Wall clock time and date at job start Tue Mar 31 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47116 * 269.99552 * 3 2 1 5 5 H 1.48503 * 109.47216 * 29.99686 * 3 2 1 6 6 H 1.48506 * 109.47437 * 149.99513 * 3 2 1 7 7 C 1.38811 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00225 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00114 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.46096 * 155.00270 * 10 9 7 12 12 C 1.53200 * 109.31249 * 181.38494 * 11 10 9 13 13 N 1.46926 * 108.77135 * 305.36172 * 12 11 10 14 14 C 1.34774 * 120.62900 * 233.58270 * 13 12 11 15 15 O 1.21276 * 120.00289 * 183.50874 * 14 13 12 16 16 C 1.50700 * 119.99960 * 3.51455 * 14 13 12 17 17 C 1.54141 * 110.74876 * 202.79520 * 16 14 13 18 18 C 1.55165 * 102.88650 * 98.15450 * 17 16 14 19 19 C 1.54839 * 101.65426 * 36.16504 * 18 17 16 20 20 N 1.47952 * 105.15305 * 323.26736 * 19 18 17 21 21 C 1.47867 * 109.45367 * 140.67676 * 20 19 18 22 22 C 1.54833 * 105.13660 * 219.32559 * 21 20 19 23 23 C 1.54136 * 110.74914 * 81.34954 * 16 14 13 24 24 C 1.46918 * 118.73968 * 53.86138 * 13 12 11 25 25 C 1.53042 * 109.45523 * 275.06737 * 10 9 7 26 26 H 0.97005 * 120.00298 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00080 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.44898 * 35.03052 * 10 9 7 29 29 H 1.09002 * 109.50240 * 61.43309 * 11 10 9 30 30 H 1.08998 * 109.49720 * 301.33401 * 11 10 9 31 31 H 1.08999 * 109.58252 * 185.57623 * 12 11 10 32 32 H 1.08994 * 109.58830 * 65.15245 * 12 11 10 33 33 H 1.09001 * 110.72381 * 339.81022 * 17 16 14 34 34 H 1.08993 * 110.88874 * 216.58023 * 17 16 14 35 35 H 1.08994 * 110.98731 * 278.07022 * 18 17 16 36 36 H 1.08995 * 110.98366 * 154.25654 * 18 17 16 37 37 H 1.08999 * 110.32574 * 82.22385 * 19 18 17 38 38 H 1.09002 * 110.31489 * 204.32872 * 19 18 17 39 39 H 1.09002 * 110.23065 * 100.43250 * 21 20 19 40 40 H 1.08998 * 110.43446 * 338.31872 * 21 20 19 41 41 H 1.09009 * 110.99030 * 278.64777 * 22 21 20 42 42 H 1.09000 * 110.99578 * 154.83417 * 22 21 20 43 43 H 1.09004 * 110.72967 * 20.18986 * 23 16 14 44 44 H 1.09001 * 110.73492 * 143.30954 * 23 16 14 45 45 H 1.09003 * 109.58589 * 65.92582 * 24 13 12 46 46 H 1.09003 * 109.59000 * 186.34517 * 24 13 12 47 47 H 1.09001 * 109.49995 * 298.56562 * 25 10 9 48 48 H 1.09006 * 109.49932 * 58.66599 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.1798 -4.7519 0.6112 12 6 1.9614 -6.0692 0.6425 13 7 2.4419 -6.3662 -0.7139 14 6 2.1744 -7.5537 -1.2924 15 8 2.6299 -7.8116 -2.3864 16 6 1.3092 -8.5611 -0.5800 17 6 1.5852 -9.9847 -1.1026 18 6 2.5629 -10.5587 -0.0431 19 6 2.0175 -9.9264 1.2608 20 7 1.5766 -8.5673 0.8767 21 6 0.3182 -8.2404 1.5809 22 6 -0.5409 -7.4795 0.5415 23 6 -0.1841 -8.2293 -0.7693 24 6 3.2247 -5.3465 -1.4251 25 6 2.4243 -4.0352 -1.4353 26 1 -0.4851 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.9678 -3.5501 0.5923 29 1 0.2813 -4.8763 0.0069 30 1 0.9000 -4.4708 1.6265 31 1 1.3089 -6.8731 0.9832 32 1 2.8110 -5.9741 1.3185 33 1 2.0572 -9.9504 -2.0845 34 1 0.6669 -10.5707 -1.1377 35 1 3.5846 -10.2326 -0.2376 36 1 2.5023 -11.6462 -0.0048 37 1 1.1747 -10.5053 1.6386 38 1 2.8049 -9.8706 2.0125 39 1 0.5224 -7.6040 2.4419 40 1 -0.1891 -9.1521 1.8966 41 1 -0.2469 -6.4314 0.4842 42 1 -1.6028 -7.5737 0.7684 43 1 -0.3291 -7.5831 -1.6351 44 1 -0.7727 -9.1415 -0.8677 45 1 4.1754 -5.1936 -0.9142 46 1 3.4062 -5.6734 -2.4490 47 1 1.5140 -4.1663 -2.0204 48 1 3.0303 -3.2439 -1.8767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996771663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:17 Heat of formation + Delta-G solvation = 2.119016 kcal Electronic energy + Delta-G solvation = -27572.973259 eV Core-core repulsion = 24049.352840 eV Total energy + Delta-G solvation = -3523.620420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58308 -39.81394 -38.77665 -36.26561 -35.04183 -33.74367 -32.45888 -31.88201 -31.10250 -29.19631 -26.77692 -26.28156 -24.85765 -24.02755 -23.09375 -22.30530 -21.66812 -21.09390 -19.70777 -19.02306 -18.11103 -17.65627 -16.90701 -16.70711 -16.25817 -15.91609 -15.52263 -15.39926 -15.30283 -14.93298 -14.68074 -14.59499 -14.26334 -13.97938 -13.80847 -13.47866 -13.15578 -13.04695 -12.89316 -12.83086 -12.55242 -12.46353 -12.41805 -12.20643 -12.09585 -12.01262 -11.94177 -11.83383 -11.72111 -11.66801 -11.32741 -11.15393 -10.89583 -10.84070 -9.59839 -9.38634 -8.99874 -7.93723 -5.21961 1.47224 1.48471 1.56316 1.57028 2.08575 2.56254 2.82851 3.38243 3.40446 3.44021 3.64958 3.77930 3.85442 3.99174 4.00587 4.06930 4.15029 4.22015 4.24724 4.39301 4.41190 4.47784 4.52509 4.64544 4.66539 4.71451 4.80054 4.81690 4.90182 4.93682 4.98404 5.01867 5.04526 5.05479 5.08994 5.11315 5.18237 5.25920 5.27311 5.38797 5.49694 5.54512 5.69347 5.70724 5.95649 6.28482 6.52639 7.18981 7.34770 8.10209 8.34289 9.29654 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.027022 B = 0.003615 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.953516 B = 7742.837512 C = 8151.080870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.735 5.735 10 C 0.174 3.826 11 C -0.133 4.133 12 C 0.083 3.917 13 N -0.590 5.590 14 C 0.532 3.468 15 O -0.593 6.593 16 C 0.071 3.929 17 C -0.125 4.125 18 C -0.128 4.128 19 C 0.031 3.969 20 N -0.513 5.513 21 C 0.023 3.977 22 C -0.159 4.159 23 C -0.124 4.124 24 C 0.116 3.884 25 C -0.134 4.134 26 H 0.250 0.750 27 H 0.372 0.628 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -24.862 5.098 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.066 3.934 11 C -0.172 4.172 12 C -0.038 4.038 13 N -0.320 5.320 14 C 0.321 3.679 15 O -0.474 6.474 16 C -0.022 4.022 17 C -0.164 4.164 18 C -0.166 4.166 19 C -0.095 4.095 20 N -0.239 5.239 21 C -0.103 4.103 22 C -0.197 4.197 23 C -0.162 4.162 24 C -0.008 4.008 25 C -0.175 4.175 26 H 0.059 0.941 27 H 0.204 0.796 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.056 -24.459 4.731 24.935 hybrid contribution -0.360 1.181 -0.799 1.470 sum 0.696 -23.278 3.933 23.618 Atomic orbital electron populations 1.69807 1.06516 1.25937 1.59715 1.25496 0.96332 1.00867 1.03927 0.85203 0.77836 0.79854 0.77271 1.21792 1.22150 1.19408 1.19608 0.91356 0.85311 1.40758 0.90860 1.42628 1.05384 1.00879 1.88561 1.20397 0.94569 0.85267 0.93171 1.22245 0.98550 0.94896 1.01491 1.23203 1.00444 0.98610 0.81579 1.48066 1.52387 1.14162 1.17344 1.20744 0.79737 0.82546 0.84911 1.90615 1.54724 1.78845 1.23176 1.22357 0.94949 0.94935 0.89936 1.22823 1.01365 0.92167 1.00040 1.22759 0.98353 1.01584 0.93895 1.23433 1.01164 0.87316 0.97599 1.65744 1.29196 1.27050 1.01891 1.23437 0.88158 1.01267 0.97422 1.23396 1.02068 1.00677 0.93531 1.22866 0.92122 1.02217 0.99020 1.21617 0.94192 0.87210 0.97743 1.22494 0.99187 0.95728 1.00125 0.94090 0.79603 0.93907 0.92294 0.90257 0.81363 0.91770 0.91401 0.88212 0.92733 0.88210 0.90273 0.89232 0.88139 0.89658 0.90161 0.88034 0.92494 0.87619 0.90838 0.90857 0.94074 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.24 -13.27 9.93 84.03 0.83 -12.43 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -37.06 5.12 -322.83 -1.65 -38.72 16 10 C 0.17 6.91 2.73 45.02 0.12 7.04 16 11 C -0.13 -4.17 4.62 30.67 0.14 -4.02 16 12 C 0.08 2.18 5.01 86.37 0.43 2.61 16 13 N -0.59 -17.89 2.97 -818.07 -2.43 -20.31 16 14 C 0.53 16.33 6.63 87.66 0.58 16.91 16 15 O -0.59 -22.26 15.02 -3.02 -0.05 -22.30 16 16 C 0.07 1.52 0.76 3.32 0.00 1.52 16 17 C -0.13 -2.32 5.98 31.72 0.19 -2.13 16 18 C -0.13 -1.90 7.07 31.96 0.23 -1.68 16 19 C 0.03 0.40 6.72 86.73 0.58 0.98 16 20 N -0.51 -8.81 3.46 -833.28 -2.88 -11.69 16 21 C 0.02 0.30 5.55 86.74 0.48 0.78 16 22 C -0.16 -2.56 6.40 31.96 0.20 -2.35 16 23 C -0.12 -2.29 6.03 31.72 0.19 -2.10 16 24 C 0.12 3.84 6.45 86.51 0.56 4.40 16 25 C -0.13 -5.13 5.67 30.82 0.17 -4.95 16 26 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 27 H 0.37 20.10 7.80 -92.71 -0.72 19.38 16 28 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 29 H 0.06 1.90 6.65 -2.39 -0.02 1.89 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.17 3.58 0.64 -30.89 -0.02 3.56 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.64 6.81 -2.39 -0.02 1.63 16 34 H 0.10 1.34 7.31 -2.39 -0.02 1.32 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.66 7.08 -2.39 -0.02 0.64 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.20 7.81 -2.39 -0.02 1.18 16 40 H 0.09 0.72 7.08 -2.39 -0.02 0.70 16 41 H 0.08 1.67 3.56 -2.38 -0.01 1.67 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.33 7.85 -2.38 -0.02 1.31 16 44 H 0.11 1.42 7.31 -2.39 -0.02 1.41 16 45 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.07 2.57 7.02 -2.39 -0.02 2.55 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -70.11 349.96 0.72 -69.39 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.23 Total: 33.42 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.19 Total: 0.78 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -6.68 Total: -129.72 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -70.11 0.72 -69.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996771663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.512 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds