Wall clock time and date at job start Tue Mar 31 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47116 * 269.99552 * 3 2 1 5 5 H 1.48503 * 109.47216 * 29.99686 * 3 2 1 6 6 H 1.48506 * 109.47437 * 149.99513 * 3 2 1 7 7 C 1.38811 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00225 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00114 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.46096 * 155.00270 * 10 9 7 12 12 C 1.53200 * 109.31249 * 181.38494 * 11 10 9 13 13 N 1.46926 * 108.77135 * 305.36172 * 12 11 10 14 14 C 1.34774 * 120.62900 * 233.58270 * 13 12 11 15 15 O 1.21276 * 120.00289 * 183.50874 * 14 13 12 16 16 C 1.50700 * 119.99960 * 3.51455 * 14 13 12 17 17 C 1.54141 * 110.74876 * 202.79520 * 16 14 13 18 18 C 1.55165 * 102.88650 * 98.15450 * 17 16 14 19 19 C 1.54839 * 101.65426 * 36.16504 * 18 17 16 20 20 N 1.47952 * 105.15305 * 323.26736 * 19 18 17 21 21 C 1.47867 * 109.45367 * 140.67676 * 20 19 18 22 22 C 1.54833 * 105.13660 * 219.32559 * 21 20 19 23 23 C 1.54136 * 110.74914 * 81.34954 * 16 14 13 24 24 C 1.46918 * 118.73968 * 53.86138 * 13 12 11 25 25 C 1.53042 * 109.45523 * 275.06737 * 10 9 7 26 26 H 0.97005 * 120.00298 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00080 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.44898 * 35.03052 * 10 9 7 29 29 H 1.09002 * 109.50240 * 61.43309 * 11 10 9 30 30 H 1.08998 * 109.49720 * 301.33401 * 11 10 9 31 31 H 1.08999 * 109.58252 * 185.57623 * 12 11 10 32 32 H 1.08994 * 109.58830 * 65.15245 * 12 11 10 33 33 H 1.09001 * 110.72381 * 339.81022 * 17 16 14 34 34 H 1.08993 * 110.88874 * 216.58023 * 17 16 14 35 35 H 1.08994 * 110.98731 * 278.07022 * 18 17 16 36 36 H 1.08995 * 110.98366 * 154.25654 * 18 17 16 37 37 H 1.08999 * 110.32574 * 82.22385 * 19 18 17 38 38 H 1.09002 * 110.31489 * 204.32872 * 19 18 17 39 39 H 1.09002 * 110.23065 * 100.43250 * 21 20 19 40 40 H 1.08998 * 110.43446 * 338.31872 * 21 20 19 41 41 H 1.09009 * 110.99030 * 278.64777 * 22 21 20 42 42 H 1.09000 * 110.99578 * 154.83417 * 22 21 20 43 43 H 1.09004 * 110.72967 * 20.18986 * 23 16 14 44 44 H 1.09001 * 110.73492 * 143.30954 * 23 16 14 45 45 H 1.09003 * 109.58589 * 65.92582 * 24 13 12 46 46 H 1.09003 * 109.59000 * 186.34517 * 24 13 12 47 47 H 1.09001 * 109.49995 * 298.56562 * 25 10 9 48 48 H 1.09006 * 109.49932 * 58.66599 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.1798 -4.7519 0.6112 12 6 1.9614 -6.0692 0.6425 13 7 2.4419 -6.3662 -0.7139 14 6 2.1744 -7.5537 -1.2924 15 8 2.6299 -7.8116 -2.3864 16 6 1.3092 -8.5611 -0.5800 17 6 1.5852 -9.9847 -1.1026 18 6 2.5629 -10.5587 -0.0431 19 6 2.0175 -9.9264 1.2608 20 7 1.5766 -8.5673 0.8767 21 6 0.3182 -8.2404 1.5809 22 6 -0.5409 -7.4795 0.5415 23 6 -0.1841 -8.2293 -0.7693 24 6 3.2247 -5.3465 -1.4251 25 6 2.4243 -4.0352 -1.4353 26 1 -0.4851 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.9678 -3.5501 0.5923 29 1 0.2813 -4.8763 0.0069 30 1 0.9000 -4.4708 1.6265 31 1 1.3089 -6.8731 0.9832 32 1 2.8110 -5.9741 1.3185 33 1 2.0572 -9.9504 -2.0845 34 1 0.6669 -10.5707 -1.1377 35 1 3.5846 -10.2326 -0.2376 36 1 2.5023 -11.6462 -0.0048 37 1 1.1747 -10.5053 1.6386 38 1 2.8049 -9.8706 2.0125 39 1 0.5224 -7.6040 2.4419 40 1 -0.1891 -9.1521 1.8966 41 1 -0.2469 -6.4314 0.4842 42 1 -1.6028 -7.5737 0.7684 43 1 -0.3291 -7.5831 -1.6351 44 1 -0.7727 -9.1415 -0.8677 45 1 4.1754 -5.1936 -0.9142 46 1 3.4062 -5.6734 -2.4490 47 1 1.5140 -4.1663 -2.0204 48 1 3.0303 -3.2439 -1.8767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996771663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:18 Heat of formation + Delta-G solvation = 22.759713 kcal Electronic energy + Delta-G solvation = -27572.078212 eV Core-core repulsion = 24049.352840 eV Total energy + Delta-G solvation = -3522.725372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64294 -38.66305 -37.39376 -34.78577 -33.99227 -31.93595 -31.64640 -30.55555 -29.42939 -28.24557 -25.88539 -24.74888 -23.41146 -22.56795 -22.03981 -21.32379 -20.94042 -19.73595 -18.49343 -17.23512 -16.90836 -16.67338 -15.84309 -15.39808 -14.76869 -14.72104 -14.46655 -13.95514 -13.84887 -13.61309 -13.53406 -13.30572 -13.14020 -12.91508 -12.62897 -12.29365 -12.10861 -11.80412 -11.70444 -11.60188 -11.37004 -11.23383 -11.13603 -10.96708 -10.88958 -10.78656 -10.67205 -10.58331 -10.29187 -10.19367 -9.80559 -9.70624 -9.62446 -8.88494 -8.55713 -8.28383 -6.94546 -5.75960 -3.04410 2.72488 3.26774 3.44096 3.49474 3.50738 3.61329 4.20199 4.23002 4.48877 4.59972 4.69317 4.71018 4.80759 4.84945 5.08380 5.20227 5.28765 5.35152 5.41550 5.43998 5.49328 5.53023 5.57945 5.63295 5.63657 5.67751 5.71934 5.77103 5.80635 5.87830 5.91845 5.95853 6.00056 6.08389 6.24807 6.35270 6.42918 6.47106 6.50813 6.61805 6.66765 6.74502 7.03469 7.11385 7.70955 7.73723 8.40709 8.42787 9.53940 10.11915 10.46777 11.46770 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.027022 B = 0.003615 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.953516 B = 7742.837512 C = 8151.080870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.146 4.146 12 C 0.075 3.925 13 N -0.586 5.586 14 C 0.541 3.459 15 O -0.556 6.556 16 C 0.069 3.931 17 C -0.126 4.126 18 C -0.131 4.131 19 C 0.028 3.972 20 N -0.497 5.497 21 C 0.023 3.977 22 C -0.159 4.159 23 C -0.125 4.125 24 C 0.109 3.891 25 C -0.147 4.147 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -22.739 3.329 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.185 4.185 12 C -0.047 4.047 13 N -0.316 5.316 14 C 0.328 3.672 15 O -0.435 6.435 16 C -0.023 4.023 17 C -0.164 4.164 18 C -0.169 4.169 19 C -0.099 4.099 20 N -0.222 5.222 21 C -0.104 4.104 22 C -0.197 4.197 23 C -0.163 4.163 24 C -0.014 4.014 25 C -0.188 4.188 26 H 0.064 0.936 27 H 0.216 0.784 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.160 0.840 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.152 -22.297 2.942 22.519 hybrid contribution -0.433 0.588 -0.210 0.760 sum 0.719 -21.709 2.732 21.892 Atomic orbital electron populations 1.69658 1.05104 1.25591 1.57870 1.24725 0.95492 0.97639 1.03103 0.86214 0.78673 0.83951 0.77511 1.21773 1.21824 1.20766 1.19249 0.90991 0.84156 1.42463 0.91214 1.42442 1.05727 0.99777 1.88544 1.20172 0.94393 0.85942 0.92571 1.22364 0.99167 0.95212 1.01744 1.23056 1.00161 0.99111 0.82388 1.47952 1.52541 1.14268 1.16870 1.19904 0.80017 0.82146 0.85146 1.90641 1.53279 1.78107 1.21453 1.22442 0.95249 0.95608 0.89046 1.22812 1.00046 0.92545 1.01037 1.22766 0.99936 1.00127 0.94096 1.23376 1.00154 0.88362 0.98013 1.65918 1.28059 1.25298 1.02962 1.23341 0.88986 1.00070 0.97952 1.23426 1.00537 1.02063 0.93639 1.22836 0.92728 1.01377 0.99407 1.21808 0.93936 0.88057 0.97618 1.22714 0.99932 0.94881 1.01310 0.93569 0.78378 0.93535 0.91961 0.90805 0.84006 0.92138 0.88724 0.90673 0.90630 0.90607 0.92746 0.89790 0.88917 0.92315 0.87899 0.90048 0.90143 0.90175 0.91994 0.90006 0.92464 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.94 5.12 -53.39 -0.27 -18.21 16 10 C 0.18 3.52 2.73 -67.89 -0.19 3.33 16 11 C -0.15 -2.32 4.62 -26.61 -0.12 -2.44 16 12 C 0.08 1.03 5.01 -3.71 -0.02 1.01 16 13 N -0.59 -8.94 2.97 -172.50 -0.51 -9.45 16 14 C 0.54 8.32 6.63 -10.99 -0.07 8.25 16 15 O -0.56 -10.17 15.02 5.56 0.08 -10.09 16 16 C 0.07 0.80 0.76 -130.90 -0.10 0.70 16 17 C -0.13 -1.29 5.98 -24.99 -0.15 -1.43 16 18 C -0.13 -1.14 7.07 -24.62 -0.17 -1.32 16 19 C 0.03 0.23 6.72 -2.27 -0.02 0.22 16 20 N -0.50 -5.01 3.46 -214.73 -0.74 -5.75 16 21 C 0.02 0.20 5.55 -2.33 -0.01 0.18 16 22 C -0.16 -1.49 6.40 -24.62 -0.16 -1.65 16 23 C -0.12 -1.28 6.03 -24.99 -0.15 -1.43 16 24 C 0.11 1.77 6.45 -3.49 -0.02 1.75 16 25 C -0.15 -2.73 5.67 -26.38 -0.15 -2.88 16 26 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 27 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 28 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.06 1.00 6.65 -51.93 -0.35 0.66 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.14 1.66 0.64 -66.88 -0.04 1.61 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.15 6.81 -51.93 -0.35 0.80 16 34 H 0.07 0.63 7.31 -51.93 -0.38 0.25 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.38 7.08 -51.93 -0.37 0.01 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.74 7.81 -51.93 -0.41 0.34 16 40 H 0.06 0.41 7.08 -51.93 -0.37 0.04 16 41 H 0.10 1.15 3.56 -51.92 -0.18 0.97 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 44 H 0.08 0.68 7.31 -51.93 -0.38 0.30 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.38 7.02 -51.93 -0.36 1.02 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -31.74 349.96 -9.73 -41.48 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.69 Total: 9.62 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.58 Total: -2.89 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.80 Total: -60.75 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.74 -9.73 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996771663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.235 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds