Wall clock time and date at job start Tue Mar 31 2020 03:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46890 * 2 1 4 4 N 1.46504 * 109.47029 * 119.99993 * 2 1 3 5 5 C 1.36932 * 119.99879 * 274.99939 * 4 2 1 6 6 H 1.07998 * 120.00426 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99985 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47182 * 120.00365 * 9 7 5 12 12 H 1.48498 * 109.46811 * 239.99916 * 9 7 5 13 13 C 1.52992 * 109.47122 * 239.99888 * 2 1 3 14 14 C 1.53043 * 109.46379 * 60.00119 * 13 2 1 15 15 C 1.53187 * 109.31638 * 181.38634 * 14 13 2 16 16 N 1.46921 * 108.77528 * 305.36264 * 15 14 13 17 17 C 1.34781 * 120.63076 * 233.58842 * 16 15 14 18 18 O 1.21610 * 120.00267 * 6.30655 * 17 16 15 19 19 C 1.47239 * 119.99783 * 186.30327 * 17 16 15 20 20 C 1.37004 * 127.19083 * 20.29424 * 19 17 16 21 21 N 1.33319 * 106.37267 * 179.97438 * 20 19 17 22 22 N 1.28510 * 109.43682 * 359.77101 * 21 20 19 23 23 N 1.28711 * 110.64212 * 0.38825 * 22 21 20 24 24 C 1.46494 * 126.03757 * 179.88511 * 23 22 21 25 25 C 1.46922 * 118.74089 * 53.85905 * 16 15 14 26 26 C 1.53042 * 109.46234 * 180.02562 * 13 2 1 27 27 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46583 * 299.99904 * 1 2 3 29 29 H 1.08992 * 109.46699 * 60.00004 * 1 2 3 30 30 H 0.97003 * 120.00092 * 94.99930 * 4 2 1 31 31 H 0.97001 * 120.00077 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.45555 * 300.03481 * 13 2 1 33 33 H 1.09006 * 109.49430 * 61.42818 * 14 13 2 34 34 H 1.09004 * 109.49389 * 301.33710 * 14 13 2 35 35 H 1.09001 * 109.58569 * 185.57702 * 15 14 13 36 36 H 1.08992 * 109.59080 * 65.15124 * 15 14 13 37 37 H 1.08002 * 126.81075 * 359.97267 * 20 19 17 38 38 H 1.09000 * 109.47015 * 264.03671 * 24 23 22 39 39 H 1.09002 * 109.47248 * 144.03622 * 24 23 22 40 40 H 1.08997 * 109.47196 * 24.03542 * 24 23 22 41 41 H 1.09003 * 109.58461 * 65.92930 * 25 16 15 42 42 H 1.08993 * 109.59035 * 186.34945 * 25 16 15 43 43 H 1.09001 * 109.50101 * 298.57059 * 26 13 2 44 44 H 1.09007 * 109.49443 * 58.63390 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6123 -0.6617 3.5090 8 7 2.9263 -1.9385 3.4497 9 14 2.7901 0.2701 5.1183 10 1 2.3752 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2070 0.2281 5.5606 13 6 2.0400 -0.7212 -1.2492 14 6 1.5298 0.0003 -2.4986 15 6 2.0135 -0.7443 -3.7469 16 7 3.4753 -0.8772 -3.6815 17 6 4.2492 -0.4586 -4.7025 18 8 3.7513 0.1376 -5.6382 19 6 5.6976 -0.7230 -4.6848 20 6 6.3569 -1.6736 -3.9510 21 7 7.6501 -1.5496 -4.2507 22 7 7.8018 -0.6035 -5.1070 23 7 6.6675 -0.0699 -5.3993 24 6 6.4510 1.0360 -6.3354 25 6 4.0770 -1.4805 -2.4846 26 6 3.5705 -0.7217 -1.2486 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8899 30 1 2.2491 -1.6318 1.1527 31 1 3.2503 -2.3956 4.2416 32 1 1.6761 -1.7486 -1.2492 33 1 1.9138 1.0205 -2.5119 34 1 0.4401 0.0214 -2.4870 35 1 1.7373 -0.1812 -4.6383 36 1 1.5579 -1.7339 -3.7816 37 1 5.9165 -2.3828 -3.2657 38 1 6.4106 1.9756 -5.7845 39 1 5.5105 0.8846 -6.8653 40 1 7.2708 1.0704 -7.0529 41 1 3.7862 -2.5290 -2.4184 42 1 5.1626 -1.4034 -2.5429 43 1 3.9346 0.3054 -1.2740 44 1 3.9338 -1.2143 -0.3467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691663264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:59 Heat of formation + Delta-G solvation = 67.864191 kcal Electronic energy + Delta-G solvation = -25926.308805 eV Core-core repulsion = 22301.998966 eV Total energy + Delta-G solvation = -3624.309838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.48360 -41.23297 -39.20330 -37.05820 -35.70039 -34.74650 -33.37192 -32.20754 -31.62648 -29.91009 -29.06103 -26.99667 -25.91166 -24.58546 -24.41239 -23.17954 -22.25431 -21.15382 -20.53374 -19.16437 -18.45805 -18.18044 -17.86807 -17.18684 -16.75935 -16.25086 -15.82130 -15.50190 -15.35970 -15.23801 -14.92774 -14.63851 -14.32879 -14.18048 -13.96575 -13.83321 -13.56611 -13.55876 -13.07175 -12.91740 -12.78761 -12.76672 -12.30363 -12.25399 -12.14268 -12.06904 -11.80585 -11.50112 -11.37481 -11.34005 -11.18074 -11.11295 -10.87077 -10.53085 -9.75174 -8.91798 -7.89632 -5.14956 -0.20407 0.99048 1.13810 1.47688 1.49148 1.57395 1.80553 1.92497 2.59017 3.05935 3.32185 3.44590 3.65346 3.78835 3.80016 3.86803 3.88653 4.14824 4.18181 4.27731 4.38520 4.43782 4.51015 4.57724 4.58656 4.62503 4.78809 4.81090 4.84311 4.91021 4.94908 5.06874 5.10230 5.17687 5.26185 5.29682 5.34707 5.49589 5.54041 5.63096 5.72053 6.13807 6.34095 6.78990 7.18184 7.40909 8.19545 8.42308 9.33620 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.003489 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.542038 B = 8023.935444 C = 9044.873325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 H 0.031 0.969 4 N -0.731 5.731 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.081 4.081 14 C -0.119 4.119 15 C 0.117 3.883 16 N -0.583 5.583 17 C 0.598 3.402 18 O -0.562 6.562 19 C -0.077 4.077 20 C -0.004 4.004 21 N -0.300 5.300 22 N -0.077 5.077 23 N -0.253 5.253 24 C 0.067 3.933 25 C 0.082 3.918 26 C -0.116 4.116 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.375 0.625 31 H 0.249 0.751 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.235 0.765 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.047 0.953 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 2.845 -20.830 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.049 0.951 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.264 4.264 8 N -0.616 5.616 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.224 1.224 12 H -0.224 1.224 13 C -0.101 4.101 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.314 5.314 17 C 0.384 3.616 18 O -0.441 6.441 19 C -0.211 4.211 20 C -0.164 4.164 21 N -0.162 5.162 22 N -0.058 5.058 23 N -0.050 5.050 24 C -0.072 4.072 25 C -0.039 4.039 26 C -0.154 4.154 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.207 0.793 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.251 0.749 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.252 3.401 -21.490 21.873 hybrid contribution -0.811 0.175 1.637 1.835 sum 1.441 3.576 -19.853 20.224 Atomic orbital electron populations 1.22363 0.97963 1.00936 1.00478 1.20450 0.92561 0.94633 0.86017 0.95105 1.42563 1.78287 1.10301 1.05984 1.19555 1.34215 0.93873 0.88594 0.91427 1.25355 1.03450 0.96792 1.00799 1.69781 1.52888 1.09877 1.29072 0.85267 0.76669 0.78204 0.80829 1.19546 1.22362 1.22360 1.21286 0.94840 1.00097 0.93834 1.21947 1.02260 0.98904 0.92582 1.21834 0.76971 1.02356 0.99267 1.47876 1.07794 1.59302 1.16437 1.16687 0.83306 0.78829 0.82764 1.90759 1.74685 1.42795 1.35875 1.22021 0.93061 1.02181 1.03880 1.24839 0.89411 1.00903 1.01293 1.74916 1.18478 1.12323 1.10521 1.78215 1.07190 1.07186 1.13214 1.47967 1.03762 1.24658 1.28613 1.22859 1.06938 0.85385 0.92055 1.22812 1.00083 0.98394 0.82634 1.21832 0.96088 1.00180 0.97350 0.93567 0.95414 0.90692 0.79294 0.94232 0.90577 0.92397 0.88406 0.88793 0.88810 0.74947 0.87422 0.86793 0.85398 0.87950 0.87381 0.93366 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.14 71.98 0.66 -4.33 16 2 C 0.17 6.02 2.47 44.99 0.11 6.14 16 3 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 4 N -0.73 -33.88 4.41 -322.95 -1.42 -35.30 16 5 C -0.23 -12.25 9.93 84.03 0.83 -11.42 16 6 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 8 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 9 Si 0.96 45.46 29.55 68.60 2.03 47.49 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 13 C -0.08 -2.13 1.79 -10.77 -0.02 -2.15 16 14 C -0.12 -2.39 5.04 30.67 0.15 -2.23 16 15 C 0.12 2.08 6.44 86.36 0.56 2.64 16 16 N -0.58 -11.65 2.97 -822.20 -2.44 -14.09 16 17 C 0.60 13.55 7.62 86.61 0.66 14.21 16 18 O -0.56 -14.56 14.54 -4.06 -0.06 -14.62 16 19 C -0.08 -1.71 6.65 40.41 0.27 -1.44 16 20 C 0.00 -0.09 9.79 84.18 0.82 0.73 16 21 N -0.30 -8.04 12.35 -57.50 -0.71 -8.75 16 22 N -0.08 -1.98 13.14 37.02 0.49 -1.50 16 23 N -0.25 -5.47 3.79 -356.78 -1.35 -6.83 16 24 C 0.07 0.89 11.01 127.77 1.41 2.30 16 25 C 0.08 1.60 5.29 86.51 0.46 2.06 16 26 C -0.12 -3.12 5.24 30.82 0.16 -2.96 16 27 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.81 6.40 -2.39 -0.02 1.80 16 30 H 0.37 18.51 7.58 -92.71 -0.70 17.81 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.10 1.68 6.36 -2.38 -0.02 1.67 16 35 H 0.09 1.73 7.00 -2.39 -0.02 1.71 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.23 3.66 5.70 -2.91 -0.02 3.64 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.61 6.56 -2.39 -0.02 1.60 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.11 2.01 3.58 -2.39 -0.01 2.00 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 2.23 7.41 -2.38 -0.02 2.21 16 Total: -1.00 -69.32 349.09 3.68 -65.64 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.32 Total: 24.53 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.54 Total: 0.01 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.16 Total: -123.06 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.06 Total: -14.62 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.32 3.68 -65.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691663264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.509 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds