Wall clock time and date at job start Tue Mar 31 2020 04:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99566 * 2 1 4 4 H 1.48499 * 109.46902 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47512 * 300.00271 * 3 2 1 6 6 H 1.48505 * 109.47168 * 60.00268 * 3 2 1 7 7 C 1.37875 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99681 * 173.70039 * 7 2 1 9 9 C 1.50697 * 120.00436 * 353.70441 * 7 2 1 10 10 C 1.53005 * 115.54893 * 86.11080 * 9 7 2 11 11 O 1.42906 * 109.47062 * 65.11053 * 10 9 7 12 12 C 1.34999 * 116.99765 * 179.97438 * 11 10 9 13 13 O 1.21729 * 120.00236 * 0.02562 * 12 11 10 14 14 C 1.41014 * 119.99534 * 179.97438 * 12 11 10 15 15 C 1.35246 * 119.99951 * 180.02562 * 14 12 11 16 16 S 1.76204 * 119.99837 * 0.02562 * 15 14 12 17 17 C 1.80998 * 100.00038 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47401 * 179.97438 * 17 16 15 19 19 C 1.34510 * 125.78974 * 89.99478 * 18 17 16 20 20 C 1.41381 * 106.84360 * 180.02562 * 19 18 17 21 21 C 1.34515 * 106.84008 * 0.02562 * 20 19 18 22 22 O 1.34298 * 125.78922 * 269.69657 * 18 17 16 23 23 C 1.52998 * 117.50027 * 231.78391 * 9 7 2 24 24 C 1.52993 * 117.49935 * 300.44091 * 9 7 2 25 25 H 0.96994 * 120.00364 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47178 * 305.11148 * 10 9 7 27 27 H 1.08998 * 109.46848 * 185.11363 * 10 9 7 28 28 H 1.07997 * 120.00157 * 0.27934 * 14 12 11 29 29 H 1.08007 * 120.00474 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.47449 * 299.99658 * 17 16 15 31 31 H 1.08999 * 109.47383 * 60.00196 * 17 16 15 32 32 H 1.08004 * 126.57924 * 0.04499 * 19 18 17 33 33 H 1.07999 * 126.58383 * 179.97438 * 20 19 18 34 34 H 1.07992 * 125.79538 * 179.97438 * 21 20 19 35 35 H 1.09003 * 117.49786 * 215.00388 * 23 9 7 36 36 H 1.09006 * 117.49711 * 0.02562 * 23 9 7 37 37 H 1.09005 * 117.50137 * 359.97438 * 24 9 7 38 38 H 1.09001 * 117.49841 * 144.96872 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1032 9 6 1.2579 -2.4953 0.1420 10 6 0.7194 -3.0930 -1.1594 11 8 1.8127 -3.4583 -2.0041 12 6 1.5071 -4.0051 -3.2000 13 8 0.3426 -4.1665 -3.5158 14 6 2.5370 -4.3885 -4.0837 15 6 2.2309 -4.9359 -5.2819 16 16 0.5453 -5.1694 -5.7391 17 6 0.7633 -5.9084 -7.3769 18 6 -0.5865 -6.2030 -7.9788 19 6 -1.3071 -5.3632 -8.7434 20 6 -2.4984 -6.0424 -9.0876 21 6 -2.4347 -7.2566 -8.5122 22 8 -1.2715 -7.3507 -7.8475 23 6 1.7341 -3.4683 1.2224 24 6 0.4254 -2.6969 1.4096 25 1 -0.4850 0.8400 0.0004 26 1 0.0979 -2.3560 -1.6679 27 1 0.1234 -3.9773 -0.9337 28 1 3.5701 -4.2487 -3.8020 29 1 3.0196 -5.2299 -5.9587 30 1 1.3044 -5.2141 -8.0197 31 1 1.3297 -6.8351 -7.2849 32 1 -1.0289 -4.3621 -9.0382 33 1 -3.3051 -5.6596 -9.6951 34 1 -3.1887 -8.0270 -8.5778 35 1 1.6637 -4.5343 1.0061 36 1 2.5872 -3.1670 1.8305 37 1 0.4180 -1.8885 2.1408 38 1 -0.5063 -3.2550 1.3164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255672229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:38 Heat of formation + Delta-G solvation = -19.735157 kcal Electronic energy + Delta-G solvation = -21645.297792 eV Core-core repulsion = 18161.804973 eV Total energy + Delta-G solvation = -3483.492819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.76835 -39.92441 -36.94414 -35.33714 -33.42062 -33.02104 -32.16086 -31.92965 -27.34130 -26.89788 -25.38655 -23.82476 -21.98741 -21.16477 -20.91943 -19.74023 -19.23384 -17.86359 -17.57185 -16.72941 -16.53455 -15.87133 -15.56986 -15.02945 -14.92294 -14.60570 -14.35601 -14.10905 -13.78142 -13.14302 -13.05147 -12.98149 -12.65444 -12.31009 -12.22915 -11.85048 -11.58423 -11.03463 -10.98544 -10.82441 -10.57964 -10.47836 -10.24416 -10.14754 -9.78663 -9.66033 -9.38750 -8.78256 -8.55023 -8.44143 -8.17666 -7.65044 -6.04390 -4.09572 0.94868 1.00123 1.85501 2.24236 2.54434 2.73026 3.29141 3.37408 3.37578 3.41832 3.62326 4.30879 4.41271 4.61902 4.79254 4.89070 4.94349 5.07527 5.25115 5.34415 5.55313 5.57091 5.68411 5.79682 5.83823 5.97709 6.05067 6.24759 6.29948 6.38007 6.58129 6.69964 6.76478 6.87936 7.06568 7.29034 7.40119 7.50630 7.88926 8.37573 8.47518 8.92368 9.56157 11.04980 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.020709 B = 0.002727 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.763082 B =10264.282682 C =10484.835975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.489 4.489 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.113 3.887 11 O -0.325 6.325 12 C 0.476 3.524 13 O -0.500 6.500 14 C -0.179 4.179 15 C -0.108 4.108 16 S 0.052 5.948 17 C -0.110 4.110 18 C 0.004 3.996 19 C -0.192 4.192 20 C -0.214 4.214 21 C -0.036 4.036 22 O -0.172 6.172 23 C -0.206 4.206 24 C -0.145 4.145 25 H 0.260 0.740 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -13.120 -16.746 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.040 3.960 11 O -0.240 6.240 12 C 0.324 3.676 13 O -0.395 6.395 14 C -0.213 4.213 15 C -0.242 4.242 16 S 0.299 5.701 17 C -0.256 4.256 18 C -0.047 4.047 19 C -0.214 4.214 20 C -0.233 4.233 21 C -0.105 4.105 22 O -0.069 6.069 23 C -0.243 4.243 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.221 0.779 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.064 -13.075 -16.148 20.805 hybrid contribution 1.349 0.832 -0.807 1.779 sum 0.285 -12.242 -16.955 20.915 Atomic orbital electron populations 1.70015 1.05889 1.26546 1.49270 1.25021 0.94856 0.99077 0.94549 0.86537 0.80303 0.83636 0.77584 1.19595 1.21022 1.20943 1.20430 0.93123 0.88347 1.50762 0.91831 1.18779 0.98892 0.94177 0.84407 1.22491 0.85967 0.96853 0.90733 1.86250 1.40657 1.70730 1.26336 1.19928 0.88573 0.76407 0.82703 1.90662 1.21871 1.52625 1.74379 1.20887 1.00428 1.06262 0.93768 1.26148 1.01013 0.98068 0.99015 1.88271 1.01642 1.70225 1.09913 1.22641 0.93254 1.05893 1.03786 1.21301 0.95376 0.85585 1.02425 1.21627 0.95545 1.01333 1.02895 1.21854 1.00227 0.95300 1.05899 1.24074 0.88108 1.00204 0.98100 1.84014 1.27666 1.35934 1.59255 1.23009 0.98539 0.95732 1.07020 1.22526 0.92280 1.01190 1.02255 0.92990 0.90856 0.94592 0.83002 0.83155 0.86973 0.88096 0.83145 0.83234 0.77919 0.91569 0.90100 0.89460 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 12.88 55.43 0.71 -24.39 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.49 -13.48 8.77 -34.44 -0.30 -13.78 16 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.04 0.96 1.62 -155.66 -0.25 0.71 16 10 C 0.11 2.75 5.20 37.16 0.19 2.95 16 11 O -0.32 -7.28 10.03 -41.31 -0.41 -7.69 16 12 C 0.48 9.29 7.66 31.78 0.24 9.54 16 13 O -0.50 -10.63 13.11 -19.44 -0.25 -10.89 16 14 C -0.18 -2.57 9.97 -39.60 -0.39 -2.97 16 15 C -0.11 -1.25 10.09 29.67 0.30 -0.96 16 16 S 0.05 0.71 18.59 -107.50 -2.00 -1.29 16 17 C -0.11 -1.05 6.20 36.01 0.22 -0.83 16 18 C 0.00 0.05 6.58 -35.62 -0.23 -0.19 16 19 C -0.19 -2.04 10.81 -39.70 -0.43 -2.46 16 20 C -0.21 -2.01 10.91 -39.70 -0.43 -2.45 16 21 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 22 O -0.17 -2.01 10.65 5.70 0.06 -1.94 16 23 C -0.21 -4.55 9.96 -26.70 -0.27 -4.82 16 24 C -0.15 -3.42 9.37 -26.70 -0.25 -3.67 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.97 8.13 -51.93 -0.42 1.54 16 27 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 28 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 29 H 0.15 1.09 8.03 -52.48 -0.42 0.67 16 30 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 38 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -32.36 352.17 -7.99 -40.34 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.04 Total: 1.50 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.34 Total: -17.13 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.71 Total: -24.39 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.61 Total: -20.52 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.00 Total: -1.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.36 -7.99 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255672229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.607 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds