Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46512 * 109.46734 * 2 1 4 4 C 1.46500 * 119.99976 * 84.99881 * 3 2 1 5 5 C 1.50706 * 109.46953 * 84.99489 * 4 3 2 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99398 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 S 1.65597 * 119.99992 * 264.99569 * 3 2 1 14 14 O 1.42106 * 106.40083 * 23.54132 * 13 3 2 15 15 O 1.42091 * 106.40126 * 156.46108 * 13 3 2 16 16 N 1.65601 * 107.21840 * 270.00132 * 13 3 2 17 17 C 1.46500 * 119.99913 * 65.00335 * 16 13 3 18 18 H 1.09003 * 109.39262 * 24.99734 * 17 16 13 19 19 C 1.52580 * 109.39307 * 144.79998 * 17 16 13 20 20 C 1.52624 * 110.70545 * 190.91880 * 19 17 16 21 21 C 1.53093 * 109.87398 * 289.17953 * 20 19 17 22 22 S 1.81748 * 108.83934 * 63.06384 * 21 20 19 23 23 C 1.53103 * 109.38752 * 265.19339 * 17 16 13 24 24 H 1.08997 * 109.47588 * 300.00124 * 1 2 3 25 25 H 1.09005 * 109.47049 * 60.00667 * 1 2 3 26 26 H 1.09007 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47787 * 240.00382 * 2 1 3 28 28 H 1.09003 * 109.47220 * 119.99840 * 2 1 3 29 29 H 1.09000 * 109.47175 * 324.99918 * 4 3 2 30 30 H 1.08993 * 109.47452 * 204.99709 * 4 3 2 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00286 * 244.99915 * 16 13 3 33 33 H 1.08999 * 109.22533 * 311.14446 * 19 17 16 34 34 H 1.09008 * 109.22611 * 70.49782 * 19 17 16 35 35 H 1.09001 * 109.40304 * 169.07388 * 20 19 17 36 36 H 1.09003 * 109.38086 * 49.27510 * 20 19 17 37 37 H 1.09002 * 109.57853 * 303.25400 * 21 20 19 38 38 H 1.08997 * 109.68242 * 182.92809 * 21 20 19 39 39 H 1.09000 * 109.57803 * 296.63696 * 23 17 16 40 40 H 1.09006 * 109.57303 * 56.89438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3814 0.0000 4 6 2.1580 2.1088 1.2639 5 6 3.4946 1.7889 1.8824 6 1 4.1722 1.1118 1.3837 7 6 3.8526 2.3616 3.0845 8 7 5.0191 2.0828 3.6240 9 14 2.6809 3.5333 3.9468 10 1 2.9444 4.9216 3.4907 11 1 1.2805 3.1623 3.6200 12 1 2.8860 3.4471 5.4150 13 16 2.4121 2.1203 -1.4286 14 8 1.6868 1.4415 -2.4448 15 8 2.3055 3.5186 -1.1998 16 7 4.0144 1.8139 -1.7136 17 6 4.4657 0.4415 -1.9567 18 1 3.6364 -0.1484 -2.3471 19 6 5.6015 0.4547 -2.9755 20 6 5.9140 -0.9606 -3.4536 21 6 6.5848 -1.7537 -2.3290 22 16 5.4202 -1.9044 -0.9418 23 6 4.9528 -0.1738 -0.6421 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3615 1.8098 1.9453 30 1 2.0920 3.1804 1.0757 31 1 5.2712 2.4859 4.4695 32 1 4.6540 2.5430 -1.7196 33 1 5.3099 1.0649 -3.8303 34 1 6.4914 0.8846 -2.5154 35 1 6.5838 -0.9131 -4.3122 36 1 4.9881 -1.4570 -3.7441 37 1 7.4817 -1.2304 -1.9976 38 1 6.8534 -2.7466 -2.6896 39 1 5.8178 0.3804 -0.2779 40 1 4.1541 -0.1322 0.0985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337091942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -87.720227 kcal Electronic energy + Delta-G solvation = -23275.079061 eV Core-core repulsion = 19956.374890 eV Total energy + Delta-G solvation = -3318.704170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.81821 -36.70657 -36.22600 -35.35009 -33.62807 -32.66845 -30.25767 -29.39274 -27.21085 -27.17167 -23.02046 -22.66066 -21.58564 -20.94385 -18.94724 -17.32364 -17.25439 -16.74294 -16.62403 -15.84799 -15.25598 -14.77026 -14.39817 -14.21989 -14.03090 -13.55965 -13.44460 -13.16974 -13.09347 -12.76487 -12.49373 -12.09167 -11.96161 -11.82770 -11.67533 -11.52848 -11.45897 -11.41847 -11.16166 -11.10743 -11.01531 -10.60485 -10.50031 -10.41990 -10.17938 -9.93665 -9.54209 -9.18951 -8.67165 -8.15967 -7.52912 -6.18185 -4.19289 1.15836 1.90134 2.63494 3.24812 3.31297 3.34975 3.43354 4.03351 4.33144 4.57415 4.64263 4.77385 4.88750 4.99113 5.15771 5.17887 5.31204 5.36672 5.42451 5.62647 5.66061 5.67105 5.72963 5.78115 5.88569 5.97834 6.02050 6.20005 6.22466 6.40127 6.49346 6.57527 6.83357 7.06384 7.21094 7.42168 7.52805 8.37344 8.84397 9.42507 10.93316 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.006607 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.537483 B = 4236.664075 C = 5079.535255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.987 5.987 4 C 0.214 3.786 5 C -0.548 4.548 6 H 0.089 0.911 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.868 3.132 10 H -0.273 1.273 11 H -0.264 1.264 12 H -0.285 1.285 13 S 2.787 3.213 14 O -0.994 6.994 15 O -0.981 6.981 16 N -1.117 6.117 17 C 0.158 3.842 18 H 0.097 0.903 19 C -0.134 4.134 20 C -0.118 4.118 21 C -0.089 4.089 22 S -0.260 6.260 23 C -0.104 4.104 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.415 0.585 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -6.179 -11.841 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.828 5.828 4 C 0.091 3.909 5 C -0.587 4.587 6 H 0.107 0.893 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.695 3.305 10 H -0.199 1.199 11 H -0.188 1.188 12 H -0.211 1.211 13 S 2.795 3.205 14 O -0.977 6.977 15 O -0.966 6.966 16 N -0.875 5.875 17 C 0.048 3.952 18 H 0.115 0.885 19 C -0.173 4.173 20 C -0.157 4.157 21 C -0.237 4.237 22 S -0.034 6.034 23 C -0.253 4.253 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.465 -6.706 -11.680 13.476 hybrid contribution 0.617 1.842 0.474 2.000 sum 0.152 -4.864 -11.206 12.217 Atomic orbital electron populations 1.22199 0.96705 1.01673 1.02298 1.21103 0.93905 0.82504 1.02654 1.57518 1.78801 1.23053 1.23401 1.19594 0.98296 0.92121 0.80915 1.21599 1.01078 1.29481 1.06544 0.89304 1.24840 0.94922 0.95955 0.96868 1.69888 1.20447 1.43679 1.18897 0.86964 0.82213 0.82206 0.79097 1.19854 1.18838 1.21116 1.01704 0.72887 0.72984 0.72973 1.93558 1.70701 1.76408 1.57075 1.93579 1.85869 1.31141 1.85977 1.56079 1.29182 1.13868 1.88329 1.20962 0.98135 0.82351 0.93734 0.88531 1.21828 0.98632 0.97558 0.99308 1.21729 1.01589 0.94979 0.97434 1.23478 0.99702 1.04251 0.96281 1.86964 1.58036 1.13759 1.44649 1.24426 1.06954 0.92776 1.01179 0.92233 0.92531 0.92054 0.91460 0.89827 0.94470 0.94000 0.92511 0.75183 0.90296 0.90954 0.90649 0.90310 0.89884 0.87973 0.88725 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.23 37.15 0.38 -2.13 16 2 C 0.12 2.05 4.98 -4.04 -0.02 2.03 16 3 N -0.99 -18.84 2.42 -115.66 -0.28 -19.12 16 4 C 0.21 4.79 4.50 -5.19 -0.02 4.77 16 5 C -0.55 -13.83 9.94 -34.44 -0.34 -14.18 16 6 H 0.09 2.27 5.35 -52.49 -0.28 1.99 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 9 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 S 2.79 52.03 6.08 -107.50 -0.65 51.37 16 14 O -0.99 -19.10 16.44 -57.17 -0.94 -20.05 16 15 O -0.98 -21.42 16.69 -57.17 -0.95 -22.38 16 16 N -1.12 -17.38 5.52 -5.03 -0.03 -17.41 16 17 C 0.16 2.20 2.66 -68.09 -0.18 2.02 16 18 H 0.10 1.37 7.03 -51.93 -0.37 1.00 16 19 C -0.13 -1.48 5.13 -27.14 -0.14 -1.62 16 20 C -0.12 -1.11 5.76 -26.88 -0.15 -1.27 16 21 C -0.09 -0.92 6.45 37.21 0.24 -0.68 16 22 S -0.26 -3.68 22.33 -107.50 -2.40 -6.08 16 23 C -0.10 -1.63 5.46 37.21 0.20 -1.43 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.01 7.24 -51.93 -0.38 0.64 16 28 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 29 H 0.04 0.82 7.17 -51.93 -0.37 0.45 16 30 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.41 5.90 8.83 -34.47 -0.30 5.60 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.78 8.08 -51.92 -0.42 0.36 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.13 2.40 4.64 -51.93 -0.24 2.16 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -30.75 336.52 -10.29 -41.04 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.08 Total: 6.86 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.13 Total: -10.49 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.47 Total: -61.17 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.89 Total: -42.42 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -3.05 Total: 45.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.75 -10.29 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.684 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds