Wall clock time and date at job start Tue Mar 31 2020 04:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99760 * 2 1 4 4 H 1.48495 * 109.47088 * 270.00545 * 3 2 1 5 5 H 1.48507 * 109.46972 * 30.00102 * 3 2 1 6 6 H 1.48490 * 109.47356 * 149.99608 * 3 2 1 7 7 C 1.37876 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99993 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46900 * 180.02562 * 9 7 2 11 11 C 1.46954 * 111.00011 * 169.99746 * 10 9 7 12 12 C 1.53057 * 109.36492 * 183.19106 * 11 10 9 13 13 N 1.46964 * 109.36173 * 301.59918 * 12 11 10 14 14 C 1.46902 * 110.99570 * 183.18856 * 13 12 11 15 15 H 1.08996 * 109.18314 * 54.37370 * 14 13 12 16 16 C 1.52824 * 109.22101 * 294.99791 * 14 13 12 17 17 C 1.53747 * 109.88174 * 178.20123 * 16 14 13 18 18 N 1.47386 * 106.64099 * 52.83113 * 17 16 14 19 19 C 1.33678 * 127.75269 * 124.97595 * 18 17 16 20 20 O 1.21277 * 125.39538 * 19.37305 * 19 18 17 21 21 C 1.51506 * 109.21521 * 199.39870 * 19 18 17 22 22 C 1.56120 * 104.07031 * 334.65784 * 21 19 18 23 23 C 1.47708 * 121.15232 * 305.89172 * 18 17 16 24 24 H 1.08999 * 110.31078 * 295.52087 * 23 18 17 25 25 C 1.53038 * 107.21213 * 55.61423 * 23 18 17 26 26 C 1.46951 * 110.87856 * 59.32255 * 13 12 11 27 27 C 1.46955 * 111.00079 * 293.79961 * 10 9 7 28 28 H 0.97001 * 120.00782 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47263 * 60.00570 * 9 7 2 30 30 H 1.09003 * 109.47127 * 299.99988 * 9 7 2 31 31 H 1.09000 * 109.48732 * 63.22221 * 11 10 9 32 32 H 1.08997 * 109.49325 * 303.15697 * 11 10 9 33 33 H 1.09001 * 109.48977 * 181.63255 * 12 11 10 34 34 H 1.08999 * 109.50662 * 61.57817 * 12 11 10 35 35 H 1.09001 * 109.40295 * 58.08019 * 16 14 13 36 36 H 1.08991 * 109.40663 * 298.32941 * 16 14 13 37 37 H 1.09001 * 110.01370 * 172.10630 * 17 16 14 38 38 H 1.08996 * 110.01731 * 293.54546 * 17 16 14 39 39 H 1.08996 * 110.52052 * 93.49287 * 21 19 18 40 40 H 1.08998 * 110.51913 * 216.09470 * 21 19 18 41 41 H 1.09001 * 111.01736 * 263.10580 * 22 21 19 42 42 H 1.08999 * 111.08176 * 139.38000 * 22 21 19 43 43 H 1.09005 * 109.62140 * 185.65644 * 25 23 18 44 44 H 1.09002 * 109.62283 * 65.09125 * 25 23 18 45 45 H 1.09000 * 109.49033 * 60.64626 * 26 13 12 46 46 H 1.08997 * 109.48990 * 180.71128 * 26 13 12 47 47 H 1.08998 * 109.48808 * 296.77812 * 27 10 9 48 48 H 1.09001 * 109.48946 * 56.84273 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 7 4.0014 -2.5788 0.0010 11 6 5.4508 -2.6248 -0.2367 12 6 5.9073 -4.0839 -0.3086 13 7 5.5604 -4.7653 0.9465 14 6 6.0502 -6.1503 0.9463 15 1 7.1196 -6.1519 0.7356 16 6 5.3221 -6.9412 -0.1399 17 6 5.8555 -8.3825 -0.1836 18 7 5.7615 -8.9092 1.1898 19 6 5.1415 -10.0203 1.5996 20 8 4.8318 -10.9541 0.8905 21 6 4.8864 -9.9280 3.0902 22 6 5.9885 -8.9489 3.6040 23 6 6.3748 -8.1926 2.3266 24 1 7.4589 -8.1660 2.2165 25 6 5.8067 -6.7716 2.3257 26 6 4.1110 -4.7193 1.1841 27 6 3.6545 -3.2602 1.2560 28 1 -0.4851 0.8400 0.0004 29 1 3.8746 -0.6798 0.8911 30 1 3.8752 -0.6801 -0.8889 31 1 5.9693 -2.1213 0.5792 32 1 5.6811 -2.1250 -1.1776 33 1 6.9867 -4.1205 -0.4560 34 1 5.4095 -4.5804 -1.1416 35 1 5.4866 -6.4649 -1.1065 36 1 4.2543 -6.9568 0.0776 37 1 5.2463 -8.9856 -0.8568 38 1 6.8941 -8.3862 -0.5143 39 1 3.8926 -9.5241 3.2835 40 1 4.9980 -10.9060 3.5582 41 1 6.8433 -9.4963 4.0012 42 1 5.5872 -8.2640 4.3509 43 1 6.3082 -6.1765 3.0890 44 1 4.7362 -6.8052 2.5284 45 1 3.5925 -5.2228 0.3682 46 1 3.8807 -5.2191 2.1250 47 1 4.1526 -2.7639 2.0889 48 1 2.5751 -3.2236 1.4033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172190821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:46 Heat of formation + Delta-G solvation = -11.831502 kcal Electronic energy + Delta-G solvation = -26478.755856 eV Core-core repulsion = 22954.530497 eV Total energy + Delta-G solvation = -3524.225359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14442 -39.25458 -37.36851 -35.75275 -33.79237 -32.60675 -31.52568 -30.54245 -29.57505 -28.39348 -26.50967 -24.64911 -23.78986 -23.18679 -21.79170 -21.30104 -20.68381 -19.61525 -18.72546 -16.85934 -16.79358 -16.19086 -16.00856 -15.91122 -14.98578 -14.81786 -14.53686 -14.46972 -14.16580 -14.03892 -13.80066 -13.55576 -13.40848 -13.16772 -12.92203 -12.72055 -12.34752 -12.28746 -12.08200 -11.88587 -11.64143 -11.45936 -11.31744 -11.09594 -10.98747 -10.89048 -10.67723 -10.52489 -10.33580 -10.06057 -9.95732 -9.83532 -9.28811 -8.92827 -8.58946 -8.18044 -7.39000 -6.07312 -4.04884 2.32355 2.73402 3.26822 3.34408 3.36440 3.82846 4.08934 4.11959 4.40099 4.44205 4.51135 4.62865 4.74598 4.78717 4.89939 4.93571 4.98584 5.14692 5.24892 5.26080 5.32556 5.36600 5.40140 5.43700 5.50812 5.55164 5.60993 5.64074 5.72405 5.77813 5.78553 5.86588 5.99726 6.02338 6.16126 6.27030 6.31955 6.48190 6.60445 6.81306 6.93733 6.95128 7.14919 7.20321 7.57487 7.88524 7.95265 8.02813 8.63518 9.00356 9.54437 11.05717 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.026728 B = 0.002949 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.358499 B = 9492.097361 C = 9733.007570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.059 3.941 13 N -0.532 5.532 14 C 0.088 3.912 15 H 0.079 0.921 16 C -0.171 4.171 17 C 0.135 3.865 18 N -0.621 5.621 19 C 0.523 3.477 20 O -0.535 6.535 21 C -0.156 4.156 22 C -0.124 4.124 23 C 0.129 3.871 24 H 0.083 0.917 25 C -0.120 4.120 26 C 0.053 3.947 27 C 0.067 3.933 28 H 0.264 0.736 29 H -0.011 1.011 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.028 0.972 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.134 -16.190 6.481 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.069 4.069 13 N -0.255 5.255 14 C -0.021 4.021 15 H 0.097 0.903 16 C -0.211 4.211 17 C 0.013 3.987 18 N -0.356 5.356 19 C 0.311 3.689 20 O -0.412 6.412 21 C -0.196 4.196 22 C -0.162 4.162 23 C 0.025 3.975 24 H 0.101 0.899 25 C -0.158 4.158 26 C -0.074 4.074 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.801 -16.521 6.004 23.636 hybrid contribution 0.366 1.140 -0.143 1.206 sum 16.167 -15.381 5.861 23.071 Atomic orbital electron populations 1.69889 1.06128 1.26863 1.51046 1.24900 0.94730 0.98865 0.94824 0.86861 0.80307 0.84013 0.78577 1.20171 1.21208 1.19267 1.21020 0.88726 0.94669 1.50375 0.90230 1.20147 0.97038 0.84090 0.95049 1.62104 1.10324 1.19082 1.33889 1.22110 0.90233 0.94784 1.00391 1.22166 0.99396 0.94926 0.90420 1.62456 1.15008 1.13382 1.34655 1.21631 0.99105 0.87525 0.93858 0.90299 1.22726 1.02050 0.95221 1.01085 1.21688 1.01392 0.94045 0.81565 1.48650 1.54952 1.23993 1.08021 1.20719 0.76358 0.81210 0.90646 1.90723 1.53909 1.34181 1.62410 1.22669 1.01252 1.02114 0.93560 1.22591 0.98885 0.98218 0.96519 1.21784 0.97813 0.92099 0.85847 0.89873 1.22085 1.02305 0.93864 0.97582 1.22309 0.86716 0.98017 1.00381 1.22028 1.01726 0.91724 0.90663 0.92651 0.99340 0.95883 0.95138 0.91058 0.91207 0.93854 0.90179 0.90733 0.89549 0.91228 0.87640 0.88354 0.89766 0.88812 0.89641 0.90798 0.93873 0.90928 0.95349 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.51 -14.32 9.03 -34.44 -0.31 -14.63 16 8 H 0.08 2.43 7.37 -52.49 -0.39 2.04 16 9 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 10 N -0.53 -10.84 4.70 -235.91 -1.11 -11.95 16 11 C 0.05 0.89 5.61 -3.77 -0.02 0.87 16 12 C 0.06 0.79 5.24 -3.76 -0.02 0.77 16 13 N -0.53 -6.74 4.68 -226.44 -1.06 -7.80 16 14 C 0.09 0.85 2.11 -67.68 -0.14 0.71 16 15 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 16 C -0.17 -1.69 4.63 -26.43 -0.12 -1.82 16 17 C 0.13 1.26 6.95 -3.17 -0.02 1.24 16 18 N -0.62 -5.94 2.94 -163.75 -0.48 -6.42 16 19 C 0.52 5.94 8.02 -11.08 -0.09 5.85 16 20 O -0.54 -8.38 17.86 5.56 0.10 -8.28 16 21 C -0.16 -1.14 6.97 -25.82 -0.18 -1.32 16 22 C -0.12 -0.66 6.82 -24.85 -0.17 -0.83 16 23 C 0.13 0.90 3.53 -67.04 -0.24 0.67 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 C -0.12 -0.97 4.38 -26.59 -0.12 -1.09 16 26 C 0.05 0.78 4.83 -3.77 -0.02 0.76 16 27 C 0.07 1.25 5.43 -3.76 -0.02 1.23 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 30 H 0.02 0.56 7.45 -51.93 -0.39 0.17 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.07 0.79 8.11 -51.93 -0.42 0.36 16 34 H 0.04 0.60 6.53 -51.93 -0.34 0.26 16 35 H 0.08 0.81 6.47 -51.93 -0.34 0.48 16 36 H 0.07 0.87 6.52 -51.93 -0.34 0.54 16 37 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.40 7.81 -51.93 -0.41 0.00 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.67 6.52 -51.93 -0.34 0.34 16 45 H 0.04 0.67 6.48 -51.93 -0.34 0.34 16 46 H 0.07 0.94 6.25 -51.93 -0.32 0.61 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -32.94 356.27 -10.81 -43.75 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.14 Total: -2.90 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.59 Total: -1.83 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -1.88 Total: -52.78 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.10 Total: -8.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.94 -10.81 -43.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.915 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds