Wall clock time and date at job start Tue Mar 31 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27014 * 125.12063 * 2 1 4 4 N 1.39339 * 114.48222 * 179.97438 * 3 2 1 5 5 C 1.34771 * 125.65123 * 180.02562 * 4 3 2 6 6 O 1.21788 * 120.00360 * 179.97438 * 5 4 3 7 7 C 1.41754 * 120.00150 * 359.97249 * 5 4 3 8 8 H 1.07995 * 119.99419 * 359.97438 * 7 5 4 9 9 C 1.40174 * 119.99958 * 179.97438 * 7 5 4 10 10 N 1.30612 * 120.00052 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99470 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47010 * 90.00223 * 11 9 7 13 13 H 1.48502 * 109.46985 * 209.99983 * 11 9 7 14 14 H 1.48493 * 109.47653 * 330.00037 * 11 9 7 15 15 C 1.47237 * 108.69950 * 359.97438 * 4 3 2 16 16 O 1.42899 * 110.66341 * 118.60821 * 15 4 3 17 17 C 1.50699 * 110.65993 * 241.55873 * 15 4 3 18 18 C 1.38238 * 119.98695 * 208.56320 * 17 15 4 19 19 C 1.38214 * 120.01487 * 179.97438 * 18 17 15 20 20 C 1.38355 * 119.98457 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 120.00993 * 179.97438 * 20 19 18 22 22 C 1.38352 * 119.97427 * 0.02562 * 20 19 18 23 23 C 1.38210 * 119.98717 * 359.97438 * 22 20 19 24 24 C 1.51205 * 125.12333 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47447 * 0.03063 * 1 2 3 26 26 H 1.09001 * 109.46980 * 120.03423 * 1 2 3 27 27 H 1.09007 * 109.47260 * 240.02784 * 1 2 3 28 28 H 0.97002 * 119.99601 * 180.02562 * 10 9 7 29 29 H 0.96703 * 113.99648 * 63.68859 * 16 15 4 30 30 H 1.08001 * 119.99123 * 359.97438 * 18 17 15 31 31 H 1.08000 * 120.00940 * 180.27418 * 19 18 17 32 32 H 1.08003 * 120.00227 * 180.02562 * 22 20 19 33 33 H 1.07996 * 119.99586 * 179.97438 * 23 22 20 34 34 H 1.08997 * 110.56280 * 61.42168 * 24 2 1 35 35 H 1.09004 * 110.56210 * 298.58051 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2377 1.0389 0.0000 4 7 3.6072 0.7817 0.0006 5 6 4.5813 1.7130 0.0012 6 8 5.7504 1.3714 0.0021 7 6 4.2454 3.0901 0.0007 8 1 3.2088 3.3930 -0.0006 9 6 5.2587 4.0587 0.0019 10 7 6.5123 3.6923 0.0029 11 14 4.8158 5.8735 0.0019 12 1 4.6973 6.3540 1.4021 13 1 5.8771 6.6420 -0.6969 14 1 3.5212 6.0672 -0.6992 15 6 3.8136 -0.6762 0.0016 16 8 4.5186 -1.0865 -1.1717 17 6 4.5528 -1.1076 1.2420 18 6 5.3532 -2.2342 1.2126 19 6 6.0318 -2.6301 2.3498 20 6 5.9094 -1.8988 3.5178 21 17 6.7609 -2.3958 4.9467 22 6 5.1072 -0.7719 3.5470 23 6 4.4292 -0.3771 2.4092 24 6 2.3770 -1.2367 0.0006 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5144 -0.8897 27 1 -0.3634 -0.5134 0.8903 28 1 7.2135 4.3626 0.0041 29 1 5.4150 -0.7297 -1.2369 30 1 5.4484 -2.8052 0.3008 31 1 6.6607 -3.5078 2.3255 32 1 5.0117 -0.2005 4.4584 33 1 3.8027 0.5023 2.4319 34 1 2.1979 -1.8311 -0.8954 35 1 2.1979 -1.8304 0.8971 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004810780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:15 Heat of formation + Delta-G solvation = -10.993313 kcal Electronic energy + Delta-G solvation = -23418.398331 eV Core-core repulsion = 19829.700537 eV Total energy + Delta-G solvation = -3588.697794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.071 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.45917 -38.50193 -36.59465 -36.36869 -35.52218 -32.76894 -31.91230 -31.12495 -30.76866 -28.49626 -27.83813 -26.44234 -23.33723 -22.56993 -21.30519 -19.89477 -19.29463 -17.59179 -17.08368 -16.22267 -15.76004 -15.22666 -14.84986 -14.53263 -14.36885 -13.97767 -13.60783 -13.37687 -13.25689 -13.04411 -12.87701 -12.61074 -12.30941 -12.16250 -12.07969 -11.58813 -11.42709 -11.29724 -11.15634 -11.11702 -10.66675 -10.61121 -10.56156 -10.36655 -10.30502 -9.34226 -9.00032 -8.78962 -8.44044 -7.89920 -7.56504 -6.42057 -4.89096 1.31337 1.54447 2.24860 2.66136 3.06630 3.13418 3.18177 3.57771 3.88240 4.06468 4.20063 4.36981 4.75949 4.84849 5.02978 5.08053 5.18569 5.34184 5.61692 5.63339 5.66704 5.76248 5.79509 5.85536 5.92296 5.94839 6.16681 6.21404 6.39353 6.46001 6.67347 6.78865 7.00508 7.27161 7.84667 8.04466 8.20639 8.24219 8.81680 9.31124 10.29454 10.49323 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.005786 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.494884 B = 4838.507499 C = 6269.850896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.024 3.976 3 N -0.199 5.199 4 N -0.481 5.481 5 C 0.572 3.428 6 O -0.566 6.566 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.084 3.916 10 N -0.749 5.749 11 Si 0.914 3.086 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.261 1.261 15 C 0.351 3.649 16 O -0.559 6.559 17 C -0.090 4.090 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.032 4.032 21 Cl -0.083 7.083 22 C -0.111 4.111 23 C -0.066 4.066 24 C -0.109 4.109 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.273 0.727 29 H 0.393 0.607 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -10.342 4.442 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.171 4.171 3 N -0.009 5.009 4 N -0.314 5.314 5 C 0.386 3.614 6 O -0.446 6.446 7 C -0.548 4.548 8 H 0.100 0.900 9 C -0.139 4.139 10 N -0.377 5.377 11 Si 0.738 3.262 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.185 1.185 15 C 0.225 3.775 16 O -0.364 6.364 17 C -0.093 4.093 18 C -0.107 4.107 19 C -0.136 4.136 20 C -0.058 4.058 21 Cl -0.054 7.054 22 C -0.130 4.130 23 C -0.085 4.085 24 C -0.150 4.150 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.244 0.756 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.119 0.881 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.162 -9.736 4.406 12.336 hybrid contribution 0.722 0.339 0.210 0.825 sum -5.440 -9.398 4.616 11.799 Atomic orbital electron populations 1.20147 0.86522 1.03575 1.02325 1.24789 0.96844 0.90380 1.05083 1.73746 0.92294 1.27490 1.07373 1.51497 1.00754 1.04103 1.75091 1.16829 0.81860 0.84909 0.77804 1.90693 1.16304 1.80656 1.56962 1.20203 0.94952 0.89299 1.50330 0.90032 1.25875 0.94317 1.01243 0.92422 1.70001 1.00041 1.35282 1.32371 0.86248 0.79330 0.81499 0.79128 1.19458 1.20286 1.18453 1.20524 0.90859 0.83126 0.82942 1.86379 1.33111 1.74029 1.42861 1.20422 0.98118 0.95383 0.95348 1.20874 0.95617 0.96275 0.97921 1.20909 1.00878 1.00388 0.91382 1.20883 0.98813 0.97777 0.88356 1.98340 1.76753 1.91090 1.39238 1.20970 0.97068 0.95527 0.99409 1.20951 0.98047 0.98227 0.91250 1.21974 0.90062 0.98511 1.04411 0.90554 0.90824 0.90845 0.91650 0.75561 0.84739 0.85162 0.85141 0.85059 0.88088 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.48 36.01 0.38 -0.36 16 2 C 0.02 0.39 7.43 -79.06 -0.59 -0.19 16 3 N -0.20 -4.19 11.09 34.84 0.39 -3.80 16 4 N -0.48 -11.27 2.69 -54.85 -0.15 -11.42 16 5 C 0.57 15.94 6.86 -14.92 -0.10 15.84 16 6 O -0.57 -17.08 13.80 5.11 0.07 -17.01 16 7 C -0.51 -14.43 9.04 -37.51 -0.34 -14.77 16 8 H 0.08 2.22 7.42 -52.49 -0.39 1.83 16 9 C 0.08 2.28 5.50 -17.34 -0.10 2.19 16 10 N -0.75 -21.50 11.73 55.56 0.65 -20.85 16 11 Si 0.91 19.84 29.56 -169.99 -5.02 14.82 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 15 C 0.35 6.93 1.24 -68.04 -0.08 6.84 16 16 O -0.56 -11.24 12.22 -35.23 -0.43 -11.67 16 17 C -0.09 -1.69 4.14 -104.62 -0.43 -2.13 16 18 C -0.09 -1.43 9.37 -39.59 -0.37 -1.81 16 19 C -0.12 -1.76 9.83 -39.55 -0.39 -2.14 16 20 C -0.03 -0.50 6.32 -39.50 -0.25 -0.75 16 21 Cl -0.08 -1.14 28.96 -51.86 -1.50 -2.64 16 22 C -0.11 -1.88 9.83 -39.55 -0.39 -2.27 16 23 C -0.07 -1.27 8.95 -39.59 -0.35 -1.62 16 24 C -0.11 -1.72 6.42 -27.00 -0.17 -1.89 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 29 H 0.39 8.25 8.07 45.56 0.37 8.62 16 30 H 0.13 1.96 7.49 -52.49 -0.39 1.57 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.13 2.74 7.32 -52.49 -0.38 2.35 16 34 H 0.10 1.45 8.01 -51.93 -0.42 1.03 16 35 H 0.10 1.29 7.73 -51.93 -0.40 0.89 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -32.80 321.66 -7.20 -40.01 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -2.86 Total: 10.78 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.19 Total: -3.06 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.89 Total: -36.06 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.36 Total: -28.68 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.80 -7.20 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004810780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.013 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds