Wall clock time and date at job start Tue Mar 31 2020 04:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86800 * 120.00623 * 2 1 4 4 H 1.48493 * 109.47465 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47121 * 300.00531 * 3 2 1 6 6 H 1.48503 * 109.46515 * 60.00316 * 3 2 1 7 7 C 1.40144 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.41655 * 119.99958 * 359.97438 * 7 2 1 10 10 O 1.21781 * 119.99958 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99879 * 180.02562 * 9 7 2 12 12 C 1.39034 * 119.99760 * 175.73284 * 11 9 7 13 13 C 1.39325 * 119.94536 * 34.91691 * 12 11 9 14 14 C 1.37609 * 120.06044 * 179.72577 * 13 12 11 15 15 C 1.39829 * 119.93830 * 0.54701 * 14 13 12 16 16 C 1.47569 * 120.05729 * 179.74572 * 15 14 13 17 17 N 1.31041 * 124.99264 * 359.97438 * 16 15 14 18 18 C 1.35639 * 108.76948 * 179.97438 * 17 16 15 19 19 C 1.39790 * 133.69511 * 179.97438 * 18 17 16 20 20 C 1.36653 * 119.83781 * 180.02562 * 19 18 17 21 21 C 1.38739 * 120.57759 * 0.02562 * 20 19 18 22 22 C 1.38013 * 120.50011 * 0.02562 * 21 20 19 23 23 C 1.38614 * 119.77074 * 359.97438 * 22 21 20 24 24 O 1.34689 * 124.98705 * 179.67848 * 16 15 14 25 25 C 1.39828 * 119.88273 * 359.72883 * 15 14 13 26 26 C 1.37616 * 119.93809 * 359.97438 * 25 15 14 27 27 H 0.97005 * 119.99475 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99992 * 355.44683 * 11 9 7 29 29 H 1.08001 * 119.96348 * 359.97438 * 13 12 11 30 30 H 1.07997 * 120.02703 * 180.27694 * 14 13 12 31 31 H 1.08001 * 120.07903 * 359.97438 * 19 18 17 32 32 H 1.08000 * 119.71064 * 179.97438 * 20 19 18 33 33 H 1.07994 * 119.75412 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.11593 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.03147 * 179.97438 * 25 15 14 36 36 H 1.07995 * 119.96769 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7004 1.3462 -0.0006 5 1 1.8817 2.3964 -1.2124 6 1 1.8817 2.3962 1.2126 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2138 -0.0010 9 6 1.2986 -2.4404 -0.0005 10 8 0.0807 -2.4403 0.0004 11 7 1.9724 -3.6077 -0.0005 12 6 1.2800 -4.8100 0.0891 13 6 0.0330 -4.9414 -0.5184 14 6 -0.6518 -6.1321 -0.4360 15 6 -0.1003 -7.2071 0.2679 16 6 -0.8349 -8.4834 0.3626 17 7 -2.0078 -8.7170 -0.1732 18 6 -2.3740 -9.9905 0.1162 19 6 -3.4976 -10.7649 -0.1872 20 6 -3.5766 -12.0533 0.2612 21 6 -2.5504 -12.6018 1.0169 22 6 -1.4330 -11.8540 1.3283 23 6 -1.3345 -10.5452 0.8825 24 8 -0.3959 -9.5812 1.0078 25 6 1.1488 -7.0707 0.8815 26 6 1.8321 -5.8796 0.7907 27 1 -0.4849 0.8401 0.0004 28 1 2.9400 -3.6090 -0.0672 29 1 -0.3946 -4.1092 -1.0578 30 1 -1.6163 -6.2348 -0.9109 31 1 -4.3016 -10.3456 -0.7738 32 1 -4.4458 -12.6496 0.0260 33 1 -2.6265 -13.6216 1.3640 34 1 -0.6377 -12.2874 1.9166 35 1 1.5768 -7.8993 1.4261 36 1 2.7970 -5.7739 1.2641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012505310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:00 Heat of formation + Delta-G solvation = 29.946534 kcal Electronic energy + Delta-G solvation = -22876.601161 eV Core-core repulsion = 19292.111501 eV Total energy + Delta-G solvation = -3584.489659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.14626 -39.38693 -38.15839 -37.16351 -34.75327 -33.74984 -32.58130 -30.94037 -30.63639 -30.50218 -28.51136 -26.65583 -23.92604 -23.32116 -22.28398 -21.95033 -21.17189 -19.96835 -18.11022 -17.63455 -17.44498 -16.69312 -16.62940 -16.21814 -15.65874 -14.86398 -14.57463 -14.25625 -14.09790 -13.88930 -13.55417 -13.21624 -12.87480 -12.69589 -12.62324 -12.41390 -12.26770 -11.85842 -11.62485 -11.45435 -11.35614 -11.17245 -10.82320 -10.71744 -10.39388 -10.37316 -9.65818 -9.07427 -8.94792 -8.62853 -8.46285 -7.82078 -7.15563 -6.47876 -5.01938 0.39341 1.09799 1.52151 1.85224 2.45050 2.72050 2.98776 3.07695 3.12030 3.54402 3.80382 3.89813 4.12665 4.38343 4.40982 4.49677 4.68040 4.95158 5.03175 5.04516 5.24580 5.28857 5.31817 5.57314 5.70950 5.77616 5.87408 5.97182 6.05939 6.12742 6.16081 6.19258 6.42950 6.47725 6.66664 6.84016 6.94871 7.12939 7.21583 7.68301 7.70925 7.90076 8.01474 8.69804 9.11537 10.25995 10.45071 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.044912 B = 0.002411 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.289839 B =11611.360294 C =12108.073621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.539 3.461 10 O -0.563 6.563 11 N -0.696 5.696 12 C 0.229 3.771 13 C -0.140 4.140 14 C -0.035 4.035 15 C -0.103 4.103 16 C 0.327 3.673 17 N -0.491 5.491 18 C 0.036 3.964 19 C -0.069 4.069 20 C -0.120 4.120 21 C -0.107 4.107 22 C -0.089 4.089 23 C -0.004 4.004 24 O -0.212 6.212 25 C -0.053 4.053 26 C -0.185 4.185 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 -19.204 1.180 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.349 3.651 10 O -0.446 6.446 11 N -0.338 5.338 12 C 0.127 3.873 13 C -0.161 4.161 14 C -0.056 4.056 15 C -0.106 4.106 16 C 0.122 3.878 17 N -0.219 5.219 18 C -0.077 4.077 19 C -0.088 4.088 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.055 4.055 24 O -0.104 6.104 25 C -0.073 4.073 26 C -0.207 4.207 27 H 0.085 0.915 28 H 0.229 0.771 29 H 0.172 0.828 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.875 -18.527 0.836 18.640 hybrid contribution 1.367 0.275 0.522 1.489 sum -0.508 -18.252 1.358 18.309 Atomic orbital electron populations 1.70009 1.07317 1.28039 1.31683 1.25786 0.94697 1.00823 0.92404 0.86194 0.80499 0.80938 0.78529 1.18514 1.19842 1.19862 1.20062 0.94482 0.89869 1.52548 0.90956 1.17112 0.87700 0.81994 0.78329 1.90659 1.13465 1.85686 1.54774 1.44290 1.09943 1.04434 1.75096 1.18297 0.92640 0.86295 0.90092 1.21513 0.95543 0.97534 1.01479 1.21038 0.99050 0.90552 0.94919 1.17181 0.96027 0.87895 1.09532 1.24203 0.88816 0.86977 0.87831 1.70933 1.11661 1.14353 1.24996 1.20006 0.96816 0.91077 0.99848 1.20102 0.95680 0.93040 0.99934 1.20754 0.99462 0.94865 0.98829 1.20967 0.92851 0.99821 0.98847 1.19875 0.99873 0.88930 1.02059 1.20396 0.89742 0.92079 1.03263 1.84554 1.42341 1.20539 1.62974 1.20816 0.92559 0.97236 0.96708 1.20819 1.02493 0.93742 1.03662 0.91499 0.77055 0.82789 0.84894 0.84795 0.84823 0.84521 0.84920 0.85742 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.75 11.73 55.56 0.65 -20.10 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.67 29.56 -169.99 -5.02 13.65 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.53 -13.91 9.31 -37.56 -0.35 -14.25 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.54 14.21 7.40 -14.96 -0.11 14.10 16 10 O -0.56 -16.79 12.27 5.12 0.06 -16.72 16 11 N -0.70 -14.66 5.29 -12.44 -0.07 -14.72 16 12 C 0.23 4.52 6.30 -83.78 -0.53 3.99 16 13 C -0.14 -2.87 8.66 -39.41 -0.34 -3.21 16 14 C -0.04 -0.64 9.66 -39.22 -0.38 -1.02 16 15 C -0.10 -1.76 5.88 -104.90 -0.62 -2.38 16 16 C 0.33 5.56 7.83 -14.08 -0.11 5.45 16 17 N -0.49 -8.53 10.88 -9.33 -0.10 -8.63 16 18 C 0.04 0.54 7.23 -84.73 -0.61 -0.07 16 19 C -0.07 -0.80 10.06 -39.57 -0.40 -1.20 16 20 C -0.12 -1.05 9.97 -39.97 -0.40 -1.45 16 21 C -0.11 -0.89 10.03 -39.48 -0.40 -1.29 16 22 C -0.09 -0.93 10.07 -39.52 -0.40 -1.33 16 23 C 0.00 -0.06 7.43 -38.57 -0.29 -0.35 16 24 O -0.21 -3.34 10.45 2.30 0.02 -3.31 16 25 C -0.05 -0.81 9.69 -39.21 -0.38 -1.20 16 26 C -0.19 -3.00 9.95 -39.40 -0.39 -3.40 16 27 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 28 H 0.40 6.97 8.77 -40.82 -0.36 6.61 16 29 H 0.15 3.59 6.20 -52.49 -0.33 3.27 16 30 H 0.13 2.31 7.79 -52.49 -0.41 1.91 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.61 7.86 -52.49 -0.41 1.20 16 36 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -32.53 323.50 -8.54 -41.07 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -3.16 Total: 9.37 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -5.79 Total: -5.46 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.48 Total: -43.46 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.09 Total: -20.04 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.53 -8.54 -41.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012505310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.014 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds