Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46510 * 109.46953 * 2 1 4 4 C 1.46505 * 119.99626 * 274.99526 * 3 2 1 5 5 C 1.50703 * 109.47300 * 283.00435 * 4 3 2 6 6 H 1.07998 * 119.99692 * 4.36936 * 5 4 3 7 7 C 1.37875 * 119.99889 * 184.36626 * 5 4 3 8 8 N 1.31513 * 119.99744 * 358.48870 * 7 5 4 9 9 Si 1.86800 * 120.00029 * 178.48908 * 7 5 4 10 10 H 1.48495 * 109.47298 * 63.09845 * 9 7 5 11 11 H 1.48493 * 109.47158 * 183.10399 * 9 7 5 12 12 H 1.48504 * 109.46643 * 303.09885 * 9 7 5 13 13 S 1.65596 * 119.99998 * 94.99904 * 3 2 1 14 14 O 1.42095 * 106.40291 * 330.06815 * 13 3 2 15 15 O 1.42099 * 106.39816 * 197.14369 * 13 3 2 16 16 N 1.65609 * 107.21787 * 83.60911 * 13 3 2 17 17 C 1.46490 * 120.00146 * 66.47842 * 16 13 3 18 18 H 1.09002 * 109.39023 * 336.99259 * 17 16 13 19 19 C 1.52580 * 109.39235 * 217.19335 * 17 16 13 20 20 C 1.52576 * 110.73167 * 169.27279 * 19 17 16 21 21 C 1.53093 * 109.95553 * 70.67635 * 20 19 17 22 22 S 1.81756 * 108.84059 * 296.97598 * 21 20 19 23 23 C 1.53092 * 109.31175 * 96.74781 * 17 16 13 24 24 H 1.09003 * 109.47396 * 300.00360 * 1 2 3 25 25 H 1.09003 * 109.47018 * 60.00090 * 1 2 3 26 26 H 1.08997 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47150 * 239.99933 * 2 1 3 28 28 H 1.08996 * 109.47397 * 119.99801 * 2 1 3 29 29 H 1.09000 * 109.46925 * 43.00871 * 4 3 2 30 30 H 1.08999 * 109.46608 * 163.00289 * 4 3 2 31 31 H 0.97003 * 119.99964 * 179.97438 * 8 7 5 32 32 H 0.96997 * 119.99286 * 246.48072 * 16 13 3 33 33 H 1.09004 * 109.22686 * 48.95372 * 19 17 16 34 34 H 1.08999 * 109.19199 * 289.57691 * 19 17 16 35 35 H 1.09004 * 109.39410 * 310.52774 * 20 19 17 36 36 H 1.08996 * 109.31393 * 190.77382 * 20 19 17 37 37 H 1.09000 * 109.58160 * 177.16980 * 21 20 19 38 38 H 1.08999 * 109.68347 * 56.84739 * 21 20 19 39 39 H 1.08996 * 109.57708 * 63.31652 * 23 17 16 40 40 H 1.09004 * 109.57635 * 302.92560 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4011 1.6420 -1.9772 6 1 3.9859 0.8313 -1.5686 7 6 3.7915 2.2502 -3.1514 8 7 3.0631 3.2175 -3.6646 9 14 5.3548 1.7001 -4.0132 10 1 5.2132 0.2848 -4.4398 11 1 5.5904 2.5549 -5.2044 12 1 6.5038 1.8234 -3.0804 13 16 2.4121 2.1203 1.4286 14 8 1.5762 1.5435 2.4225 15 8 2.4525 3.5153 1.1609 16 7 3.9615 1.6708 1.8023 17 6 5.0754 2.1105 0.9586 18 1 4.7025 2.3501 -0.0372 19 6 6.1069 0.9907 0.8572 20 6 7.1440 1.3073 -0.2162 21 6 8.0471 2.4517 0.2511 22 16 7.0352 3.9453 0.4717 23 6 5.7161 3.3568 1.5749 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.2868 1.9191 -1.8907 30 1 2.2348 3.1770 -1.0618 31 1 3.3380 3.6456 -4.4906 32 1 4.1314 1.1163 2.5798 33 1 5.6014 0.0588 0.6041 34 1 6.6083 0.8774 1.8184 35 1 6.6360 1.5994 -1.1353 36 1 7.7505 0.4213 -0.4039 37 1 8.8164 2.6392 -0.4980 38 1 8.5167 2.1856 1.1981 39 1 6.1384 3.1070 2.5482 40 1 4.9623 4.1357 1.6907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337091943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -92.387054 kcal Electronic energy + Delta-G solvation = -23498.866916 eV Core-core repulsion = 20179.960377 eV Total energy + Delta-G solvation = -3318.906539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.61524 -36.61393 -36.03247 -35.23005 -33.47351 -32.72105 -29.93993 -29.36307 -27.07218 -26.64004 -23.19828 -22.54323 -21.72066 -20.71754 -18.87757 -17.18712 -16.85647 -16.79502 -16.33754 -15.59231 -15.10996 -14.87143 -14.29081 -14.24005 -13.84401 -13.49351 -13.30369 -13.02170 -12.94472 -12.83432 -12.08879 -12.04483 -11.84529 -11.74112 -11.49131 -11.45829 -11.30025 -11.25737 -11.10573 -10.96830 -10.74290 -10.49177 -10.44380 -10.23971 -10.02898 -9.88462 -9.71567 -9.12190 -8.50596 -8.07829 -7.40369 -6.12392 -4.19347 1.24078 1.97994 2.72637 3.23621 3.28240 3.31805 3.52674 4.14542 4.34107 4.79815 4.89285 4.95739 5.03395 5.16825 5.20725 5.37435 5.39446 5.51973 5.56537 5.66340 5.76688 5.79826 5.86493 5.92677 6.06530 6.12087 6.26905 6.31991 6.36383 6.55508 6.66982 6.70515 7.23423 7.36348 7.43021 7.65992 7.83651 8.14054 8.84420 9.46439 10.95493 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.008736 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.464855 B = 3204.222739 C = 4681.724887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.543 4.543 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.264 1.264 13 S 2.780 3.220 14 O -1.000 7.000 15 O -0.976 6.976 16 N -1.124 6.124 17 C 0.144 3.856 18 H 0.135 0.865 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.084 4.084 22 S -0.251 6.251 23 C -0.095 4.095 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.405 0.595 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -6.034 8.514 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.189 1.189 13 S 2.788 3.212 14 O -0.984 6.984 15 O -0.959 6.959 16 N -0.881 5.881 17 C 0.036 3.964 18 H 0.152 0.848 19 C -0.165 4.165 20 C -0.170 4.170 21 C -0.232 4.232 22 S -0.025 6.025 23 C -0.245 4.245 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.574 -4.142 8.269 10.799 hybrid contribution 1.070 -1.973 0.032 2.245 sum 6.644 -6.115 8.302 12.266 Atomic orbital electron populations 1.22208 0.96944 1.01323 1.02509 1.20942 0.93681 0.82852 1.01936 1.57717 1.78493 1.22996 1.24047 1.19253 0.97384 0.92580 0.78812 1.21415 1.10014 1.18762 1.07977 0.91939 1.24919 0.96827 0.94672 0.96949 1.69911 1.38093 1.23644 1.20425 0.86818 0.84106 0.78404 0.79452 1.20485 1.21277 1.18928 1.01943 0.72598 0.73868 0.72744 1.93550 1.65366 1.79809 1.59710 1.93589 1.86448 1.30756 1.85130 1.56235 1.24821 1.68225 1.38800 1.21302 0.87094 0.91700 0.96323 0.84779 1.21732 0.96510 0.99294 0.98938 1.21892 0.96920 0.97484 1.00682 1.23454 0.99636 0.95809 1.04332 1.86987 1.30234 1.19155 1.66129 1.24043 0.99001 1.02126 0.99374 0.92515 0.92043 0.92466 0.90057 0.92331 0.94835 0.92523 0.92455 0.76362 0.90166 0.92150 0.88663 0.90971 0.88053 0.90305 0.90232 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.15 0.38 -2.28 16 2 C 0.13 2.22 6.00 -4.04 -0.02 2.19 16 3 N -0.99 -19.52 2.86 -115.66 -0.33 -19.85 16 4 C 0.24 5.75 5.43 -5.19 -0.03 5.72 16 5 C -0.54 -13.24 7.28 -34.44 -0.25 -13.50 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.88 -24.54 13.29 55.43 0.74 -23.80 16 9 Si 0.88 19.60 29.37 -169.99 -4.99 14.61 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.26 -5.46 5.53 56.52 0.31 -5.15 16 13 S 2.78 53.11 5.98 -107.50 -0.64 52.47 16 14 O -1.00 -19.86 17.17 -57.17 -0.98 -20.85 16 15 O -0.98 -22.05 15.91 -57.17 -0.91 -22.96 16 16 N -1.12 -17.19 5.50 -5.04 -0.03 -17.22 16 17 C 0.14 2.33 2.51 -68.10 -0.17 2.16 16 18 H 0.13 2.68 5.69 -51.93 -0.30 2.38 16 19 C -0.13 -1.67 5.14 -27.16 -0.14 -1.81 16 20 C -0.13 -1.80 5.75 -26.90 -0.15 -1.95 16 21 C -0.08 -1.08 6.45 37.21 0.24 -0.84 16 22 S -0.25 -4.06 22.33 -107.50 -2.40 -6.46 16 23 C -0.10 -1.49 6.05 37.20 0.23 -1.27 16 24 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 25 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.36 7.98 -51.93 -0.41 0.94 16 28 H 0.06 0.86 7.78 -51.93 -0.40 0.45 16 29 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.06 1.51 6.73 -51.93 -0.35 1.16 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.40 4.92 8.86 -34.47 -0.31 4.61 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.09 1.63 6.29 -51.93 -0.33 1.31 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.12 2.00 7.80 -51.93 -0.41 1.59 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -29.86 340.73 -10.78 -40.64 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.34 Total: 8.15 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.02 Total: -9.85 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.38 Total: -60.87 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.89 Total: -43.81 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.99 Total: 14.61 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -3.04 Total: 46.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.86 -10.78 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337091943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.752 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds