Wall clock time and date at job start Tue Mar 31 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46679 * 2 1 4 4 N 1.46497 * 109.47171 * 240.00354 * 2 1 3 5 5 C 1.36936 * 120.00341 * 84.99459 * 4 2 1 6 6 H 1.07997 * 119.99875 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00450 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00308 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99526 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47180 * 90.00068 * 9 7 5 11 11 H 1.48499 * 109.46965 * 209.99984 * 9 7 5 12 12 H 1.48504 * 109.47511 * 329.99939 * 9 7 5 13 13 C 1.52999 * 109.47619 * 119.99924 * 2 1 3 14 14 C 1.53354 * 109.41657 * 60.12656 * 13 2 1 15 15 C 1.53189 * 109.14814 * 178.67461 * 14 13 2 16 16 N 1.46927 * 108.89209 * 54.58176 * 15 14 13 17 17 C 1.34776 * 120.63143 * 126.30073 * 16 15 14 18 18 O 1.21617 * 119.99846 * 351.39962 * 17 16 15 19 19 C 1.47238 * 119.99774 * 171.40918 * 17 16 15 20 20 C 1.37001 * 127.18897 * 332.70370 * 19 17 16 21 21 N 1.33325 * 106.36943 * 179.85339 * 20 19 17 22 22 N 1.28512 * 109.43997 * 0.42931 * 21 20 19 23 23 N 1.28714 * 110.63823 * 359.72721 * 22 21 20 24 24 C 1.46499 * 126.03709 * 179.97438 * 23 22 21 25 25 C 1.46927 * 118.73663 * 306.31779 * 16 15 14 26 26 C 1.53044 * 109.45904 * 300.00214 * 13 2 1 27 27 H 1.09001 * 109.46821 * 299.99404 * 1 2 3 28 28 H 1.08995 * 109.47058 * 59.99876 * 1 2 3 29 29 H 1.09004 * 109.46684 * 180.02562 * 1 2 3 30 30 H 0.97006 * 119.99980 * 265.00030 * 4 2 1 31 31 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.45884 * 180.02562 * 13 2 1 33 33 H 1.08997 * 109.68065 * 58.71305 * 14 13 2 34 34 H 1.09004 * 109.47473 * 298.51308 * 14 13 2 35 35 H 1.09000 * 109.58832 * 294.72469 * 15 14 13 36 36 H 1.09001 * 109.58260 * 174.43560 * 15 14 13 37 37 H 1.08000 * 126.81597 * 0.02562 * 20 19 17 38 38 H 1.08998 * 109.47095 * 264.48846 * 24 23 22 39 39 H 1.08997 * 109.47037 * 24.48862 * 24 23 22 40 40 H 1.08999 * 109.47039 * 144.48756 * 24 23 22 41 41 H 1.09002 * 109.58514 * 173.39634 * 25 16 15 42 42 H 1.08996 * 109.58788 * 293.67718 * 25 16 15 43 43 H 1.09004 * 109.49634 * 61.43165 * 26 13 2 44 44 H 1.09005 * 109.52150 * 301.35086 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6113 -0.6618 -3.5094 8 7 2.7364 -0.0054 -4.6432 9 14 3.0543 -2.4746 -3.4258 10 1 1.8565 -3.2922 -3.7453 11 1 4.1295 -2.7671 -4.4074 12 1 3.5292 -2.8057 -2.0582 13 6 2.0401 -0.7212 1.2492 14 6 1.5310 -2.1677 1.2464 15 6 2.0723 -2.8934 2.4822 16 7 1.7088 -2.1264 3.6815 17 6 1.0555 -2.7163 4.7021 18 8 0.6235 -3.8461 4.5754 19 6 0.8647 -1.9929 5.9702 20 6 1.6606 -1.0053 6.4881 21 7 1.1052 -0.6430 7.6447 22 7 0.0500 -1.3467 7.8514 23 7 -0.1427 -2.1712 6.8820 24 6 -1.2441 -3.1310 6.7728 25 6 2.0708 -0.7039 3.7468 26 6 1.5299 0.0004 2.4986 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.2491 -1.6317 -1.1527 31 1 3.0598 -0.4626 -5.4353 32 1 3.1301 -0.7206 1.2491 33 1 1.8753 -2.6764 0.3460 34 1 0.4412 -2.1695 1.2717 35 1 3.1573 -2.9721 2.4137 36 1 1.6364 -3.8907 2.5403 37 1 2.5581 -0.5989 6.0457 38 1 -0.9176 -4.1023 7.1443 39 1 -2.0904 -2.7815 7.3641 40 1 -1.5435 -3.2231 5.7289 41 1 1.6319 -0.2558 4.6383 42 1 3.1555 -0.6042 3.7840 43 1 0.4401 -0.0216 2.5119 44 1 1.8728 1.0351 2.4873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691663263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:57 Heat of formation + Delta-G solvation = 88.038360 kcal Electronic energy + Delta-G solvation = -26002.835999 eV Core-core repulsion = 22379.400978 eV Total energy + Delta-G solvation = -3623.435021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.69740 -40.39879 -38.28778 -35.90838 -34.93017 -33.19820 -32.32475 -31.15257 -30.56765 -28.80246 -28.41179 -25.95258 -24.25137 -24.01017 -23.16086 -22.36146 -21.49549 -20.08802 -18.92398 -17.97188 -17.51731 -17.31084 -17.09009 -16.34163 -15.43282 -15.06089 -14.76348 -14.59087 -14.46262 -14.09693 -13.78523 -13.60056 -13.49627 -13.27931 -13.17724 -12.83332 -12.52314 -12.47577 -12.03740 -11.75277 -11.58047 -11.53009 -11.43160 -10.95558 -10.79100 -10.61938 -10.53721 -10.44269 -10.38349 -10.18797 -9.83748 -9.73630 -9.58676 -8.99981 -8.90420 -7.30370 -5.79874 -3.15223 0.60231 1.66731 1.94156 2.55080 2.67279 3.32479 3.35479 3.42174 3.81296 4.01943 4.33404 4.52586 4.55438 4.58141 4.63353 4.76209 4.85140 4.95325 4.98055 5.13061 5.15864 5.26625 5.34001 5.45304 5.51410 5.53918 5.59139 5.74789 5.75791 5.88864 5.94742 5.97192 6.04435 6.12340 6.23765 6.32862 6.45664 6.53718 6.75567 6.94314 7.02095 7.61652 7.97093 7.97507 8.39412 9.18175 9.90635 10.10209 11.38694 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.003203 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.991966 B = 8738.564107 C = 9113.062283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.095 4.095 14 C -0.130 4.130 15 C 0.113 3.887 16 N -0.588 5.588 17 C 0.593 3.407 18 O -0.536 6.536 19 C -0.064 4.064 20 C -0.004 4.004 21 N -0.272 5.272 22 N -0.061 5.061 23 N -0.257 5.257 24 C 0.082 3.918 25 C 0.088 3.912 26 C -0.128 4.128 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.360 0.640 31 H 0.259 0.741 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.204 0.796 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -4.651 22.916 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.115 4.115 14 C -0.168 4.168 15 C -0.008 4.008 16 N -0.320 5.320 17 C 0.379 3.621 18 O -0.413 6.413 19 C -0.199 4.199 20 C -0.164 4.164 21 N -0.135 5.135 22 N -0.042 5.042 23 N -0.054 5.054 24 C -0.059 4.059 25 C -0.035 4.035 26 C -0.166 4.166 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.194 0.806 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.220 0.780 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.139 -4.591 23.995 24.965 hybrid contribution 0.662 -1.727 -1.235 2.224 sum -4.476 -6.318 22.760 24.041 Atomic orbital electron populations 1.22512 0.99134 1.00848 1.00295 1.20154 0.91908 0.95483 0.85034 0.92642 1.42845 1.79729 1.09481 1.07172 1.19075 1.36831 0.95613 0.85632 0.89256 1.24668 1.01539 0.97417 0.95578 1.69694 1.52745 1.35564 1.00260 0.86591 0.78167 0.86976 0.77004 1.21120 1.21750 1.20352 1.21521 1.00622 0.94402 0.94915 1.22067 1.01720 0.96205 0.96810 1.21808 1.00255 0.95954 0.82816 1.47820 1.56191 1.11294 1.16719 1.16717 0.78718 0.85179 0.81530 1.90823 1.49722 1.18645 1.82141 1.21990 0.95657 1.05135 0.97079 1.24111 1.02226 0.96352 0.93728 1.74926 1.03163 1.19825 1.15558 1.78284 1.14202 1.01207 1.10509 1.47653 1.19285 1.25755 1.12680 1.22443 0.86529 0.90823 1.06073 1.22375 1.00999 0.79635 1.00466 1.22003 1.01671 0.99634 0.93315 0.94157 0.92581 0.93471 0.80631 0.93068 0.90674 0.90163 0.90927 0.90772 0.88861 0.77966 0.88270 0.87638 0.87729 0.88848 0.90298 0.90987 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.79 37.16 0.33 -2.39 16 2 C 0.18 3.15 2.72 -67.93 -0.18 2.97 16 3 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.75 -16.50 4.85 -53.43 -0.26 -16.76 16 5 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -28.90 13.97 55.49 0.78 -28.12 16 9 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 13 C -0.10 -1.24 2.14 -90.41 -0.19 -1.43 16 14 C -0.13 -1.66 4.83 -26.45 -0.13 -1.79 16 15 C 0.11 1.24 6.43 -3.71 -0.02 1.22 16 16 N -0.59 -5.97 2.97 -174.11 -0.52 -6.49 16 17 C 0.59 6.71 7.49 -12.60 -0.09 6.62 16 18 O -0.54 -7.33 15.27 5.26 0.08 -7.25 16 19 C -0.06 -0.66 6.42 -82.33 -0.53 -1.19 16 20 C 0.00 -0.04 9.66 -17.35 -0.17 -0.21 16 21 N -0.27 -3.21 12.35 30.47 0.38 -2.83 16 22 N -0.06 -0.71 13.14 60.35 0.79 0.08 16 23 N -0.26 -2.59 3.79 -64.12 -0.24 -2.83 16 24 C 0.08 0.53 10.66 59.85 0.64 1.17 16 25 C 0.09 0.72 5.18 -3.71 -0.02 0.70 16 26 C -0.13 -1.27 4.97 -26.61 -0.13 -1.40 16 27 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.75 6.46 -51.93 -0.34 0.42 16 30 H 0.36 7.76 3.90 -40.82 -0.16 7.60 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.15 6.47 -51.93 -0.34 0.82 16 34 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.09 7.00 -51.93 -0.36 0.72 16 37 H 0.20 1.28 6.45 -52.49 -0.34 0.95 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.69 7.55 -51.93 -0.39 0.29 16 41 H 0.09 0.68 4.33 -51.93 -0.22 0.45 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.76 6.51 -51.93 -0.34 0.42 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -33.82 343.10 -5.43 -39.25 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.13 Total: 5.44 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.76 Total: -2.44 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.92 Total: -56.94 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.08 Total: -7.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.82 -5.43 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691663263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.287 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds