Wall clock time and date at job start Tue Mar 31 2020 03:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46890 * 2 1 4 4 N 1.46504 * 109.47029 * 119.99993 * 2 1 3 5 5 C 1.36932 * 119.99879 * 274.99939 * 4 2 1 6 6 H 1.07998 * 120.00426 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99985 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47182 * 120.00365 * 9 7 5 12 12 H 1.48498 * 109.46811 * 239.99916 * 9 7 5 13 13 C 1.52992 * 109.47122 * 239.99888 * 2 1 3 14 14 C 1.53043 * 109.46379 * 60.00119 * 13 2 1 15 15 C 1.53187 * 109.31638 * 181.38634 * 14 13 2 16 16 N 1.46921 * 108.77528 * 305.36264 * 15 14 13 17 17 C 1.34781 * 120.63076 * 233.58842 * 16 15 14 18 18 O 1.21610 * 120.00267 * 6.30655 * 17 16 15 19 19 C 1.47239 * 119.99783 * 186.30327 * 17 16 15 20 20 C 1.37004 * 127.19083 * 20.29424 * 19 17 16 21 21 N 1.33319 * 106.37267 * 179.97438 * 20 19 17 22 22 N 1.28510 * 109.43682 * 359.77101 * 21 20 19 23 23 N 1.28711 * 110.64212 * 0.38825 * 22 21 20 24 24 C 1.46494 * 126.03757 * 179.88511 * 23 22 21 25 25 C 1.46922 * 118.74089 * 53.85905 * 16 15 14 26 26 C 1.53042 * 109.46234 * 180.02562 * 13 2 1 27 27 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46583 * 299.99904 * 1 2 3 29 29 H 1.08992 * 109.46699 * 60.00004 * 1 2 3 30 30 H 0.97003 * 120.00092 * 94.99930 * 4 2 1 31 31 H 0.97001 * 120.00077 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.45555 * 300.03481 * 13 2 1 33 33 H 1.09006 * 109.49430 * 61.42818 * 14 13 2 34 34 H 1.09004 * 109.49389 * 301.33710 * 14 13 2 35 35 H 1.09001 * 109.58569 * 185.57702 * 15 14 13 36 36 H 1.08992 * 109.59080 * 65.15124 * 15 14 13 37 37 H 1.08002 * 126.81075 * 359.97267 * 20 19 17 38 38 H 1.09000 * 109.47015 * 264.03671 * 24 23 22 39 39 H 1.09002 * 109.47248 * 144.03622 * 24 23 22 40 40 H 1.08997 * 109.47196 * 24.03542 * 24 23 22 41 41 H 1.09003 * 109.58461 * 65.92930 * 25 16 15 42 42 H 1.08993 * 109.59035 * 186.34945 * 25 16 15 43 43 H 1.09001 * 109.50101 * 298.57059 * 26 13 2 44 44 H 1.09007 * 109.49443 * 58.63390 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6123 -0.6617 3.5090 8 7 2.9263 -1.9385 3.4497 9 14 2.7901 0.2701 5.1183 10 1 2.3752 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2070 0.2281 5.5606 13 6 2.0400 -0.7212 -1.2492 14 6 1.5298 0.0003 -2.4986 15 6 2.0135 -0.7443 -3.7469 16 7 3.4753 -0.8772 -3.6815 17 6 4.2492 -0.4586 -4.7025 18 8 3.7513 0.1376 -5.6382 19 6 5.6976 -0.7230 -4.6848 20 6 6.3569 -1.6736 -3.9510 21 7 7.6501 -1.5496 -4.2507 22 7 7.8018 -0.6035 -5.1070 23 7 6.6675 -0.0699 -5.3993 24 6 6.4510 1.0360 -6.3354 25 6 4.0770 -1.4805 -2.4846 26 6 3.5705 -0.7217 -1.2486 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8899 30 1 2.2491 -1.6318 1.1527 31 1 3.2503 -2.3956 4.2416 32 1 1.6761 -1.7486 -1.2492 33 1 1.9138 1.0205 -2.5119 34 1 0.4401 0.0214 -2.4870 35 1 1.7373 -0.1812 -4.6383 36 1 1.5579 -1.7339 -3.7816 37 1 5.9165 -2.3828 -3.2657 38 1 6.4106 1.9756 -5.7845 39 1 5.5105 0.8846 -6.8653 40 1 7.2708 1.0704 -7.0529 41 1 3.7862 -2.5290 -2.4184 42 1 5.1626 -1.4034 -2.5429 43 1 3.9346 0.3054 -1.2740 44 1 3.9338 -1.2143 -0.3467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691663264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:59 Heat of formation + Delta-G solvation = 89.515896 kcal Electronic energy + Delta-G solvation = -25925.369916 eV Core-core repulsion = 22301.998966 eV Total energy + Delta-G solvation = -3623.370950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57810 -40.26021 -38.05898 -35.75987 -34.78119 -33.25609 -32.15860 -30.89088 -30.50684 -28.45052 -28.20794 -25.90989 -24.36561 -23.48894 -23.22752 -22.22634 -21.11539 -19.91738 -19.46878 -17.72185 -17.31872 -17.03736 -16.97461 -16.24286 -15.38016 -15.03762 -14.65591 -14.33927 -14.02185 -13.87431 -13.70350 -13.63076 -13.53760 -13.26179 -12.80147 -12.59639 -12.54642 -12.17082 -11.92320 -11.66422 -11.36807 -11.25481 -11.05538 -10.89762 -10.77445 -10.47674 -10.42597 -10.32005 -10.21020 -10.14125 -9.85254 -9.63263 -9.58573 -8.94928 -8.78920 -6.97529 -5.79426 -3.07365 0.69905 1.79804 2.07192 2.70217 2.81522 3.41202 3.47527 3.49229 3.95162 4.14323 4.44593 4.55854 4.64568 4.72505 4.78697 4.94702 4.97973 5.06221 5.11076 5.26670 5.29193 5.43721 5.49324 5.58539 5.65057 5.66385 5.83790 5.85086 5.92416 6.04102 6.09591 6.12658 6.26175 6.28670 6.42195 6.46915 6.60744 6.71661 6.89582 7.06233 7.09656 7.68945 7.72268 8.10772 8.39584 9.51135 10.08574 10.43327 11.43235 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.003489 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.542038 B = 8023.935444 C = 9044.873325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.091 4.091 14 C -0.128 4.128 15 C 0.115 3.885 16 N -0.586 5.586 17 C 0.595 3.405 18 O -0.545 6.545 19 C -0.066 4.066 20 C -0.008 4.008 21 N -0.271 5.271 22 N -0.062 5.062 23 N -0.257 5.257 24 C 0.075 3.925 25 C 0.073 3.927 26 C -0.121 4.121 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.383 0.617 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.213 0.787 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 2.457 -19.360 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.111 4.111 14 C -0.167 4.167 15 C -0.006 4.006 16 N -0.318 5.318 17 C 0.381 3.619 18 O -0.423 6.423 19 C -0.201 4.201 20 C -0.168 4.168 21 N -0.134 5.134 22 N -0.042 5.042 23 N -0.054 5.054 24 C -0.066 4.066 25 C -0.048 4.048 26 C -0.159 4.159 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.217 0.783 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.057 2.972 -19.984 20.434 hybrid contribution -1.012 0.211 1.252 1.624 sum 2.045 3.183 -18.732 19.110 Atomic orbital electron populations 1.22499 0.99506 1.00774 0.99868 1.20208 0.91622 0.95314 0.86057 0.93766 1.42413 1.78104 1.10616 1.05282 1.19257 1.36215 0.93832 0.87385 0.91315 1.24698 1.02288 0.95947 0.97936 1.69654 1.51076 1.08625 1.28769 0.86178 0.77314 0.78818 0.84254 1.20657 1.21939 1.21910 1.21406 0.94916 1.00056 0.94673 1.22032 1.01376 0.99669 0.93614 1.21759 0.77533 1.01319 1.00037 1.47850 1.07428 1.59725 1.16774 1.16687 0.83275 0.79133 0.82802 1.90765 1.74401 1.41955 1.35157 1.21936 0.93023 1.01709 1.03384 1.24435 0.90081 1.00824 1.01444 1.74947 1.17277 1.11530 1.09636 1.78272 1.06445 1.06774 1.12759 1.47631 1.04286 1.24570 1.28887 1.22550 1.06045 0.86008 0.91978 1.22863 0.99785 0.97868 0.84331 1.21969 0.96054 1.00955 0.96956 0.93554 0.93012 0.94322 0.78320 0.93600 0.91167 0.91568 0.90054 0.88988 0.90898 0.77115 0.88732 0.86631 0.87730 0.90201 0.88022 0.91882 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.14 37.16 0.34 -2.44 16 2 C 0.18 3.19 2.47 -67.93 -0.17 3.03 16 3 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 4 N -0.72 -16.67 4.41 -53.43 -0.24 -16.90 16 5 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 9 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C -0.09 -1.27 1.79 -90.58 -0.16 -1.43 16 14 C -0.13 -1.47 5.04 -26.61 -0.13 -1.61 16 15 C 0.12 1.21 6.44 -3.72 -0.02 1.19 16 16 N -0.59 -6.58 2.97 -173.85 -0.52 -7.09 16 17 C 0.60 7.33 7.62 -12.60 -0.10 7.24 16 18 O -0.54 -7.59 14.54 5.27 0.08 -7.51 16 19 C -0.07 -0.79 6.65 -82.33 -0.55 -1.34 16 20 C -0.01 -0.09 9.79 -17.35 -0.17 -0.26 16 21 N -0.27 -3.73 12.35 30.47 0.38 -3.35 16 22 N -0.06 -0.81 13.14 60.35 0.79 -0.02 16 23 N -0.26 -2.95 3.79 -64.12 -0.24 -3.19 16 24 C 0.07 0.56 11.01 59.84 0.66 1.22 16 25 C 0.07 0.79 5.29 -3.49 -0.02 0.77 16 26 C -0.12 -1.68 5.24 -26.38 -0.14 -1.81 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.53 6.40 -51.93 -0.33 0.19 16 30 H 0.38 9.35 7.58 -40.82 -0.31 9.04 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.86 6.36 -51.93 -0.33 0.53 16 35 H 0.09 0.99 7.00 -51.93 -0.36 0.63 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.21 1.86 5.70 -52.49 -0.30 1.56 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.90 6.56 -51.93 -0.34 0.56 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.03 3.58 -51.93 -0.19 0.85 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 1.58 7.41 -51.92 -0.38 1.20 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -32.05 349.09 -5.81 -37.85 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.32 Total: 6.69 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.70 Total: -2.29 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.90 Total: -56.89 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.05 -5.81 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691663264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.370 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds