Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31516 * 119.99665 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00369 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.46796 * 89.99697 * 8 6 4 10 10 H 1.48493 * 109.47216 * 210.00115 * 8 6 4 11 11 H 1.48500 * 109.47112 * 329.99986 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.46498 * 120.00239 * 299.72110 * 12 2 1 14 14 S 1.65597 * 119.99791 * 120.00335 * 12 2 1 15 15 O 1.42101 * 106.40154 * 203.53789 * 14 12 2 16 16 O 1.42106 * 106.40098 * 336.45446 * 14 12 2 17 17 N 1.65596 * 107.22389 * 89.99756 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 H 1.08998 * 109.39290 * 24.81025 * 18 17 14 20 20 C 1.52586 * 109.38850 * 144.51197 * 18 17 14 21 21 C 1.52583 * 110.72481 * 190.82735 * 20 18 17 22 22 C 1.53094 * 109.95485 * 289.32223 * 21 20 18 23 23 S 1.81746 * 108.84178 * 63.02691 * 22 21 20 24 24 C 1.53105 * 109.39244 * 265.00481 * 18 17 14 25 25 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 26 26 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 28 28 H 0.96996 * 120.00173 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 30 30 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 31 31 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 32 32 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 33 33 H 1.09004 * 109.22282 * 311.14168 * 20 18 17 34 34 H 1.08989 * 109.22567 * 70.50431 * 20 18 17 35 35 H 1.09002 * 109.38862 * 169.17284 * 21 20 18 36 36 H 1.08996 * 109.30938 * 49.41976 * 21 20 18 37 37 H 1.09006 * 109.57700 * 303.21663 * 22 21 20 38 38 H 1.09001 * 109.68690 * 182.89911 * 22 21 20 39 39 H 1.08997 * 109.57133 * 296.63539 * 24 18 17 40 40 H 1.08998 * 109.57380 * 56.89105 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0182 -0.6906 -1.1963 13 6 1.6693 -2.0949 -1.4251 14 16 2.9703 0.1142 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 1 4.6055 -2.0613 -2.5671 20 6 6.6041 -1.3421 -2.2435 21 6 7.1806 -2.7239 -2.5375 22 6 7.3211 -3.5190 -1.2367 23 16 5.6693 -3.7717 -0.5220 24 6 5.0166 -2.0769 -0.4526 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9035 -0.5280 4.4375 29 1 0.7413 -2.1506 -1.9941 30 1 2.4683 -2.5814 -1.9844 31 1 1.5385 -2.5976 -0.4667 32 1 5.0732 0.6550 -1.5284 33 1 6.6900 -0.7204 -3.1347 34 1 7.1674 -0.8835 -1.4310 35 1 8.1602 -2.6157 -3.0031 36 1 6.5140 -3.2556 -3.2164 37 1 7.9420 -2.9630 -0.5341 38 1 7.7807 -4.4852 -1.4448 39 1 5.5925 -1.4927 0.2652 40 1 3.9698 -2.0986 -0.1497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337902388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -100.214162 kcal Electronic energy + Delta-G solvation = -23315.419878 eV Core-core repulsion = 19996.173930 eV Total energy + Delta-G solvation = -3319.245948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.94697 -38.36021 -38.00547 -36.96574 -34.66993 -34.49731 -31.82140 -30.59801 -28.17443 -27.28994 -26.95731 -23.71319 -22.73550 -21.93041 -20.38629 -19.09076 -18.57468 -18.47651 -17.76842 -17.26345 -16.81761 -16.19892 -15.78498 -15.40147 -15.33704 -14.90599 -14.74368 -14.49625 -14.21918 -14.08858 -14.03827 -13.82513 -13.54158 -13.30116 -13.22490 -13.14730 -12.95173 -12.73636 -12.55353 -12.38172 -12.23228 -12.01057 -11.94026 -11.61771 -11.45794 -11.31134 -11.09342 -10.72575 -10.37304 -9.75966 -8.66235 -8.26263 -6.29495 -0.37664 0.82126 1.31312 1.40047 1.46582 1.56725 1.98379 2.32685 2.55744 3.08452 3.34484 3.57168 3.74793 3.88941 3.91602 4.04745 4.15242 4.38225 4.43391 4.49075 4.57231 4.61881 4.65961 4.77088 4.82528 4.86293 4.88896 5.04543 5.06120 5.11939 5.14651 5.22874 5.32810 5.48521 5.54144 5.79655 6.08357 6.36512 6.77393 7.35498 8.88041 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.015530 B = 0.006438 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.473118 B = 4348.118069 C = 5375.441324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.045 0.955 4 C -0.514 4.514 5 H 0.067 0.933 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.300 1.300 11 H -0.255 1.255 12 N -0.989 5.989 13 C 0.097 3.903 14 S 2.798 3.202 15 O -0.999 6.999 16 O -1.011 7.011 17 N -1.111 6.111 18 C 0.157 3.843 19 H 0.095 0.905 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.076 4.076 23 S -0.299 6.299 24 C -0.099 4.099 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.423 0.577 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -2.894 -12.031 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.135 3.865 3 H 0.063 0.937 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.170 4.170 7 N -0.574 5.574 8 Si 0.750 3.250 9 H -0.191 1.191 10 H -0.228 1.228 11 H -0.179 1.179 12 N -0.830 5.830 13 C -0.048 4.048 14 S 2.806 3.194 15 O -0.982 6.982 16 O -0.995 6.995 17 N -0.872 5.872 18 C 0.047 3.953 19 H 0.113 0.887 20 C -0.170 4.170 21 C -0.153 4.153 22 C -0.224 4.224 23 S -0.073 6.073 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.258 0.742 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.689 -3.524 -12.361 15.515 hybrid contribution 0.128 1.852 1.144 2.180 sum 8.818 -1.672 -11.216 14.365 Atomic orbital electron populations 1.22376 0.97521 1.02234 0.99717 1.18858 0.92048 0.92572 0.82974 0.93717 1.21430 1.31300 1.13313 0.89259 0.91549 1.25503 0.96906 0.98853 0.95744 1.69991 1.47108 1.41860 0.98439 0.86277 0.80079 0.81357 0.77259 1.19143 1.22798 1.17922 1.57417 1.65509 1.22237 1.37821 1.21440 1.00893 0.80290 1.02201 1.01252 0.72993 0.72055 0.73075 1.93550 1.86367 1.76259 1.42047 1.93548 1.84509 1.34237 1.87245 1.55890 1.31142 1.15642 1.84537 1.21138 0.97462 0.81813 0.94839 0.88659 1.21843 0.92256 0.99285 1.03644 1.21730 1.03533 0.93900 0.96154 1.23626 0.93412 1.05703 0.99656 1.87183 1.21604 1.13876 1.84621 1.24149 1.05827 0.94294 1.00613 0.92720 0.91357 0.94120 0.92615 0.91829 0.91140 0.90988 0.74160 0.88874 0.90296 0.87411 0.90448 0.89141 0.85897 0.90126 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.46 8.68 71.98 0.62 -5.83 16 2 C 0.24 10.56 2.21 44.24 0.10 10.66 16 3 H 0.05 2.09 5.97 -2.39 -0.01 2.07 16 4 C -0.51 -25.93 8.55 25.60 0.22 -25.71 16 5 H 0.07 3.57 5.70 -2.91 -0.02 3.55 16 6 C 0.03 1.57 5.45 84.66 0.46 2.03 16 7 N -0.93 -54.33 13.96 21.45 0.30 -54.03 16 8 Si 0.92 42.75 24.37 68.60 1.67 44.42 16 9 H -0.27 -11.74 6.87 99.48 0.68 -11.06 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.25 -11.41 6.53 99.48 0.65 -10.77 16 12 N -0.99 -36.96 2.73 -520.46 -1.42 -38.38 16 13 C 0.10 3.20 8.21 127.77 1.05 4.25 16 14 S 2.80 98.25 6.07 -56.49 -0.34 97.91 16 15 O -1.00 -36.55 16.55 -128.00 -2.12 -38.66 16 16 O -1.01 -41.49 16.70 -128.00 -2.14 -43.63 16 17 N -1.11 -31.13 5.52 -169.82 -0.94 -32.07 16 18 C 0.16 3.96 2.66 44.89 0.12 4.08 16 19 H 0.10 2.49 6.93 -2.39 -0.02 2.47 16 20 C -0.13 -2.34 5.13 30.32 0.16 -2.19 16 21 C -0.11 -1.65 5.75 30.49 0.18 -1.47 16 22 C -0.08 -1.31 6.45 72.01 0.46 -0.84 16 23 S -0.30 -8.17 22.33 -56.49 -1.26 -9.43 16 24 C -0.10 -2.98 6.06 72.02 0.44 -2.55 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 2.60 7.68 -2.38 -0.02 2.58 16 27 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.06 7.32 -2.39 -0.02 2.05 16 31 H 0.07 2.57 7.00 -2.39 -0.02 2.55 16 32 H 0.42 10.24 8.84 -96.75 -0.86 9.39 16 33 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.20 8.05 -2.39 -0.02 1.19 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.10 3.79 4.72 -2.39 -0.01 3.77 16 Total: -1.00 -65.93 326.76 -2.33 -68.26 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.12 Total: 23.17 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 3.80 Total: -17.58 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -2.06 Total: -124.47 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -4.26 Total: -82.29 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.67 Total: 44.42 kcal Atomic # 16 Polarization: 90.09 SS G_CDS: -1.60 Total: 88.48 kcal Total: -65.93 -2.33 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337902388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.955 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds