Wall clock time and date at job start Tue Mar 31 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46747 * 2 1 4 4 C 1.50699 * 109.46992 * 119.99731 * 2 1 3 5 5 H 1.07999 * 119.99919 * 120.00136 * 4 2 1 6 6 C 1.37884 * 120.00333 * 300.00275 * 4 2 1 7 7 N 1.31517 * 119.99567 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00275 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47044 * 59.99836 * 8 6 4 10 10 H 1.48495 * 109.47204 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47091 * 300.00396 * 8 6 4 12 12 N 1.46498 * 109.47490 * 239.99961 * 2 1 3 13 13 C 1.46496 * 119.99925 * 295.56242 * 12 2 1 14 14 S 1.65604 * 119.99734 * 115.55971 * 12 2 1 15 15 O 1.42099 * 106.39786 * 154.82688 * 14 12 2 16 16 O 1.42089 * 106.40413 * 21.90227 * 14 12 2 17 17 N 1.65601 * 107.21630 * 268.35941 * 14 12 2 18 18 C 1.46497 * 120.00137 * 293.99277 * 17 14 12 19 19 H 1.08996 * 110.43686 * 4.68641 * 18 17 14 20 20 C 1.55892 * 110.82229 * 241.48859 * 18 17 14 21 21 S 1.83088 * 82.43826 * 217.31001 * 20 18 17 22 22 C 1.55883 * 110.78313 * 127.86454 * 18 17 14 23 23 C 1.53002 * 114.38150 * 29.32413 * 22 18 17 24 24 C 1.53002 * 114.38110 * 256.11348 * 22 18 17 25 25 H 1.08999 * 109.46981 * 64.42026 * 1 2 3 26 26 H 1.09000 * 109.46699 * 184.41868 * 1 2 3 27 27 H 1.08999 * 109.47310 * 304.41866 * 1 2 3 28 28 H 0.96998 * 119.99901 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.46853 * 269.99797 * 13 12 2 30 30 H 1.09002 * 109.47048 * 29.99613 * 13 12 2 31 31 H 1.09004 * 109.46925 * 149.99834 * 13 12 2 32 32 H 0.97003 * 120.00068 * 113.99141 * 17 14 12 33 33 H 1.09001 * 114.38000 * 103.91492 * 20 18 17 34 34 H 1.09000 * 114.41356 * 330.69985 * 20 18 17 35 35 H 1.09005 * 109.47123 * 172.19095 * 23 22 18 36 36 H 1.08998 * 109.47129 * 292.18643 * 23 22 18 37 37 H 1.08994 * 109.46944 * 52.18907 * 23 22 18 38 38 H 1.09005 * 109.46684 * 307.81351 * 24 22 18 39 39 H 1.08995 * 109.47261 * 67.80642 * 24 22 18 40 40 H 1.08998 * 109.47096 * 187.81563 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1208 4.0083 10 1 1.8257 -0.4205 5.2205 11 1 1.8257 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 6 1.7465 -2.1183 -1.3800 14 16 2.8778 0.1428 -2.3404 15 8 3.6845 -0.8148 -3.0124 16 8 3.4106 1.2869 -1.6877 17 7 1.7913 0.7046 -3.4566 18 6 1.0526 -0.2390 -4.2993 19 1 1.2750 -1.2652 -4.0068 20 6 1.3792 -0.0093 -5.8062 21 16 -0.3976 -0.4050 -6.0024 22 6 -0.4798 0.0380 -4.2278 23 6 -0.8456 1.4989 -3.9579 24 6 -1.2614 -0.9544 -3.3646 25 1 -0.3633 0.4437 -0.9269 26 1 -0.3633 -1.0246 0.0792 27 1 -0.3634 0.5809 0.8477 28 1 0.7085 1.1613 3.4844 29 1 2.5532 -2.7019 -0.9362 30 1 0.8041 -2.3740 -0.8956 31 1 1.6800 -2.3413 -2.4449 32 1 1.6439 1.6586 -3.5525 33 1 2.0550 -0.7476 -6.2378 34 1 1.6418 1.0180 -6.0588 35 1 -1.9229 1.6288 -4.0613 36 1 -0.5428 1.7683 -2.9461 37 1 -0.3319 2.1403 -4.6739 38 1 -1.0287 -1.9717 -3.6795 39 1 -0.9822 -0.8250 -2.3190 40 1 -2.3300 -0.7736 -3.4805 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332060421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:56 Heat of formation + Delta-G solvation = -58.419666 kcal Electronic energy + Delta-G solvation = -23430.730334 eV Core-core repulsion = 20113.296731 eV Total energy + Delta-G solvation = -3317.433603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.11720 -36.71808 -36.20192 -35.31349 -32.75845 -32.62216 -30.07915 -29.18462 -27.67660 -25.58949 -25.22871 -23.55093 -20.92534 -20.39341 -19.07034 -17.43293 -16.90447 -16.56669 -16.21388 -15.79450 -15.14404 -14.83616 -14.51580 -14.27462 -13.72129 -13.52820 -13.27798 -13.03554 -12.83975 -12.48206 -12.25577 -12.14262 -11.91755 -11.80303 -11.73622 -11.58177 -11.45631 -11.43442 -11.26823 -11.15018 -11.00228 -10.86345 -10.54995 -10.28911 -10.08382 -9.58873 -9.50238 -9.24089 -8.49929 -8.04526 -7.92360 -6.11532 -4.17688 1.09064 1.49955 1.91609 3.27687 3.32512 3.34263 3.38881 3.96386 4.08720 4.27991 4.37295 4.53037 4.82830 4.88028 4.95785 5.20046 5.20885 5.37277 5.53395 5.55621 5.63628 5.69731 5.73966 5.86336 6.01840 6.06818 6.14146 6.31383 6.57587 6.70305 6.74757 6.93557 6.98986 7.40953 7.58840 7.74689 7.98736 8.22900 8.84306 9.48290 10.94468 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.005142 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.740413 B = 5443.535246 C = 5936.332547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.061 0.939 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.988 5.988 13 C 0.109 3.891 14 S 2.773 3.227 15 O -0.994 6.994 16 O -0.973 6.973 17 N -1.122 6.122 18 C 0.140 3.860 19 H 0.118 0.882 20 C -0.072 4.072 21 S -0.324 6.324 22 C -0.006 4.006 23 C -0.128 4.128 24 C -0.138 4.138 25 H 0.013 0.987 26 H 0.034 0.966 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -1.147 -13.419 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.831 5.831 13 C -0.037 4.037 14 S 2.782 3.218 15 O -0.977 6.977 16 O -0.957 6.957 17 N -0.879 5.879 18 C 0.029 3.971 19 H 0.135 0.865 20 C -0.223 4.223 21 S -0.098 6.098 22 C -0.117 4.117 23 C -0.187 4.187 24 C -0.196 4.196 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.248 0.752 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.424 -1.522 -14.272 15.020 hybrid contribution 0.496 0.225 1.574 1.665 sum -3.927 -1.297 -12.699 13.355 Atomic orbital electron populations 1.22178 0.98313 1.00339 0.99829 1.18753 0.91167 0.93139 0.80442 0.92164 1.21265 1.31801 1.13062 0.89964 0.91960 1.24895 0.94930 0.94979 0.98978 1.69852 1.36417 1.22643 1.23923 0.86558 0.79339 0.79578 0.81925 1.20193 1.21244 1.20253 1.57679 1.73432 1.17490 1.34490 1.21194 1.02361 0.81502 0.98657 1.02190 0.73725 0.73396 0.72534 1.93554 1.65925 1.62902 1.75311 1.93615 1.76910 1.51039 1.74137 1.56553 1.61144 1.16287 1.53877 1.23700 0.89131 0.95272 0.88978 0.86455 1.25261 0.94008 1.05963 0.97042 1.88565 1.13500 1.88052 1.19635 1.24389 0.96429 0.99937 0.90939 1.21727 1.02327 0.91526 1.03096 1.21854 0.99664 0.97504 1.00569 0.96795 0.94674 0.89147 0.92641 0.93096 0.90766 0.93733 0.75214 0.86566 0.87160 0.91220 0.90040 0.91721 0.91185 0.89112 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.38 37.16 0.31 -2.71 16 2 C 0.27 6.11 2.65 -69.08 -0.18 5.93 16 3 H 0.06 1.55 6.81 -51.93 -0.35 1.20 16 4 C -0.52 -13.41 8.32 -34.44 -0.29 -13.70 16 5 H 0.06 1.60 7.39 -52.49 -0.39 1.21 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.93 11.37 55.43 0.63 -23.30 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.99 -18.82 3.12 -115.85 -0.36 -19.18 16 13 C 0.11 1.79 9.34 59.84 0.56 2.35 16 14 S 2.77 50.37 5.99 -107.50 -0.64 49.73 16 15 O -0.99 -19.43 16.89 -57.17 -0.97 -20.39 16 16 O -0.97 -21.44 16.62 -57.17 -0.95 -22.39 16 17 N -1.12 -14.83 5.18 -33.16 -0.17 -15.00 16 18 C 0.14 1.66 3.04 -64.85 -0.20 1.46 16 19 H 0.12 1.43 5.92 -51.93 -0.31 1.12 16 20 C -0.07 -0.76 8.78 38.70 0.34 -0.42 16 21 S -0.32 -3.77 23.36 -107.50 -2.51 -6.28 16 22 C -0.01 -0.06 1.66 -89.08 -0.15 -0.21 16 23 C -0.13 -1.30 8.10 37.16 0.30 -1.00 16 24 C -0.14 -1.49 9.27 37.16 0.34 -1.15 16 25 H 0.01 0.23 6.81 -51.93 -0.35 -0.12 16 26 H 0.03 0.69 7.00 -51.93 -0.36 0.32 16 27 H 0.09 2.12 6.20 -51.93 -0.32 1.80 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 30 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 31 H 0.04 0.60 6.10 -51.93 -0.32 0.28 16 32 H 0.41 4.73 7.84 -34.47 -0.27 4.46 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 37 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 39 H 0.09 1.09 6.21 -51.93 -0.32 0.77 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -30.67 338.28 -9.79 -40.47 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.84 Total: 3.53 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.95 Total: -7.84 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.10 Total: -57.48 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.92 Total: -42.78 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 46.60 SS G_CDS: -3.16 Total: 43.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.67 -9.79 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332060421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.953 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds