 3.2608 -0.7120 6 6 3.0655 4.3909 -1.6295 7 6 2.6849 3.2678 0.6972 8 6 3.0789 4.3830 1.5834 9 8 3.4507 5.4371 1.1054 10 7 3.0263 4.2314 2.9216 11 6 2.5985 3.0162 3.6300 12 6 2.6768 3.3156 5.1418 13 6 2.6029 4.8645 5.1936 14 1 1.5701 5.2085 5.1382 15 7 3.2619 5.3817 6.3955 16 6 4.6834 5.1117 6.6253 17 6 2.5492 6.1177 7.3041 18 1 1.4755 6.0150 7.3589 19 6 3.2068 6.9958 8.1547 20 7 4.4584 7.3277 7.9185 21 14 2.3154 7.7063 9.6346 22 1 0.9274 7.1799 9.6761 23 1 3.0301 7.3173 10.8767 24 1 2.2797 9.1871 9.5269 25 6 3.3941 5.2544 3.9174 26 7 2.2608 2.0669 1.0604 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 4.1298 4.3247 -1.8555 33 1 2.4927 4.3223 -2.5544 34 1 2.8561 5.3432 -1.1423 35 1 1.5737 2.7675 3.3540 36 1 3.2611 2.1880 3.3788 37 1 1.8314 2.8714 5.6673 38 1 3.6187 2.9576 5.5575 39 1 5.2763 5.9496 6.2585 40 1 4.8604 4.9810 7.6928 41 1 4.9709 4.2036 6.0954 42 1 4.9180 7.9410 8.5131 43 1 4.4666 5.2277 4.1101 44 1 3.0942 6.2441 3.5731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980554194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:57 Heat of formation + Delta-G solvation = 83.407654 kcal Electronic energy + Delta-G solvation = -25712.162171 eV Core-core repulsion = 22088.526348 eV Total energy + Delta-G solvation = -3623.635823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.74457 -40.99768 -38.92416 -36.60120 -36.05815 -34.23274 -33.35010 -32.34832 -31.30819 -29.65561 -28.84245 -28.05597 -26.55244 -24.88443 -23.88157 -23.24579 -22.04949 -21.01357 -20.69310 -18.94023 -18.38526 -18.16763 -17.76747 -17.34822 -16.67518 -16.37924 -15.67078 -15.40323 -15.11982 -14.88971 -14.79245 -14.40299 -14.29960 -14.22853 -13.90636 -13.78153 -13.44919 -13.40326 -13.11089 -13.01341 -12.79770 -12.60402 -12.53904 -12.40190 -12.31297 -12.18634 -12.04140 -11.98291 -11.76696 -11.48624 -11.34170 -11.24276 -10.64225 -10.30543 -9.71203 -8.78985 -7.82859 -5.33225 0.17981 0.80126 1.16782 1.48394 1.49821 1.60223 1.83078 2.08131 2.51892 2.76448 3.28582 3.48957 3.53893 3.71886 3.92668 3.93340 3.95567 4.05219 4.20274 4.24488 4.33972 4.42220 4.43748 4.57118 4.69129 4.72920 4.74042 4.79803 4.80875 4.89418 4.95940 5.00128 5.16731 5.17543 5.20403 5.27989 5.30042 5.42565 5.59220 5.66260 5.71723 6.32045 6.38938 6.87629 7.08996 7.13970 7.83850 8.28572 9.19893 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.003140 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.345787 B = 8916.162289 C = 9577.878332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.130 5.130 4 N -0.296 5.296 5 C 0.050 3.950 6 C -0.065 4.065 7 C -0.067 4.067 8 C 0.613 3.387 9 O -0.562 6.562 10 N -0.601 5.601 11 C 0.123 3.877 12 C -0.138 4.138 13 C 0.167 3.833 14 H 0.075 0.925 15 N -0.599 5.599 16 C 0.176 3.824 17 C -0.267 4.267 18 H 0.076 0.924 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.295 1.295 25 C 0.101 3.899 26 N -0.240 5.240 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.003 0.997 40 H 0.018 0.982 41 H 0.034 0.966 42 H 0.248 0.752 43 H 0.057 0.943 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 -18.474 -16.943 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 N -0.035 5.035 4 N -0.138 5.138 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.227 4.227 8 C 0.400 3.600 9 O -0.440 6.440 10 N -0.333 5.333 11 C 0.001 3.999 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.093 0.907 15 N -0.320 5.320 16 C 0.031 3.969 17 C -0.397 4.397 18 H 0.094 0.906 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.024 4.024 26 N -0.090 5.090 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.021 0.979 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.055 -19.104 -17.133 26.614 hybrid contribution 0.329 1.751 0.975 2.031 sum -6.726 -17.353 -16.158 24.647 Atomic orbital electron populations 1.22174 0.91991 1.05609 1.02560 1.22676 0.96922 0.71934 1.08253 1.48794 1.41872 1.14331 0.98527 1.73921 1.19238 1.04868 1.15798 1.23569 1.00690 0.94580 0.92432 1.20249 1.02789 0.92340 0.97028 1.22596 1.11844 0.93852 0.94453 1.16547 0.77784 0.85297 0.80370 1.90754 1.49882 1.28335 1.75054 1.48327 1.63934 1.16919 1.04104 1.22082 1.00895 0.85895 0.91053 1.23104 1.03678 0.96900 0.94112 1.21640 0.95327 0.93273 0.83930 0.90651 1.44035 1.07622 1.60350 1.19996 1.20513 0.83720 0.95121 0.97496 1.19619 0.92134 1.16372 1.11571 0.90647 1.25834 0.97405 0.98111 1.03244 1.70249 1.12387 1.37067 1.38534 0.85160 0.78500 0.77264 0.79223 1.18775 1.21738 1.22260 1.22810 0.99683 0.91012 0.88914 1.74416 1.14479 1.03990 1.16084 0.92508 0.86363 0.92611 0.84914 0.85021 0.89303 0.88645 0.90192 0.90068 0.90278 0.88677 0.90788 0.97918 0.96298 0.94750 0.94230 0.92460 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.24 71.98 0.74 -0.55 16 2 C 0.12 1.11 7.24 86.38 0.63 1.74 16 3 N -0.13 -2.66 3.94 -187.50 -0.74 -3.40 16 4 N -0.30 -6.99 12.01 -46.59 -0.56 -7.55 16 5 C 0.05 1.34 7.39 43.32 0.32 1.66 16 6 C -0.07 -1.45 10.00 71.24 0.71 -0.74 16 7 C -0.07 -2.00 7.03 42.24 0.30 -1.70 16 8 C 0.61 21.77 7.86 86.77 0.68 22.45 16 9 O -0.56 -22.91 15.46 -3.91 -0.06 -22.97 16 10 N -0.60 -20.65 3.32 -814.79 -2.71 -23.36 16 11 C 0.12 3.40 5.56 86.73 0.48 3.88 16 12 C -0.14 -4.22 6.49 31.78 0.21 -4.01 16 13 C 0.17 6.65 3.55 46.46 0.16 6.81 16 14 H 0.08 3.03 7.96 -2.39 -0.02 3.02 16 15 N -0.60 -29.30 2.96 -694.57 -2.05 -31.35 16 16 C 0.18 8.58 7.56 127.77 0.97 9.55 16 17 C -0.27 -14.37 9.60 84.04 0.81 -13.57 16 18 H 0.08 3.90 7.87 -2.91 -0.02 3.88 16 19 C -0.05 -2.80 5.08 84.86 0.43 -2.37 16 20 N -0.94 -55.37 10.77 21.65 0.23 -55.14 16 21 Si 0.97 44.67 29.58 68.60 2.03 46.70 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 25 C 0.10 4.02 6.46 86.93 0.56 4.58 16 26 N -0.24 -6.02 9.73 -48.17 -0.47 -6.49 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.05 6.77 -2.39 -0.02 2.04 16 35 H 0.08 2.05 7.68 -2.39 -0.02 2.03 16 36 H 0.08 1.99 7.79 -2.39 -0.02 1.98 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.07 2.32 6.47 -2.38 -0.02 2.30 16 39 H 0.00 0.14 7.33 -2.39 -0.02 0.12 16 40 H 0.02 0.97 7.38 -2.39 -0.02 0.95 16 41 H 0.03 1.42 6.37 -2.38 -0.02 1.40 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.06 2.44 6.96 -2.39 -0.02 2.42 16 44 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 Total: -1.00 -71.24 357.21 3.66 -67.58 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.00 Total: 8.24 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.99 Total: 27.74 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -6.30 Total: -127.29 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.06 Total: -22.97 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.24 3.66 -67.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980554194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.986 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds