Wall clock time and date at job start Tue Mar 31 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46679 * 2 1 4 4 N 1.46497 * 109.47171 * 240.00354 * 2 1 3 5 5 C 1.36936 * 120.00341 * 84.99459 * 4 2 1 6 6 H 1.07997 * 119.99875 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00450 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00308 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99526 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47180 * 90.00068 * 9 7 5 11 11 H 1.48499 * 109.46965 * 209.99984 * 9 7 5 12 12 H 1.48504 * 109.47511 * 329.99939 * 9 7 5 13 13 C 1.52999 * 109.47619 * 119.99924 * 2 1 3 14 14 C 1.53354 * 109.41657 * 60.12656 * 13 2 1 15 15 C 1.53189 * 109.14814 * 178.67461 * 14 13 2 16 16 N 1.46927 * 108.89209 * 54.58176 * 15 14 13 17 17 C 1.34776 * 120.63143 * 126.30073 * 16 15 14 18 18 O 1.21617 * 119.99846 * 351.39962 * 17 16 15 19 19 C 1.47238 * 119.99774 * 171.40918 * 17 16 15 20 20 C 1.37001 * 127.18897 * 332.70370 * 19 17 16 21 21 N 1.33325 * 106.36943 * 179.85339 * 20 19 17 22 22 N 1.28512 * 109.43997 * 0.42931 * 21 20 19 23 23 N 1.28714 * 110.63823 * 359.72721 * 22 21 20 24 24 C 1.46499 * 126.03709 * 179.97438 * 23 22 21 25 25 C 1.46927 * 118.73663 * 306.31779 * 16 15 14 26 26 C 1.53044 * 109.45904 * 300.00214 * 13 2 1 27 27 H 1.09001 * 109.46821 * 299.99404 * 1 2 3 28 28 H 1.08995 * 109.47058 * 59.99876 * 1 2 3 29 29 H 1.09004 * 109.46684 * 180.02562 * 1 2 3 30 30 H 0.97006 * 119.99980 * 265.00030 * 4 2 1 31 31 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.45884 * 180.02562 * 13 2 1 33 33 H 1.08997 * 109.68065 * 58.71305 * 14 13 2 34 34 H 1.09004 * 109.47473 * 298.51308 * 14 13 2 35 35 H 1.09000 * 109.58832 * 294.72469 * 15 14 13 36 36 H 1.09001 * 109.58260 * 174.43560 * 15 14 13 37 37 H 1.08000 * 126.81597 * 0.02562 * 20 19 17 38 38 H 1.08998 * 109.47095 * 264.48846 * 24 23 22 39 39 H 1.08997 * 109.47037 * 24.48862 * 24 23 22 40 40 H 1.08999 * 109.47039 * 144.48756 * 24 23 22 41 41 H 1.09002 * 109.58514 * 173.39634 * 25 16 15 42 42 H 1.08996 * 109.58788 * 293.67718 * 25 16 15 43 43 H 1.09004 * 109.49634 * 61.43165 * 26 13 2 44 44 H 1.09005 * 109.52150 * 301.35086 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6113 -0.6618 -3.5094 8 7 2.7364 -0.0054 -4.6432 9 14 3.0543 -2.4746 -3.4258 10 1 1.8565 -3.2922 -3.7453 11 1 4.1295 -2.7671 -4.4074 12 1 3.5292 -2.8057 -2.0582 13 6 2.0401 -0.7212 1.2492 14 6 1.5310 -2.1677 1.2464 15 6 2.0723 -2.8934 2.4822 16 7 1.7088 -2.1264 3.6815 17 6 1.0555 -2.7163 4.7021 18 8 0.6235 -3.8461 4.5754 19 6 0.8647 -1.9929 5.9702 20 6 1.6606 -1.0053 6.4881 21 7 1.1052 -0.6430 7.6447 22 7 0.0500 -1.3467 7.8514 23 7 -0.1427 -2.1712 6.8820 24 6 -1.2441 -3.1310 6.7728 25 6 2.0708 -0.7039 3.7468 26 6 1.5299 0.0004 2.4986 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.2491 -1.6317 -1.1527 31 1 3.0598 -0.4626 -5.4353 32 1 3.1301 -0.7206 1.2491 33 1 1.8753 -2.6764 0.3460 34 1 0.4412 -2.1695 1.2717 35 1 3.1573 -2.9721 2.4137 36 1 1.6364 -3.8907 2.5403 37 1 2.5581 -0.5989 6.0457 38 1 -0.9176 -4.1023 7.1443 39 1 -2.0904 -2.7815 7.3641 40 1 -1.5435 -3.2231 5.7289 41 1 1.6319 -0.2558 4.6383 42 1 3.1555 -0.6042 3.7840 43 1 0.4401 -0.0216 2.5119 44 1 1.8728 1.0351 2.4873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691663263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:57 Heat of formation + Delta-G solvation = 63.791337 kcal Electronic energy + Delta-G solvation = -26003.887429 eV Core-core repulsion = 22379.400978 eV Total energy + Delta-G solvation = -3624.486450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.44968 -41.27450 -39.36215 -37.13041 -35.69467 -34.74424 -33.36016 -32.61502 -31.50435 -30.24107 -29.05973 -26.99295 -25.67879 -24.96081 -24.22698 -23.21363 -22.66117 -21.04001 -20.13374 -19.62043 -18.43117 -18.15105 -17.84507 -17.18699 -16.63199 -16.33207 -16.15263 -15.47748 -15.42028 -15.28895 -15.00002 -14.46434 -14.43712 -14.24107 -14.21483 -13.99392 -13.84796 -13.42720 -13.12486 -12.97524 -12.89218 -12.77057 -12.68260 -12.29037 -12.15197 -11.83767 -11.79870 -11.63111 -11.49120 -11.29398 -11.22542 -11.07619 -10.90959 -10.50877 -9.77617 -9.26793 -7.99343 -5.31195 -0.15760 0.98281 1.17668 1.37648 1.41778 1.48991 1.77580 1.89697 2.50626 3.07728 3.32619 3.36026 3.58416 3.68663 3.80055 3.85636 3.90911 3.98185 4.17482 4.18196 4.34712 4.37383 4.50745 4.53819 4.55787 4.62629 4.68573 4.80092 4.84987 4.87977 4.90670 4.97841 5.06627 5.11043 5.21459 5.27240 5.32679 5.40394 5.49853 5.70341 5.82423 6.15689 6.25705 6.79339 7.13023 7.20968 7.91000 8.08859 9.22738 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.003203 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.991966 B = 8738.564107 C = 9113.062283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.044 0.956 4 N -0.751 5.751 5 C -0.222 4.222 6 H 0.055 0.945 7 C -0.069 4.069 8 N -0.988 5.988 9 Si 0.950 3.050 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.244 1.244 13 C -0.085 4.085 14 C -0.126 4.126 15 C 0.119 3.881 16 N -0.584 5.584 17 C 0.596 3.404 18 O -0.565 6.565 19 C -0.075 4.075 20 C 0.007 3.993 21 N -0.298 5.298 22 N -0.078 5.078 23 N -0.255 5.255 24 C 0.074 3.926 25 C 0.089 3.911 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.365 0.635 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -5.602 25.475 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 H 0.062 0.938 4 N -0.395 5.395 5 C -0.354 4.354 6 H 0.073 0.927 7 C -0.260 4.260 8 N -0.640 5.640 9 Si 0.777 3.223 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.169 1.169 13 C -0.104 4.104 14 C -0.165 4.165 15 C -0.002 4.002 16 N -0.315 5.315 17 C 0.382 3.618 18 O -0.444 6.444 19 C -0.210 4.210 20 C -0.153 4.153 21 N -0.160 5.160 22 N -0.059 5.059 23 N -0.052 5.052 24 C -0.065 4.065 25 C -0.032 4.032 26 C -0.161 4.161 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.250 0.750 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.696 -5.527 26.637 27.607 hybrid contribution 0.437 -1.333 -2.006 2.448 sum -4.259 -6.860 24.631 25.921 Atomic orbital electron populations 1.22384 0.98197 1.00977 1.00324 1.20428 0.92441 0.95177 0.85227 0.93754 1.42877 1.79856 1.09726 1.07054 1.19042 1.34444 0.94379 0.87485 0.92740 1.25486 1.02785 1.02451 0.95228 1.69885 1.55138 1.37731 1.01203 0.85485 0.77536 0.80880 0.78372 1.20948 1.22610 1.16857 1.21393 1.00711 0.94343 0.93963 1.21993 1.01310 0.96011 0.97154 1.21694 1.01000 0.95355 0.82174 1.47845 1.55621 1.11993 1.16076 1.16788 0.78290 0.84821 0.81893 1.90813 1.50967 1.19928 1.82680 1.21985 0.96326 1.05695 0.97032 1.24613 1.02531 0.95441 0.92736 1.74909 1.03716 1.20638 1.16744 1.78249 1.14626 1.01860 1.11155 1.47951 1.19612 1.25493 1.12126 1.22714 0.86529 0.90770 1.06523 1.22534 1.02650 0.78140 0.99890 1.21965 1.01431 1.00303 0.92404 0.90929 0.95740 0.93269 0.80057 0.93553 0.90356 0.91752 0.91600 0.89160 0.89645 0.74988 0.87416 0.85420 0.87859 0.87417 0.87705 0.91404 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 8.79 71.98 0.63 -4.35 16 2 C 0.17 5.79 2.72 44.99 0.12 5.91 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 4 N -0.75 -32.52 4.85 -322.94 -1.56 -34.09 16 5 C -0.22 -12.26 10.41 84.03 0.87 -11.38 16 6 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 8 N -0.99 -63.05 13.97 21.65 0.30 -62.75 16 9 Si 0.95 44.36 27.74 68.60 1.90 46.27 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.24 -9.95 6.52 99.48 0.65 -9.30 16 13 C -0.08 -1.97 2.14 -10.66 -0.02 -1.99 16 14 C -0.13 -2.91 4.83 30.78 0.15 -2.76 16 15 C 0.12 2.27 6.43 86.36 0.56 2.82 16 16 N -0.58 -9.90 2.97 -823.02 -2.45 -12.35 16 17 C 0.60 11.96 7.49 86.61 0.65 12.61 16 18 O -0.56 -14.45 15.27 -4.08 -0.06 -14.51 16 19 C -0.08 -1.37 6.42 40.41 0.26 -1.11 16 20 C 0.01 0.12 9.66 84.18 0.81 0.93 16 21 N -0.30 -6.40 12.35 -57.50 -0.71 -7.11 16 22 N -0.08 -1.69 13.14 37.02 0.49 -1.20 16 23 N -0.25 -4.63 3.79 -356.78 -1.35 -5.98 16 24 C 0.07 0.83 10.66 127.77 1.36 2.19 16 25 C 0.09 1.08 5.18 86.36 0.45 1.52 16 26 C -0.12 -1.99 4.97 30.67 0.15 -1.83 16 27 H 0.07 1.79 6.46 -2.39 -0.02 1.77 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 1.51 6.46 -2.39 -0.02 1.49 16 30 H 0.36 15.08 3.90 -92.70 -0.36 14.71 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.70 6.47 -2.39 -0.02 1.69 16 34 H 0.07 1.60 6.51 -2.39 -0.02 1.59 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.81 7.00 -2.39 -0.02 1.79 16 37 H 0.23 1.92 6.45 -2.91 -0.02 1.90 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 1.21 7.55 -2.39 -0.02 1.19 16 41 H 0.11 1.07 4.33 -2.39 -0.01 1.06 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.19 6.51 -2.38 -0.02 1.17 16 44 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -75.43 343.10 3.62 -71.81 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.61 Total: 20.86 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.46 Total: -0.96 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -5.29 Total: -123.47 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.06 Total: -14.51 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.27 kcal Total: -75.43 3.62 -71.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691663263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.601 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds