Wall clock time and date at job start Tue Mar 31 2020 04:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86800 * 120.00623 * 2 1 4 4 H 1.48493 * 109.47465 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47121 * 300.00531 * 3 2 1 6 6 H 1.48503 * 109.46515 * 60.00316 * 3 2 1 7 7 C 1.40144 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.41655 * 119.99958 * 359.97438 * 7 2 1 10 10 O 1.21781 * 119.99958 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99879 * 180.02562 * 9 7 2 12 12 C 1.39034 * 119.99760 * 175.73284 * 11 9 7 13 13 C 1.39325 * 119.94536 * 34.91691 * 12 11 9 14 14 C 1.37609 * 120.06044 * 179.72577 * 13 12 11 15 15 C 1.39829 * 119.93830 * 0.54701 * 14 13 12 16 16 C 1.47569 * 120.05729 * 179.74572 * 15 14 13 17 17 N 1.31041 * 124.99264 * 359.97438 * 16 15 14 18 18 C 1.35639 * 108.76948 * 179.97438 * 17 16 15 19 19 C 1.39790 * 133.69511 * 179.97438 * 18 17 16 20 20 C 1.36653 * 119.83781 * 180.02562 * 19 18 17 21 21 C 1.38739 * 120.57759 * 0.02562 * 20 19 18 22 22 C 1.38013 * 120.50011 * 0.02562 * 21 20 19 23 23 C 1.38614 * 119.77074 * 359.97438 * 22 21 20 24 24 O 1.34689 * 124.98705 * 179.67848 * 16 15 14 25 25 C 1.39828 * 119.88273 * 359.72883 * 15 14 13 26 26 C 1.37616 * 119.93809 * 359.97438 * 25 15 14 27 27 H 0.97005 * 119.99475 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99992 * 355.44683 * 11 9 7 29 29 H 1.08001 * 119.96348 * 359.97438 * 13 12 11 30 30 H 1.07997 * 120.02703 * 180.27694 * 14 13 12 31 31 H 1.08001 * 120.07903 * 359.97438 * 19 18 17 32 32 H 1.08000 * 119.71064 * 179.97438 * 20 19 18 33 33 H 1.07994 * 119.75412 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.11593 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.03147 * 179.97438 * 25 15 14 36 36 H 1.07995 * 119.96769 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7004 1.3462 -0.0006 5 1 1.8817 2.3964 -1.2124 6 1 1.8817 2.3962 1.2126 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2138 -0.0010 9 6 1.2986 -2.4404 -0.0005 10 8 0.0807 -2.4403 0.0004 11 7 1.9724 -3.6077 -0.0005 12 6 1.2800 -4.8100 0.0891 13 6 0.0330 -4.9414 -0.5184 14 6 -0.6518 -6.1321 -0.4360 15 6 -0.1003 -7.2071 0.2679 16 6 -0.8349 -8.4834 0.3626 17 7 -2.0078 -8.7170 -0.1732 18 6 -2.3740 -9.9905 0.1162 19 6 -3.4976 -10.7649 -0.1872 20 6 -3.5766 -12.0533 0.2612 21 6 -2.5504 -12.6018 1.0169 22 6 -1.4330 -11.8540 1.3283 23 6 -1.3345 -10.5452 0.8825 24 8 -0.3959 -9.5812 1.0078 25 6 1.1488 -7.0707 0.8815 26 6 1.8321 -5.8796 0.7907 27 1 -0.4849 0.8401 0.0004 28 1 2.9400 -3.6090 -0.0672 29 1 -0.3946 -4.1092 -1.0578 30 1 -1.6163 -6.2348 -0.9109 31 1 -4.3016 -10.3456 -0.7738 32 1 -4.4458 -12.6496 0.0260 33 1 -2.6265 -13.6216 1.3640 34 1 -0.6377 -12.2874 1.9166 35 1 1.5768 -7.8993 1.4261 36 1 2.7970 -5.7739 1.2641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012505310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:59 Heat of formation + Delta-G solvation = 7.208413 kcal Electronic energy + Delta-G solvation = -22877.587159 eV Core-core repulsion = 19292.111501 eV Total energy + Delta-G solvation = -3585.475658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.095 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.23708 -40.97220 -39.20019 -38.73101 -35.99127 -35.39189 -34.54745 -32.10669 -31.96135 -31.62205 -29.84322 -28.41603 -25.23211 -24.47602 -23.46796 -23.14099 -22.52856 -21.63106 -19.55655 -18.97489 -18.62172 -17.99368 -17.84156 -17.60900 -17.41504 -16.13008 -15.84341 -15.74199 -15.20682 -15.05294 -14.85608 -14.73122 -14.54228 -14.20731 -13.86714 -13.51870 -13.43161 -13.14825 -13.07337 -12.86034 -12.72011 -12.59735 -12.54022 -12.16812 -11.98565 -11.49272 -11.20832 -10.92227 -10.10641 -9.89380 -9.79278 -9.61301 -8.66606 -8.40969 -7.04650 -0.71664 0.22022 0.31876 0.43955 1.34167 1.37563 1.40571 1.52063 1.58724 2.19759 2.34141 2.65311 2.68781 2.80763 2.91652 3.47813 3.59694 3.86796 3.88575 3.97914 4.12401 4.20337 4.28552 4.36411 4.40048 4.57384 4.66213 4.79257 5.00539 5.06762 5.09942 5.20738 5.31509 5.32710 5.37041 5.40423 5.45466 5.68755 5.74111 5.86335 6.12976 6.29965 6.53353 6.71759 7.33534 8.34274 8.53228 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.044912 B = 0.002411 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.289839 B =11611.360294 C =12108.073621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.030 3.970 3 Si 1.002 2.998 4 H -0.243 1.243 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.526 3.474 10 O -0.611 6.611 11 N -0.689 5.689 12 C 0.199 3.801 13 C -0.159 4.159 14 C -0.042 4.042 15 C -0.094 4.094 16 C 0.303 3.697 17 N -0.512 5.512 18 C -0.009 4.009 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.083 4.083 22 C -0.097 4.097 23 C -0.024 4.024 24 O -0.215 6.215 25 C -0.044 4.044 26 C -0.163 4.163 27 H 0.279 0.721 28 H 0.412 0.588 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.174 0.826 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -22.433 2.518 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.166 1.166 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.113 0.887 9 C 0.336 3.664 10 O -0.498 6.498 11 N -0.333 5.333 12 C 0.098 3.902 13 C -0.180 4.180 14 C -0.062 4.062 15 C -0.097 4.097 16 C 0.096 3.904 17 N -0.242 5.242 18 C -0.121 4.121 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.074 4.074 24 O -0.107 6.107 25 C -0.064 4.064 26 C -0.184 4.184 27 H 0.090 0.910 28 H 0.248 0.752 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.192 0.808 33 H 0.201 0.799 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.552 -21.831 2.175 21.946 hybrid contribution 0.768 0.850 0.112 1.151 sum 0.216 -20.981 2.288 21.107 Atomic orbital electron populations 1.70169 1.09741 1.29542 1.33306 1.27055 0.95495 1.05281 0.90999 0.84898 0.79507 0.74919 0.78588 1.16605 1.19328 1.19340 1.20602 0.95731 0.90346 1.52753 0.88691 1.17457 0.87357 0.83752 0.77846 1.90629 1.15516 1.86904 1.56721 1.43749 1.10528 1.03744 1.75241 1.18482 0.92734 0.86938 0.92007 1.21205 0.96829 0.97218 1.02768 1.20907 0.99001 0.90512 0.95767 1.17293 0.96514 0.87605 1.08244 1.23955 0.89290 0.87463 0.89689 1.70827 1.12063 1.16218 1.25050 1.20472 0.98863 0.90781 1.02015 1.20460 0.95000 0.94227 1.00575 1.21293 1.00687 0.93619 0.96888 1.21617 0.90997 1.01277 0.96199 1.20410 1.01577 0.87402 1.02165 1.21004 0.89272 0.93137 1.03975 1.84487 1.42823 1.20485 1.62872 1.21171 0.91508 0.97864 0.95809 1.21096 1.03367 0.92272 1.01691 0.91034 0.75157 0.86798 0.85311 0.84203 0.80821 0.79885 0.82342 0.82248 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.81 11.73 21.85 0.26 -46.55 16 2 C 0.03 1.59 5.50 85.33 0.47 2.06 16 3 Si 1.00 38.55 29.56 68.60 2.03 40.57 16 4 H -0.24 -8.55 7.11 99.48 0.71 -7.84 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.56 -29.82 9.31 23.58 0.22 -29.60 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.53 29.16 7.40 85.09 0.63 29.79 16 10 O -0.61 -39.15 12.27 -4.61 -0.06 -39.20 16 11 N -0.69 -30.01 5.29 -311.45 -1.65 -31.66 16 12 C 0.20 8.12 6.30 38.52 0.24 8.36 16 13 C -0.16 -7.09 8.66 22.38 0.19 -6.90 16 14 C -0.04 -1.64 9.66 22.51 0.22 -1.42 16 15 C -0.09 -3.27 5.88 -20.05 -0.12 -3.39 16 16 C 0.30 10.51 7.83 87.27 0.68 11.19 16 17 N -0.51 -18.51 10.88 -297.44 -3.24 -21.75 16 18 C -0.01 -0.27 7.23 39.49 0.29 0.02 16 19 C -0.08 -1.83 10.06 22.27 0.22 -1.61 16 20 C -0.11 -1.42 9.97 22.02 0.22 -1.20 16 21 C -0.08 -0.97 10.03 22.34 0.22 -0.75 16 22 C -0.10 -1.71 10.07 22.31 0.22 -1.49 16 23 C -0.02 -0.66 7.43 22.92 0.17 -0.49 16 24 O -0.21 -6.67 10.45 -14.69 -0.15 -6.82 16 25 C -0.04 -1.29 9.69 22.51 0.22 -1.07 16 26 C -0.16 -5.10 9.95 22.39 0.22 -4.88 16 27 H 0.28 14.73 8.29 -92.70 -0.77 13.96 16 28 H 0.41 14.59 8.77 -92.71 -0.81 13.77 16 29 H 0.11 5.98 6.20 -2.91 -0.02 5.96 16 30 H 0.13 5.00 7.79 -2.91 -0.02 4.98 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 34 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.16 3.64 7.86 -2.91 -0.02 3.62 16 36 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -78.47 323.50 1.85 -76.62 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.33 Total: 30.16 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 4.33 Total: -1.37 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.63 Total: -99.96 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.21 Total: -46.02 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -78.47 1.85 -76.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012505310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.827 kcal (2) G-P(sol) polarization free energy of solvation -78.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds